Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1775.0 890 100.0
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1492.2 836 89.2
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1476.5 859 86.6
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1426.8 834 85.7
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1371.7 836 82.3
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1371.7 833 81.8
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1365.9 832 81.6
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1363.2 836 81.3
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1356.3 838 80.8
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1352.4 829 81.1
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1350.5 834 80.8
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1347.4 824 81.8
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1344.7 831 80.9
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1343.2 835 80.7
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1342.4 835 80.0
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1341.3 820 80.4
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1338.6 834 80.2
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1338.2 827 80.9
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1335.5 835 80.5
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1333.5 838 80.2
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1333.5 838 80.2
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1333.2 836 80.7
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1332.0 835 79.5
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1331.6 837 79.8
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1331.6 834 79.9
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1329.7 834 79.3
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1329.7 838 79.4
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1328.2 827 80.2
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1328.2 838 80.1
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1327.8 832 80.2
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1327.4 834 79.3
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1323.9 832 79.6
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1323.9 837 79.5
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1323.9 834 80.0
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1323.5 837 79.3
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1322.4 836 79.1
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1322.0 837 79.5
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1321.6 837 79.3
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1321.2 835 79.0
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1320.4 837 79.2
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1320.4 836 79.9
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1320.1 836 79.1
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1317.4 836 78.1
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1315.8 866 76.6
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1315.8 850 78.4
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1315.8 834 78.8
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1310.8 884 75.8
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1310.4 830 79.4
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1310.0 834 78.7
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1310.0 835 78.4
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1308.1 836 79.1
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1307.7 836 77.8
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1306.6 834 78.9
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1305.8 820 79.9
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1305.4 836 78.9
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1305.0 834 79.0
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1302.3 867 72.5
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1302.0 816 79.5
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1302.0 816 79.5
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1301.6 807 80.9
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1300.4 807 79.6
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1299.3 821 79.7
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1297.3 816 79.8
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1296.6 815 80.0
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1293.5 805 80.2
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1292.7 825 78.3
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1290.0 836 77.2
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1288.5 793 80.6
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1288.1 815 79.3
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1287.7 839 77.9
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1285.0 817 79.9
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1284.2 818 78.9
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1282.7 818 78.2
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1282.7 788 80.8
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1282.7 798 80.2
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1282.7 835 78.1
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1276.9 833 78.0
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1274.2 812 78.3
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1272.3 788 80.2
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1271.5 812 79.4
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1270.4 817 77.7
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1265.0 815 78.0
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1264.2 812 78.2
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1262.7 808 78.7
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1259.2 809 78.0
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1259.2 786 80.3
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1257.7 811 78.3
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1255.7 810 77.8
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1255.7 810 77.8
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1255.7 810 77.8
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1255.7 810 77.8
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1255.4 810 78.3
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1255.4 810 78.3
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1255.4 810 78.3
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1255.0 819 76.2
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1250.3 787 80.1
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1250.0 809 78.4
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1249.6 819 76.1
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1248.8 787 79.9
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1248.0 812 77.2
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1245.0 803 78.6
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1242.6 786 79.6
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1238.8 849 75.0
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1236.9 786 79.4
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1234.9 812 77.8
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1234.6 807 77.0
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1233.8 803 76.7
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1231.9 865 73.4
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1231.9 829 76.2
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1230.7 862 73.1
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1230.7 803 78.1
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1224.5 869 71.8
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1220.3 779 77.9
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1217.2 755 81.1
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1216.8 827 76.1
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1216.1 818 72.0
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1215.3 814 76.2
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1214.5 814 76.3
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1213.7 808 76.1
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1213.0 814 76.7
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1213.0 780 77.7
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1205.3 837 73.7
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1204.1 812 75.2
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1201.0 750 80.7
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1200.3 834 74.3
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1200.3 820 75.4
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1199.1 714 82.9
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1198.0 752 79.4
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1196.4 814 74.0
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1192.6 814 75.6
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1175.2 782 76.7
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1169.5 852 71.5
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1169.1 806 74.7
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1164.8 832 73.6
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1163.3 811 72.4
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1159.1 816 71.1
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1157.5 878 69.4
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1137.5 808 71.3
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1133.2 806 71.7
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1126.3 753 73.8
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1098.6 732 77.3
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 9.3e-295 1016.9 806 68.0
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 9.4e-271 937.2 622 71.4
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 4.4e-268 928.3 568 77.3
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.4e-258 896.7 815 61.6
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 1.3e-256 890.2 551 81.5
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 8.3e-251 870.9 580 72.6
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 3.8e-248 862.1 514 80.9
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 6.9e-173 612.1 708 51.1
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 3.6e-145 520.0 436 61.0
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 6.5e-139 499.2 356 77.2
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 7.0e-125 452.6 299 73.6
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 1.1e-112 412.1 318 72.3
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.2e-100 372.1 397 53.7
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 3.2e-93 347.4 261 67.0
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.7e-89 333.6 581 45.3
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 4.5e-63 247.3 153 76.5
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 3.0e-59 234.6 156 75.6
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 6.1e-44 183.7 165 57.0
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 9.4e-37 159.8 479 30.1
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 3.1e-32 144.8 463 27.4
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 1.3e-30 139.4 76 85.5
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.5e-29 135.2 472 26.1
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 9.4e-29 133.3 434 27.6
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 9.7e-26 123.2 62 91.9
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.8e-25 121.7 96 65.6
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.1e-24 119.8 472 26.7
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 2.5e-21 108.6 65 73.8
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.2e-17 95.5 100 49.0
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 4.1e-16 91.3 221 32.1
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 1.0e-14 86.7 78 55.1
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-14 85.1 260 26.2
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 7.2e-13 80.5 143 38.5
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 3.1e-08 65.1 140 30.7
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 5.4e-08 64.3 70 47.1
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 2.7e-07 62.0 38 78.9


User provided reference genes

Program Settings