Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1838.9 928 100.0
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1504.6 957 80.4
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1473.8 977 77.8
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1463.7 971 77.0
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1460.7 967 77.7
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1460.7 971 78.0
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1459.5 965 77.5
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1457.2 961 77.3
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1456.4 962 78.7
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1456.4 974 77.0
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1456.0 918 80.5
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1449.1 958 78.5
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1448.0 975 76.8
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1448.0 963 77.7
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1447.6 892 82.3
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1446.8 976 77.2
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1446.0 980 76.7
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1443.7 980 76.7
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1440.6 957 77.5
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1438.3 965 77.5
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1437.9 916 79.5
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1436.4 969 76.3
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1431.4 960 75.7
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1431.0 968 75.6
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1429.1 894 81.2
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1427.2 875 82.1
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1426.8 916 79.8
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1425.2 958 76.6
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1425.2 978 75.4
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1424.1 991 74.9
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1423.7 954 76.0
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1422.9 916 79.4
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1421.4 959 76.5
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1421.0 909 79.8
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1419.1 964 76.3
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1417.1 894 80.6
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1416.4 974 75.7
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1415.6 991 74.3
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1414.8 873 82.4
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1414.8 957 76.3
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1414.4 968 75.6
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1412.9 969 75.5
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1412.9 977 74.7
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1412.1 968 75.4
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1411.7 968 75.3
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1410.6 959 76.2
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1405.2 962 75.5
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1402.5 959 75.7
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1401.0 965 74.6
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1398.6 961 74.7
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1394.8 897 78.4
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1393.3 975 73.8
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1393.3 975 73.8
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1393.3 975 73.9
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1390.6 869 80.0
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1390.2 882 79.3
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1389.0 907 77.7
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1388.6 971 73.8
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1387.1 1000 72.8
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1382.1 889 78.3
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1381.7 888 78.8
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1381.3 901 77.7
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1377.5 949 75.3
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1377.1 889 77.8
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1377.1 972 73.6
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1377.1 889 77.5
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1374.4 872 80.4
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1374.0 888 78.2
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1373.2 890 77.9
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1373.2 863 79.1
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1372.8 990 72.8
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1372.8 891 77.4
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1371.3 858 81.6
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1370.9 890 77.4
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1370.9 868 78.7
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1370.9 858 80.2
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1370.5 890 77.3
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1370.5 890 77.3
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1369.4 880 78.5
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1369.0 931 76.3
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1368.6 852 80.4
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1367.8 950 73.2
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1367.1 874 78.1
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1365.5 879 77.5
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1365.1 889 77.2
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1364.4 845 81.3
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1364.4 889 77.1
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1363.6 889 76.9
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1363.6 874 78.0
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1362.8 889 76.8
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1361.7 874 78.8
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1360.5 897 76.8
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1359.4 880 77.5
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1358.2 874 78.3
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1357.0 873 78.8
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1356.3 852 80.3
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1355.9 875 78.6
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1355.1 872 78.1
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1355.1 844 81.6
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1351.7 843 81.3
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1351.3 956 72.9
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1349.3 875 77.9
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1344.7 897 76.6
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1344.3 878 76.5
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1344.3 902 75.2
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1332.4 894 74.9
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1332.0 897 74.6
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1329.7 854 78.2
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1322.0 1089 66.1
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1308.5 844 77.4
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1303.9 955 72.7
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1294.6 874 76.2
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1293.9 860 76.2
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1280.0 870 76.3
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1278.1 881 72.5
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1272.7 892 71.7
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1255.7 872 72.0
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1252.3 881 71.4
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1251.1 872 74.4
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1246.5 772 81.5
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1245.0 897 72.2
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1238.4 836 75.8
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1224.9 823 75.0
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1223.4 803 76.0
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1211.1 803 77.6
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1203.3 828 73.3
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1188.3 886 72.3
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1172.9 867 70.8
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1155.6 812 73.6
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1119.8 778 73.7
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1089.3 730 74.4
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1085.5 857 64.4
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1079.7 889 62.7
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 1.5e-279 966.5 631 77.3
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 6.5e-275 951.0 883 57.0
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 2.2e-270 936.0 632 74.8
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 1.9e-261 906.4 581 78.8
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.7e-252 875.9 509 85.9
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.6e-249 865.5 533 81.6
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 9.6e-234 814.3 909 50.9
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.5e-207 727.2 407 90.7
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 7.7e-199 698.4 497 75.1
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 1.1e-184 651.4 397 80.6
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 6.7e-179 632.1 708 50.0
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 1.4e-155 554.7 427 68.9
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 7.3e-141 505.8 347 73.2
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 2.2e-129 467.6 334 73.1
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.6e-124 450.3 379 65.2
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 2.1e-116 424.5 262 82.8
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 2.1e-95 354.8 302 64.2
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 1.2e-90 339.0 218 77.1
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 1.0e-62 246.1 270 54.8
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 9.4e-56 223.0 151 73.5
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 2.2e-52 211.8 188 61.7
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 8.3e-52 209.9 185 64.9
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 1.4e-46 192.6 119 78.2
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 2.1e-39 168.7 122 68.9
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 4.0e-30 137.9 85 78.8
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 1.2e-29 136.3 81 84.0
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 2.6e-29 135.2 83 80.7
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 7.5e-29 133.7 233 40.3
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.1e-27 129.8 88 70.5
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 5.6e-24 117.5 411 28.2
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 2.8e-23 115.2 90 67.8
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 1.1e-22 113.2 130 53.1
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 1.0e-17 96.7 56 76.8
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 9.5e-16 90.1 60 70.0
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 8.4e-12 77.0 51 74.5
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 1.1e-11 76.6 49 77.6
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 4.6e-10 71.2 68 60.3
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 1.3e-09 69.7 101 44.6
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 3.0e-09 68.6 44 77.3
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 4.3e-08 64.7 43 67.4
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.2e-07 63.2 49 65.3
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 1.4e-06 59.7 43 62.8


User provided reference genes

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