Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01784 Beta vulgaris HOM05D002103 ORTHO05D004020 2.1e-109 399.1 204 100.0
AUR62039305 Chenopodium quinoa HOM05D002103 ORTHO05D004020 3.8e-58 228.8 179 73.7
Ah.05g168830 Amaranthus hybridus HOM05D002103 ORTHO05D004020 6.4e-58 228.0 164 73.8
AUR62022429 Chenopodium quinoa HOM05D002103 ORTHO05D004020 7.9e-48 194.5 133 80.5
TAR625G1123 Trochodendron aralioides HOM05D002103 ORTHO05D004020 1.8e-39 166.8 160 60.6
Manes.05G171940 Manihot esculenta HOM05D002103 ORTHO05D004020 1.9e-38 163.3 151 58.9
Manes.05G172000 Manihot esculenta HOM05D002103 ORTHO05D004020 1.9e-38 163.3 151 58.9
TAR381G0883 Trochodendron aralioides HOM05D002103 ORTHO05D004020 3.3e-38 162.5 164 57.3
Manes.05G171920 Manihot esculenta HOM05D002103 ORTHO05D004020 4.3e-38 162.2 151 58.3
CSS0022390 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 5.7e-38 161.8 145 61.4
Atru.chr13.650 Acer truncatum HOM05D002103 ORTHO05D004020 1.3e-37 160.6 162 54.3
CANSAT01G2416 Cannabis sativa HOM05D002103 ORTHO05D004020 3.7e-37 159.1 164 54.9
Actinidia23265 Actinidia chinensis HOM05D002103 ORTHO05D004020 8.2e-37 157.9 141 61.7
Dinv35973 Davidia involucrata HOM05D002103 ORTHO05D004020 1.4e-36 157.1 152 59.9
Cfa018527 Carpinus fangiana HOM05D002103 ORTHO05D004020 2.4e-36 156.4 154 56.5
Hma1.2p1_0982F.1_g243900 Hydrangea macrophylla HOM05D002103 ORTHO05D004020 2.4e-36 156.4 151 58.3
GSVIVG01009523001 Vitis vinifera HOM05D002103 ORTHO05D004020 2.4e-36 156.4 164 56.7
Dinv39328 Davidia involucrata HOM05D002103 ORTHO05D004020 3.1e-36 156.0 152 57.2
CiPaw.16G045800 Carya illinoinensis HOM05D002103 ORTHO05D004020 6.9e-36 154.8 153 59.5
Duzib093G0320 Durio zibethinus HOM05D002103 ORTHO05D004020 1.2e-35 154.1 167 53.3
Potri.014G031900 Populus trichocarpa HOM05D002103 ORTHO05D004020 2.6e-35 152.9 153 53.6
Thecc.08G010900 Theobroma cacao HOM05D002103 ORTHO05D004020 2.6e-35 152.9 165 53.3
Hund17586 Selenicereus undatus HOM05D002103 ORTHO05D004020 4.5e-35 152.1 108 73.1
COL.COLO4_26478 Corchorus olitorius HOM05D002103 ORTHO05D004020 5.9e-35 151.8 165 53.3
Nn1g05835 Nelumbo nucifera HOM05D002103 ORTHO05D004020 1.3e-34 150.6 159 54.7
MELO3C010883.2 Cucumis melo HOM05D002103 ORTHO05D004020 3.8e-34 149.1 164 51.8
Duzib041G0561 Durio zibethinus HOM05D002103 ORTHO05D004020 8.5e-34 147.9 163 52.8
Sed0003893 Sechium edule HOM05D002103 ORTHO05D004020 8.5e-34 147.9 164 51.8
CsaV3_2G028030 Cucumis sativus L. HOM05D002103 ORTHO05D004020 1.9e-33 146.7 164 50.6
Prupe.1G438400 Prunus persica HOM05D002103 ORTHO05D004020 1.9e-33 146.7 165 53.3
Gohir.A01G118700 Gossypium hirsutum HOM05D002103 ORTHO05D004020 2.5e-33 146.4 170 52.4
Gohir.D06G015300 Gossypium hirsutum HOM05D002103 ORTHO05D004020 4.2e-33 145.6 150 54.7
PGR083G1022 Punica granatum HOM05D002103 ORTHO05D004020 5.5e-33 145.2 154 55.2
Manes.18G032500 Manihot esculenta HOM05D002103 ORTHO05D004020 7.2e-33 144.8 156 52.6
Sed0011304 Sechium edule HOM05D002103 ORTHO05D004020 7.2e-33 144.8 164 51.8
Gohir.A06G017200 Gossypium hirsutum HOM05D002103 ORTHO05D004020 9.4e-33 144.4 150 54.0
Gorai.002G131200 Gossypium raimondii HOM05D002103 ORTHO05D004020 9.4e-33 144.4 170 51.8
Gohir.D01G106900 Gossypium hirsutum HOM05D002103 ORTHO05D004020 1.6e-32 143.7 151 55.6
CiPaw.15G061600 Carya illinoinensis HOM05D002103 ORTHO05D004020 2.1e-32 143.3 155 52.9
Sabra02G0100000 Salix brachista HOM05D002103 ORTHO05D004020 7.9e-32 141.4 172 47.7
Ciclev10001804m.g Citrus clementina HOM05D002103 ORTHO05D004020 2.3e-31 139.8 166 48.8
FAN15G2894 Fragaria x ananassa HOM05D002103 ORTHO05D004020 3.0e-31 139.4 161 49.7
TWI56G0490 Tripterygium wilfordii HOM05D002103 ORTHO05D004020 3.0e-31 139.4 166 50.0
ClCG08G015730 Citrullus lanatus HOM05D002103 ORTHO05D004020 5.1e-31 138.7 194 44.3
Nn5g30229 Nelumbo nucifera HOM05D002103 ORTHO05D004020 5.1e-31 138.7 159 50.9
FvH4_2g34620 Fragaria vesca HOM05D002103 ORTHO05D004020 8.8e-31 137.9 161 49.7
MD08G1103400 Malus domestica HOM05D002103 ORTHO05D004020 1.1e-30 137.5 166 51.2
FAN20G2977 Fragaria x ananassa HOM05D002103 ORTHO05D004020 7.4e-30 134.8 170 46.5
Peaxi162Scf00528g00417 Petunia axillaris HOM05D002103 ORTHO05D004020 9.7e-30 134.4 165 47.9
Gorai.010G018100 Gossypium raimondii HOM05D002103 ORTHO05D004020 1.3e-29 134.0 171 46.8
MD15G1084700 Malus domestica HOM05D002103 ORTHO05D004020 1.3e-29 134.0 166 48.8
Migut.N02702 Erythranthe guttata HOM05D002103 ORTHO05D004020 1.7e-29 133.7 137 54.7
TWI36G1154 Tripterygium wilfordii HOM05D002103 ORTHO05D004020 1.7e-29 133.7 166 48.8
Nitab4.5_0001101g0080 Nicotiana tabacum HOM05D002103 ORTHO05D004020 2.8e-29 132.9 162 48.1
RcHm_v2.0_Chr6g0307681 Rosa chinensis HOM05D002103 ORTHO05D004020 2.8e-29 132.9 156 50.0
FAN27G3124 Fragaria x ananassa HOM05D002103 ORTHO05D004020 3.7e-29 132.5 170 45.3
MBI02_g17341_MAGBIO Magnolia biondii HOM05D002103 ORTHO05D004020 4.8e-29 132.1 175 43.4
SGA_v2.0_scaffold14G07034 Striga asiatica HOM05D002103 ORTHO05D004020 4.8e-29 132.1 182 46.2
Peaxi162Scf00929g00314 Petunia axillaris HOM05D002103 ORTHO05D004020 8.2e-29 131.3 154 51.3
Cc10_g04320 Coffea canephora HOM05D002103 ORTHO05D004020 1.1e-28 131.0 138 54.3
Eucgr.F00240 Eucalyptus grandis HOM05D002103 ORTHO05D004020 9.1e-28 127.9 160 46.2
Nitab4.5_0000686g0060 Nicotiana tabacum HOM05D002103 ORTHO05D004020 1.2e-27 127.5 154 48.1
vmacro21537 Vaccinium macrocarpon HOM05D002103 ORTHO05D004020 1.2e-27 127.5 124 58.9
DCAR_019463 Daucus carota HOM05D002103 ORTHO05D004020 1.5e-27 127.1 152 48.7
PGSC0003DMG400007986 Solanum tuberosum HOM05D002103 ORTHO05D004020 1.5e-27 127.1 154 48.7
Oeu009550.1 Olea europaea HOM05D002103 ORTHO05D004020 2.6e-27 126.3 148 50.7
Sc02g0007040 Simmondsia chinensis HOM05D002103 ORTHO05D004020 2.6e-27 126.3 122 51.6
Glyma.06G038500 Glycine max HOM05D002103 ORTHO05D004020 7.7e-27 124.8 170 44.1
HanXRQChr02g0037661 Helianthus annuus HOM05D002103 ORTHO05D004020 7.7e-27 124.8 158 44.3
QL02p005375 Quercus lobata HOM05D002103 ORTHO05D004020 1.0e-26 124.4 121 57.9
CAN.G371.35 Capsicum annuum HOM05D002103 ORTHO05D004020 2.2e-26 123.2 147 48.3
CAN.G52.6 Capsicum annuum HOM05D002103 ORTHO05D004020 8.5e-26 121.3 162 45.7
MSTRG.24326 Avicennia marina HOM05D002103 ORTHO05D004020 1.4e-25 120.6 195 39.5
Glyma.04G037600 Glycine max HOM05D002103 ORTHO05D004020 1.4e-25 120.6 149 47.0
VMungo1309G0516 Vigna mungo HOM05D002103 ORTHO05D004020 1.4e-25 120.6 149 47.7
Aqoxy6G01360 Aquilegia oxysepala HOM05D002103 ORTHO05D004020 1.9e-25 120.2 153 44.4
Phvul.001G021000 Phaseolus vulgaris HOM05D002103 ORTHO05D004020 2.5e-25 119.8 153 46.4
Medtr1g019780 Medicago truncatula HOM05D002103 ORTHO05D004020 3.2e-25 119.4 175 43.4
Psat6g012640 Pisum sativum HOM05D002103 ORTHO05D004020 5.5e-25 118.6 161 43.5
THA.LOC104803681 Tarenaya hassleriana HOM05D002103 ORTHO05D004020 9.4e-25 117.9 147 46.9
BraA08t33716Z Brassica rapa HOM05D002103 ORTHO05D004020 1.2e-24 117.5 149 47.7
BcaC01g00993 Brassica carinata HOM05D002103 ORTHO05D004020 1.6e-24 117.1 149 47.7
A08p17650 Brassica napus HOM05D002103 ORTHO05D004020 1.6e-24 117.1 149 47.7
C03p86710 Brassica napus HOM05D002103 ORTHO05D004020 1.6e-24 117.1 149 47.7
BolC3t20967H Brassica oleracea HOM05D002103 ORTHO05D004020 1.6e-24 117.1 149 47.7
AL7G18190 Arabidopsis lyrata HOM05D002103 ORTHO05D004020 2.7e-24 116.3 149 47.7
Lj5g0018432 Lotus japonicus HOM05D002103 ORTHO05D004020 2.7e-24 116.3 170 42.4
Lalb_Chr23g0266991 Lupinus albus HOM05D002103 ORTHO05D004020 2.7e-24 116.3 155 45.8
Sp7g31080 Schrenkiella parvula HOM05D002103 ORTHO05D004020 2.7e-24 116.3 149 47.7
CSS0022665 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 3.6e-24 115.9 145 46.9
Lsat_1_v5_gn_1_20261 Lactuca sativa HOM05D002103 ORTHO05D004020 4.7e-24 115.5 150 46.7
Carub.0007s0711 Capsella rubella HOM05D002103 ORTHO05D004020 6.1e-24 115.2 149 47.7
CARHR241420 Cardamine hirsuta HOM05D002103 ORTHO05D004020 6.1e-24 115.2 157 47.1
BcaC09g52145 Brassica carinata HOM05D002103 ORTHO05D004020 7.9e-24 114.8 149 47.7
BolC1t00510H Brassica oleracea HOM05D002103 ORTHO05D004020 7.9e-24 114.8 149 47.7
Thhalv10025691m.g Eutrema salsugineum HOM05D002103 ORTHO05D004020 7.9e-24 114.8 149 47.7
Cpa.g.sc49.1 Carica papaya HOM05D002103 ORTHO05D004020 1.0e-23 114.4 121 49.6
Lalb_Chr14g0368771 Lupinus albus HOM05D002103 ORTHO05D004020 1.0e-23 114.4 147 44.9
BcaB03g12802 Brassica carinata HOM05D002103 ORTHO05D004020 1.8e-23 113.6 147 47.6
BcaC09g52142 Brassica carinata HOM05D002103 ORTHO05D004020 2.3e-23 113.2 149 47.0
BraA01t00472Z Brassica rapa HOM05D002198 ORTHO05D004020 2.3e-23 113.2 149 47.0
Phvul.009G063800 Phaseolus vulgaris HOM05D002103 ORTHO05D004020 2.3e-23 113.2 148 45.9
TPR.G13687 Trifolium pratense HOM05D002103 ORTHO05D004020 3.0e-23 112.8 162 43.8
A01p04900 Brassica napus HOM05D002198 ORTHO05D004020 3.9e-23 112.5 149 47.0
SalBow7G3772 Salvia bowleyana HOM05D002103 ORTHO05D004020 3.9e-23 112.5 150 46.7
BolC3t20965H Brassica oleracea HOM05D002103 ORTHO05D004020 5.2e-23 112.1 149 46.3
CSS0001953 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 5.2e-23 112.1 134 56.0
VMungo0647G0899 Vigna mungo HOM05D002103 ORTHO05D004020 5.2e-23 112.1 153 43.8
Sopen07g013400 Solanum pennellii HOM05D002103 ORTHO05D004020 8.8e-23 111.3 162 43.2
Lalb_Chr22g0355191 Lupinus albus HOM05D002103 ORTHO05D004020 1.1e-22 110.9 149 45.6
arahy.Tifrunner.gnm1.ann1.75Q1P4 Arachis hypogaea HOM05D002103 ORTHO05D004020 2.0e-22 110.2 131 48.9
arahy.Tifrunner.gnm1.ann1.Z2DAXP Arachis hypogaea HOM05D002103 ORTHO05D004020 2.0e-22 110.2 131 48.9
AT4G33380 Arabidopsis thaliana HOM05D002103 ORTHO05D004020 5.7e-22 108.6 149 45.6
Glyma.14G082000 Glycine max HOM05D002103 ORTHO05D004020 5.7e-22 108.6 157 42.0
Glyma.17G243300 Glycine max HOM05D002103 ORTHO05D004020 7.4e-22 108.2 161 40.4
Psat0s3123g0080 Pisum sativum HOM05D002103 ORTHO05D004020 1.7e-21 107.1 149 42.3
Medtr3g101480 Medicago truncatula HOM05D002103 ORTHO05D004020 8.2e-21 104.8 150 43.3
Nitab4.5_0001024g0010 Nicotiana tabacum HOM05D002103 ORTHO05D004020 1.1e-20 104.4 122 47.5
ATR0100G056 Amborella trichopoda HOM05D002103 ORTHO05D004020 1.4e-20 104.0 147 46.3
Os06g0214100 Oryza sativa ssp. japonica HOM05D002103 ORTHO05D004020 7.7e-19 98.2 135 45.2
Os02g0761600 Oryza sativa ssp. japonica HOM05D002103 ORTHO05D004020 1.3e-18 97.4 161 41.0
Potri.002G127700 Populus trichocarpa HOM05D002103 ORTHO05D004020 1.3e-18 97.4 108 46.3
CDE02G3402 Ceratophyllum demersum HOM05D002103 ORTHO05D004020 1.7e-18 97.1 133 44.4
Duzib116G0153 Durio zibethinus HOM05D002103 ORTHO05D004020 6.5e-18 95.1 106 47.2
Prupe.3G111800 Prunus persica HOM05D002103 ORTHO05D004020 1.9e-17 93.6 143 44.8
Aa31LG3G7420 Aethionema arabicum HOM05D002103 ORTHO05D004020 2.5e-17 93.2 143 43.4
TPR.G35873 Trifolium pratense HOM05D002103 ORTHO05D004020 5.5e-17 92.0 133 42.9
PSO541G4087 Papaver somniferum HOM05D002103 ORTHO05D004020 2.1e-16 90.1 97 49.5
PSO675G6562 Papaver somniferum HOM05D002103 ORTHO05D004020 2.7e-16 89.7 97 49.5
Solyc04g079160.4 Solanum lycopersicum HOM05D002103 ORTHO05D004020 2.3e-15 86.7 114 43.9
Lj4A775T63 Lonicera japonica HOM05D002103 ORTHO05D004020 4.0e-15 85.9 116 46.6
Zm00001eb255700 Zea mays HOM05D002103 ORTHO05D004020 6.7e-15 85.1 140 40.0
RcHm_v2.0_Chr6g0307521 Rosa chinensis HOM05D002103 ORTHO05D004020 2.6e-14 83.2 174 35.6
Zm00001eb373130 Zea mays HOM05D002103 ORTHO05D004020 3.3e-14 82.8 136 39.0
Rhsim06G0048300 Rhododendron simsii HOM05D002103 ORTHO05D004020 4.4e-14 82.4 84 52.4
SEGI_28946 Sequoiadendron giganteum HOM05D002103 ORTHO05D004020 1.7e-13 80.5 121 40.5
SalBow3G3013 Salvia bowleyana HOM05D002103 ORTHO05D004020 2.2e-13 80.1 101 48.5
Lsat_1_v5_gn_6_113661 Lactuca sativa HOM05D002103 ORTHO05D004020 9.1e-12 74.7 105 41.0
Sopen04g032770 Solanum pennellii HOM05D002103 ORTHO05D004020 1.6e-11 73.9 98 44.9
HPP92_027223 Vanilla planifolia HOM05D002103 ORTHO05D004020 3.5e-11 72.8 139 35.3
Zm00001eb288960 Zea mays HOM05D002103 ORTHO05D001928 3.5e-11 72.8 153 32.7
ECA246G3192 Erigeron canadensis HOM05D002103 ORTHO05D004020 5.9e-11 72.0 86 46.5
Mapoly0020s0146 Marchantia polymorpha HOM05D002103 ORTHO05D007786 5.9e-11 72.0 143 31.5
arahy.Tifrunner.gnm1.ann1.3IZ1KA Arachis hypogaea HOM05D002103 ORTHO05D004020 6.5e-10 68.6 99 39.4
arahy.Tifrunner.gnm1.ann1.II6H71 Arachis hypogaea HOM05D002103 ORTHO05D004020 6.5e-10 68.6 99 39.4
arahy.Tifrunner.gnm1.ann1.YT15EQ Arachis hypogaea HOM05D002103 ORTHO05D004020 6.5e-10 68.6 99 39.4
ECA247G1496 Erigeron canadensis HOM05D002103 ORTHO05D004020 1.1e-09 67.8 107 35.5
RcHm_v2.0_Chr6g0258511 Rosa chinensis HOM05D002103 ORTHO05D004020 6.1e-08 62.0 79 46.8
Zm00001eb228380 Zea mays HOM05D002103 ORTHO05D004020 1.8e-07 60.5 130 34.6
MSTRG.22266 Avicennia marina HOM05D002103 ORTHO05D004020 3.0e-07 59.7 69 49.3
SMO144G0051 Selaginella moellendorffii HOM05D002103 ORTHO05D007786 3.0e-07 59.7 135 30.4
Lj4A54G47 Lonicera japonica HOM05D002103 ORTHO05D004020 8.8e-07 58.2 59 59.3
Gorai.010G077200 Gossypium raimondii HOM05D002103 ORTHO05D004020 9.8e-06 54.7 68 44.1


User provided reference genes

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