Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 4.9e-174 614.4 315 100.0
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 9.2e-96 354.4 289 66.1
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 1.0e-94 350.9 300 62.0
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 3.9e-94 349.0 262 69.8
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 8.6e-94 347.8 272 67.6
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 2.5e-93 346.3 295 61.7
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 2.5e-93 346.3 295 61.7
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 3.3e-93 345.9 301 60.5
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 7.3e-93 344.7 259 68.0
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 9.5e-93 344.4 302 59.6
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 8.1e-92 341.3 259 67.2
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 1.1e-91 340.9 319 60.8
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 1.8e-91 340.1 287 61.7
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 2.3e-91 339.7 438 47.9
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 2.3e-91 339.7 288 61.1
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 5.2e-91 338.6 286 62.6
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 6.8e-91 338.2 305 60.3
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 8.9e-91 337.8 304 59.2
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 8.9e-91 337.8 299 62.9
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 8.9e-91 337.8 298 62.8
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 2.0e-90 336.7 285 65.3
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 2.0e-90 336.7 285 63.5
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 2.6e-90 336.3 289 61.9
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 3.4e-90 335.9 296 60.8
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 4.4e-90 335.5 297 61.6
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 4.4e-90 335.5 293 61.1
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 5.8e-90 335.1 301 60.5
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 7.5e-90 334.7 299 60.2
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 1.7e-89 333.6 301 59.5
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 1.1e-88 330.9 299 62.9
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 1.9e-88 330.1 278 64.0
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 2.4e-88 329.7 277 64.3
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 3.2e-88 329.3 304 59.9
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 7.1e-88 328.2 298 60.7
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 7.1e-88 328.2 298 58.7
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 1.6e-87 327.0 297 60.6
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 2.1e-87 326.6 295 60.7
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 3.5e-87 325.9 297 60.6
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 4.6e-87 325.5 276 63.0
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 6.0e-87 325.1 275 63.6
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 6.0e-87 325.1 290 60.7
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 1.7e-86 323.6 291 60.5
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 3.0e-86 322.8 306 56.5
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 1.1e-85 320.9 259 66.4
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 1.1e-85 320.9 300 60.0
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 5.6e-85 318.5 324 54.0
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 9.5e-85 317.8 304 57.6
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 1.6e-84 317.0 269 62.1
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 4.7e-84 315.5 265 63.4
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 6.2e-84 315.1 247 66.8
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 1.4e-83 313.9 266 62.0
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 1.4e-83 313.9 272 62.5
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 1.8e-83 313.5 288 58.7
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 2.4e-83 313.2 281 59.8
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 3.1e-83 312.8 302 57.9
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 5.2e-83 312.0 255 64.3
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 6.8e-83 311.6 270 63.0
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 6.8e-83 311.6 252 63.9
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 8.9e-83 311.2 265 62.6
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 1.2e-82 310.8 260 61.9
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 1.5e-82 310.5 248 62.1
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 2.0e-82 310.1 288 58.0
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 2.6e-82 309.7 283 58.0
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 3.4e-82 309.3 286 57.7
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 5.8e-82 308.5 269 60.2
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 1.7e-81 307.0 301 55.1
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 2.2e-81 306.6 299 57.9
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 2.2e-81 306.6 295 56.6
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 2.9e-81 306.2 294 57.8
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 2.9e-81 306.2 258 62.0
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 4.9e-81 305.4 293 57.7
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 8.4e-81 304.7 291 57.0
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 1.4e-80 303.9 227 68.3
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 1.9e-80 303.5 285 58.2
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 2.4e-80 303.1 279 60.9
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 9.2e-80 301.2 288 59.4
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 1.2e-79 300.8 288 58.7
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 2.7e-79 299.7 298 56.0
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 3.5e-79 299.3 340 48.8
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 6.0e-79 298.5 263 62.4
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 1.3e-78 297.4 246 59.8
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 1.7e-78 297.0 332 50.6
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 3.0e-78 296.2 285 57.2
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 3.0e-78 296.2 296 56.1
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 3.0e-78 296.2 296 56.1
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 3.0e-78 296.2 285 55.8
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 3.9e-78 295.8 296 56.4
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 3.9e-78 295.8 228 65.8
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 5.1e-78 295.4 304 57.2
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 5.1e-78 295.4 273 60.1
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 6.6e-78 295.0 296 55.4
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 1.5e-77 293.9 253 61.7
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 4.3e-77 292.4 292 55.5
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 2.1e-76 290.0 316 54.7
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 1.4e-72 277.3 295 53.6
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 1.7e-70 270.4 361 47.6
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 1.5e-69 267.3 228 60.1
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 7.3e-69 265.0 276 51.4
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 2.4e-67 260.0 187 70.1
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 4.5e-66 255.8 248 54.0
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 6.4e-65 251.9 232 59.9
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 8.4e-65 251.5 265 50.6
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 2.1e-63 246.9 186 66.7
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 1.8e-62 243.8 215 61.4
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 1.8e-59 233.8 206 64.1
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 2.4e-59 233.4 264 51.9
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 7.6e-58 228.4 233 51.9
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 2.2e-57 226.9 211 56.9
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 2.7e-55 219.9 190 60.0
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 3.5e-55 219.5 251 50.2
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 3.0e-54 216.5 273 46.5
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 1.6e-47 194.1 281 41.6
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 6.0e-47 192.2 146 63.0
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 1.1e-45 188.0 276 40.9
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 1.6e-44 184.1 251 44.2
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 2.8e-44 183.3 211 51.7
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 6.3e-44 182.2 197 54.8
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 2.3e-38 163.7 146 63.7
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 7.9e-31 138.7 176 43.2
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 9.7e-29 131.7 119 60.5
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 2.5e-24 117.1 160 41.9
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 5.2e-22 109.4 77 67.5
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 4.5e-18 96.3 78 55.1


User provided reference genes

Program Settings