Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 3.5e-129 464.9 229 100.0
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 1.0e-120 436.8 227 93.0
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 6.6e-120 434.1 227 92.5
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 1.1e-119 433.3 227 92.1
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 2.5e-119 432.2 227 91.6
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 2.5e-119 432.2 227 91.6
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 3.3e-119 431.8 227 92.1
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 5.6e-119 431.0 229 90.0
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 5.6e-119 431.0 229 90.0
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 5.6e-119 431.0 227 90.7
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 7.3e-119 430.6 227 91.6
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 9.6e-119 430.3 227 90.3
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 1.3e-118 429.9 227 91.2
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 1.6e-118 429.5 227 91.2
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 1.6e-118 429.5 227 91.2
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 2.1e-118 429.1 227 91.2
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 2.1e-118 429.1 227 91.2
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 2.8e-118 428.7 227 92.1
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 3.6e-118 428.3 229 90.0
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 3.6e-118 428.3 227 90.7
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 4.8e-118 427.9 227 90.3
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 8.1e-118 427.2 227 89.9
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 8.1e-118 427.2 227 89.9
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 1.1e-117 426.8 227 90.3
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 1.1e-117 426.8 227 89.9
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 1.1e-117 426.8 227 90.3
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 1.4e-117 426.4 227 90.3
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 1.8e-117 426.0 227 89.4
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 1.8e-117 426.0 227 89.9
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 1.8e-117 426.0 227 90.7
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 1.8e-117 426.0 227 90.3
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 2.4e-117 425.6 229 89.5
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.4e-117 425.6 226 90.3
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 2.4e-117 425.6 226 90.3
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 3.1e-117 425.2 227 89.4
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 3.1e-117 425.2 227 89.9
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 3.1e-117 425.2 227 89.4
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 4.0e-117 424.9 227 89.9
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 6.9e-117 424.1 227 89.4
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 6.9e-117 424.1 227 89.0
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 9.0e-117 423.7 226 89.8
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.5e-116 422.9 227 89.0
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.5e-116 422.9 227 89.9
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 1.5e-116 422.9 227 89.0
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 3.4e-116 421.8 227 89.0
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 7.6e-116 420.6 227 89.4
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 9.9e-116 420.2 227 89.0
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 9.9e-116 420.2 227 87.7
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 1.3e-115 419.9 227 89.0
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 1.7e-115 419.5 227 89.4
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 2.2e-115 419.1 227 88.5
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 2.2e-115 419.1 227 88.5
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 2.2e-115 419.1 227 88.1
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 4.9e-115 417.9 227 87.2
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 1.1e-114 416.8 227 88.1
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.4e-114 416.4 227 88.5
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 1.4e-114 416.4 227 87.7
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 3.2e-114 415.2 227 87.2
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 3.2e-114 415.2 227 88.1
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 4.2e-114 414.8 227 88.1
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 5.4e-114 414.5 229 87.8
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 9.3e-114 413.7 227 87.2
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.2e-113 413.3 227 87.2
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 2.7e-113 412.1 227 87.7
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 2.7e-113 412.1 227 87.2
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 4.6e-113 411.4 229 87.3
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 7.9e-113 410.6 229 85.2
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 7.9e-113 410.6 227 86.8
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 1.0e-112 410.2 229 86.9
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 5.1e-112 407.9 229 86.5
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 5.1e-112 407.9 229 86.5
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 5.1e-112 407.9 229 86.5
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 5.1e-112 407.9 229 86.5
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 5.1e-112 407.9 229 86.5
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 6.7e-112 407.5 220 87.7
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 6.7e-112 407.5 227 85.5
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 1.1e-111 406.8 229 86.0
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 1.3e-110 403.3 229 84.7
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 1.3e-110 403.3 227 88.1
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.1e-110 402.5 227 86.3
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 2.1e-110 402.5 227 85.5
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 1.1e-109 400.2 229 84.3
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 1.1e-109 400.2 238 83.2
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 1.8e-109 399.4 229 83.8
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 5.3e-109 397.9 229 83.0
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 5.3e-109 397.9 227 81.1
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 6.9e-109 397.5 229 83.0
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 9.0e-109 397.1 229 83.0
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 1.5e-108 396.4 227 80.6
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 2.0e-108 396.0 226 82.7
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 2.6e-108 395.6 229 82.5
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 5.8e-108 394.4 256 78.1
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 5.8e-108 394.4 226 81.9
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 9.9e-108 393.7 229 82.5
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 1.9e-106 389.4 227 80.2
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 2.7e-105 385.6 227 81.5
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 4.6e-105 384.8 204 92.6
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 3.0e-104 382.1 227 79.3
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 2.8e-102 375.6 202 89.1
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 1.8e-101 372.9 227 77.5
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 3.1e-101 372.1 201 89.1
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 3.1e-101 372.1 201 89.1
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 5.8e-100 367.9 227 75.8
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 1.3e-99 366.7 227 80.2
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 2.5e-98 362.5 200 84.5
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 4.2e-98 361.7 227 72.7
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 9.3e-98 360.5 228 78.9
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 3.5e-97 358.6 185 95.1
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.3e-96 356.7 226 72.1
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.3e-96 356.7 226 72.1
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 3.0e-96 355.5 190 91.6
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 3.9e-96 355.1 187 92.5
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 5.1e-96 354.8 191 90.1
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.5e-95 353.2 191 90.1
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.9e-95 352.8 250 72.8
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 2.2e-94 349.4 219 79.9
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 6.3e-94 347.8 231 75.8
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 1.4e-93 346.7 187 90.9
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 5.3e-93 344.7 229 73.4
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 2.0e-92 342.8 227 74.9
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 4.5e-92 341.7 185 91.9
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 2.2e-91 339.3 226 69.5
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 1.4e-90 336.7 357 54.3
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 1.8e-85 319.7 226 69.9
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 1.4e-82 310.1 160 92.5
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 4.7e-81 305.1 164 90.9
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.2e-75 286.2 162 85.2
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.0e-68 263.1 162 76.5
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 3.2e-58 229.2 120 89.2
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 2.3e-56 223.0 147 70.7
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 3.0e-56 222.6 131 78.6
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 6.0e-36 155.2 134 61.2
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 8.6e-27 124.8 69 84.1
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 3.4e-23 112.8 62 79.0
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 3.3e-18 96.3 149 41.6
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 3.6e-17 92.8 122 49.2
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 1.5e-15 87.4 81 55.6
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.6e-15 86.7 45 86.7
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.4e-13 80.9 140 38.6
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 4.6e-12 75.9 64 57.8
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 7.3e-10 68.6 49 65.3
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 4.0e-08 62.8 82 47.6


User provided reference genes

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