Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01743 Beta vulgaris HOM05D003817 ORTHO05D089041 1.2e-123 446.4 212 100.0
EL10Ac6g13914 Beta vulgaris HOM05D003817 ORTHO05D004790 2.4e-84 315.8 214 73.8
AUR62017459 Chenopodium quinoa HOM05D003817 ORTHO05D004790 1.3e-80 303.5 214 69.6
AUR62032527 Chenopodium quinoa HOM05D003817 ORTHO05D004790 1.3e-80 303.5 214 69.6
Hund12915 Selenicereus undatus HOM05D003817 ORTHO05D004790 2.6e-78 295.8 214 66.8
Sc03g0005450 Simmondsia chinensis HOM05D003817 ORTHO05D004790 2.9e-77 292.4 214 66.8
CANSAT64G2350 Cannabis sativa HOM05D003817 ORTHO05D004790 6.4e-77 291.2 218 65.1
Eucgr.G01905 Eucalyptus grandis HOM05D003817 ORTHO05D004790 1.9e-76 289.7 218 65.1
CiPaw.03G114200 Carya illinoinensis HOM05D003817 ORTHO05D004790 7.1e-76 287.7 214 65.4
Aqoxy5G02922 Aquilegia oxysepala HOM05D003817 ORTHO05D004790 2.7e-75 285.8 218 64.7
RcHm_v2.0_Chr2g0176771 Rosa chinensis HOM05D003817 ORTHO05D004790 2.7e-75 285.8 214 66.4
Manes.04G095800 Manihot esculenta HOM05D003817 ORTHO05D004790 3.5e-75 285.4 214 65.0
PGR042G3037 Punica granatum HOM05D003817 ORTHO05D004790 3.5e-75 285.4 214 65.4
GSVIVG01032938001 Vitis vinifera HOM05D003817 ORTHO05D004790 3.5e-75 285.4 214 64.5
Gohir.D04G010300 Gossypium hirsutum HOM05D003817 ORTHO05D004790 4.6e-75 285.0 214 65.0
Gorai.012G012200 Gossypium raimondii HOM05D003817 ORTHO05D004790 4.6e-75 285.0 214 65.0
Potri.014G140900 Populus trichocarpa HOM05D003817 ORTHO05D004790 4.6e-75 285.0 214 64.5
TWI32G0714 Tripterygium wilfordii HOM05D003817 ORTHO05D004790 4.6e-75 285.0 214 64.0
Cc11_g07450 Coffea canephora HOM05D003817 ORTHO05D004790 6.0e-75 284.6 214 65.0
Hund04148 Selenicereus undatus HOM05D003817 ORTHO05D004790 6.0e-75 284.6 214 65.9
Cpa.g.sc70.30 Carica papaya HOM05D003817 ORTHO05D004790 7.9e-75 284.3 214 65.0
Cc07_g01460 Coffea canephora HOM05D003817 ORTHO05D004790 7.9e-75 284.3 214 65.4
Sed0000094 Sechium edule HOM05D003817 ORTHO05D004790 7.9e-75 284.3 214 65.9
Gohir.A05G405300 Gossypium hirsutum HOM05D003817 ORTHO05D004790 1.0e-74 283.9 214 64.5
Prupe.3G315800 Prunus persica HOM05D003817 ORTHO05D004790 1.0e-74 283.9 214 65.4
FvH4_6g54480 Fragaria vesca HOM05D003817 ORTHO05D004790 1.3e-74 283.5 214 65.9
QL02p068081 Quercus lobata HOM05D003817 ORTHO05D004790 1.3e-74 283.5 214 64.5
Manes.11G072000 Manihot esculenta HOM05D003817 ORTHO05D004790 1.8e-74 283.1 214 64.0
Duzib114G0127 Durio zibethinus HOM05D003817 ORTHO05D004790 2.3e-74 282.7 214 64.5
TAR622G0539 Trochodendron aralioides HOM05D003817 ORTHO05D004790 2.3e-74 282.7 214 65.0
Thecc.04G053400 Theobroma cacao HOM05D003817 ORTHO05D004790 3.0e-74 282.3 214 64.5
CsaV3_3G020130 Cucumis sativus L. HOM05D003817 ORTHO05D004790 5.1e-74 281.6 214 65.4
Gohir.A06G180800 Gossypium hirsutum HOM05D003817 ORTHO05D004790 5.1e-74 281.6 214 64.0
Gohir.D06G187600 Gossypium hirsutum HOM05D003817 ORTHO05D004790 5.1e-74 281.6 214 63.6
Solyc07g017860.3 Solanum lycopersicum HOM05D003817 ORTHO05D004790 6.7e-74 281.2 214 65.4
CSS0001904 Camellia sinensis var. sinensis HOM05D003817 ORTHO05D004790 8.7e-74 280.8 214 64.0
CSS0031457 Camellia sinensis var. sinensis HOM05D003817 ORTHO05D004790 8.7e-74 280.8 214 64.0
ClCG05G012410 Citrullus lanatus HOM05D003817 ORTHO05D004790 8.7e-74 280.8 214 65.0
MELO3C014749.2 Cucumis melo HOM05D003817 ORTHO05D004790 8.7e-74 280.8 214 65.0
Glyma.19G107300 Glycine max HOM05D003817 ORTHO05D004790 8.7e-74 280.8 218 63.8
Peaxi162Scf00420g00946 Petunia axillaris HOM05D003817 ORTHO05D004790 8.7e-74 280.8 214 63.6
Sopen07g006650 Solanum pennellii HOM05D003817 ORTHO05D004790 8.7e-74 280.8 214 65.0
arahy.Tifrunner.gnm1.ann1.Q8LDW0 Arachis hypogaea HOM05D003817 ORTHO05D004790 1.1e-73 280.4 237 61.2
Cfa007126 Carpinus fangiana HOM05D003817 ORTHO05D004790 1.1e-73 280.4 214 64.5
PSO478G4644 Papaver somniferum HOM05D003817 ORTHO05D004790 1.5e-73 280.0 214 64.0
SGA_v2.0_scaffold44G16959 Striga asiatica HOM05D003817 ORTHO05D004790 1.5e-73 280.0 214 63.6
Haze_14994 Corylus avellana HOM05D003817 ORTHO05D004790 1.9e-73 279.6 214 64.5
MD09G1000400 Malus domestica HOM05D003817 ORTHO05D004790 1.9e-73 279.6 214 64.0
Peaxi162Scf01054g00026 Petunia axillaris HOM05D003817 ORTHO05D004790 1.9e-73 279.6 214 64.5
PGSC0003DMG400004100 Solanum tuberosum HOM05D003817 ORTHO05D004790 1.9e-73 279.6 214 65.0
Phvul.001G097800 Phaseolus vulgaris HOM05D003817 ORTHO05D004790 2.5e-73 279.3 214 63.6
Sed0021768 Sechium edule HOM05D003817 ORTHO05D004790 2.5e-73 279.3 214 65.4
Oeu035283.1 Olea europaea HOM05D003817 ORTHO05D004790 3.3e-73 278.9 214 63.6
Atru.chr6.2744 Acer truncatum HOM05D003817 ORTHO05D004790 4.3e-73 278.5 214 62.6
PSO017G1153 Papaver somniferum HOM05D003817 ORTHO05D004790 4.3e-73 278.5 214 63.6
Actinidia19535 Actinidia chinensis HOM05D003817 ORTHO05D004790 5.6e-73 278.1 215 63.7
PGR142G3918 Punica granatum HOM05D003817 ORTHO05D004790 5.6e-73 278.1 214 63.1
Gorai.010G219900 Gossypium raimondii HOM05D003817 ORTHO05D004790 7.4e-73 277.7 214 63.1
MD17G1003300 Malus domestica HOM05D003817 ORTHO05D004790 7.4e-73 277.7 214 63.6
TAR374G0877 Trochodendron aralioides HOM05D003817 ORTHO05D004790 7.4e-73 277.7 214 64.5
HanXRQChr07g0197971 Helianthus annuus HOM05D003817 ORTHO05D004790 9.6e-73 277.3 218 64.2
Sabra14G0106200 Salix brachista HOM05D003817 ORTHO05D004790 9.6e-73 277.3 209 64.1
Migut.F00005 Erythranthe guttata HOM05D003817 ORTHO05D004790 1.3e-72 276.9 214 64.5
FAN05G4622 Fragaria x ananassa HOM05D003817 ORTHO05D004790 1.3e-72 276.9 209 65.1
Zm00001eb242380 Zea mays HOM05D003817 ORTHO05D004790 1.3e-72 276.9 214 64.0
Dinv33256 Davidia involucrata HOM05D003817 ORTHO05D004790 1.6e-72 276.6 214 63.1
Glyma.16G044600 Glycine max HOM05D003817 ORTHO05D004790 1.6e-72 276.6 218 62.8
HanXRQChr17g0550861 Helianthus annuus HOM05D003817 ORTHO05D004790 1.6e-72 276.6 218 62.4
Solyc02g094640.4 Solanum lycopersicum HOM05D003817 ORTHO05D004790 1.6e-72 276.6 214 62.6
Sopen02g039280 Solanum pennellii HOM05D003817 ORTHO05D004790 1.6e-72 276.6 214 62.6
PGSC0003DMG400020231 Solanum tuberosum HOM05D003817 ORTHO05D004790 1.6e-72 276.6 214 62.6
Nn3g16184 Nelumbo nucifera HOM05D003817 ORTHO05D004790 2.1e-72 276.2 214 63.1
TPR.G20658 Trifolium pratense HOM05D003817 ORTHO05D004790 2.1e-72 276.2 218 62.8
Lj7C620T2 Lonicera japonica HOM05D003817 ORTHO05D004790 2.8e-72 275.8 205 65.4
VMungo1383G3364 Vigna mungo HOM05D003817 ORTHO05D004790 2.8e-72 275.8 214 63.1
MSTRG.3032 Avicennia marina HOM05D003817 ORTHO05D004790 3.7e-72 275.4 218 61.9
FAN14G2381 Fragaria x ananassa HOM05D003817 ORTHO05D004790 6.2e-72 274.6 209 65.1
Lj1g0025699 Lotus japonicus HOM05D003817 ORTHO05D004790 8.1e-72 274.2 214 63.1
Lsat_1_v5_gn_3_105260 Lactuca sativa HOM05D003817 ORTHO05D004790 1.4e-71 273.5 209 63.2
Lalb_Chr14g0364211 Lupinus albus HOM05D003817 ORTHO05D004790 1.4e-71 273.5 214 62.1
DCAR_014314 Daucus carota HOM05D003817 ORTHO05D004790 1.8e-71 273.1 214 62.6
FAN09G3990 Fragaria x ananassa HOM05D003817 ORTHO05D004790 1.8e-71 273.1 209 64.6
COL.COLO4_13414 Corchorus olitorius HOM05D003817 ORTHO05D004790 2.4e-71 272.7 223 60.5
Thhalv10027656m.g Eutrema salsugineum HOM05D003817 ORTHO05D004790 3.1e-71 272.3 214 61.2
Os02g0525900 Oryza sativa ssp. japonica HOM05D003817 ORTHO05D004790 3.1e-71 272.3 214 63.1
ATR0582G187 Amborella trichopoda HOM05D003817 ORTHO05D004790 4.0e-71 271.9 214 60.7
Psat3g091520 Pisum sativum HOM05D003817 ORTHO05D004790 4.0e-71 271.9 218 61.9
Carub.0007s3210 Capsella rubella HOM05D003817 ORTHO05D004790 5.3e-71 271.6 214 60.7
Ciclev10014353m.g Citrus clementina HOM05D003817 ORTHO05D004790 6.9e-71 271.2 214 62.6
Nn4g22048 Nelumbo nucifera HOM05D003817 ORTHO05D004790 6.9e-71 271.2 214 61.2
Lalb_Chr22g0359421 Lupinus albus HOM05D003817 ORTHO05D004790 9.0e-71 270.8 214 63.1
Sp7g05640 Schrenkiella parvula HOM05D003817 ORTHO05D004790 9.0e-71 270.8 214 61.7
MBI07_g24942_MAGBIO Magnolia biondii HOM05D003817 ORTHO05D004790 1.2e-70 270.4 209 63.2
Medtr7g084850 Medicago truncatula HOM05D003817 ORTHO05D004790 1.2e-70 270.4 218 61.9
A04p16290 Brassica napus HOM05D003817 ORTHO05D004790 1.5e-70 270.0 214 61.2
MSTRG.24123 Avicennia marina HOM05D003817 ORTHO05D004790 2.0e-70 269.6 214 62.1
ECA246G1064 Erigeron canadensis HOM05D003817 ORTHO05D004790 2.6e-70 269.2 214 61.7
Os04g0404800 Oryza sativa ssp. japonica HOM05D003817 ORTHO05D004790 2.6e-70 269.2 214 60.7
THA.LOC104809016 Tarenaya hassleriana HOM05D003817 ORTHO05D004790 2.6e-70 269.2 214 62.1
CAN.G473.168 Capsicum annuum HOM05D003817 ORTHO05D004790 3.4e-70 268.9 209 62.2
Aa31LG3G590 Aethionema arabicum HOM05D003817 ORTHO05D004790 4.5e-70 268.5 214 59.8
AL7G45460 Arabidopsis lyrata HOM05D003817 ORTHO05D004790 4.5e-70 268.5 214 60.3
TAR371G0004 Trochodendron aralioides HOM05D003817 ORTHO05D004790 4.5e-70 268.5 214 62.1
BcaC02g08777 Brassica carinata HOM05D003817 ORTHO05D004790 5.8e-70 268.1 214 60.7
C04p50770 Brassica napus HOM05D003817 ORTHO05D004790 5.8e-70 268.1 214 60.7
CDE05G3017 Ceratophyllum demersum HOM05D003817 ORTHO05D004790 5.8e-70 268.1 214 61.7
THA.LOC104809015 Tarenaya hassleriana HOM05D003817 ORTHO05D004790 5.8e-70 268.1 214 62.6
THA.LOC104815254 Tarenaya hassleriana HOM05D003817 ORTHO05D004790 5.8e-70 268.1 214 61.7
BcaB04g18331 Brassica carinata HOM05D003817 ORTHO05D004790 7.6e-70 267.7 214 60.3
BraA04t17268Z Brassica rapa HOM05D003817 ORTHO05D004790 7.6e-70 267.7 214 60.7
CDE02G2343 Ceratophyllum demersum HOM05D003817 ORTHO05D004790 7.6e-70 267.7 214 61.2
Hma1.2p1_0421F.1_g149840 Hydrangea macrophylla HOM05D003817 ORTHO05D004790 7.6e-70 267.7 214 61.2
SalBow4G1463 Salvia bowleyana HOM05D003817 ORTHO05D004790 7.6e-70 267.7 213 61.0
BolC4t26673H Brassica oleracea HOM05D003817 ORTHO05D004790 1.0e-69 267.3 214 61.2
Ca_08241_v3 Cicer arietinum L. HOM05D003817 ORTHO05D004790 1.3e-69 266.9 218 61.0
unitig_736.g22469 Utricularia gibba HOM05D003817 ORTHO05D004790 1.3e-69 266.9 214 61.2
ECA238G4746 Erigeron canadensis HOM05D003817 ORTHO05D004790 1.7e-69 266.5 218 61.0
AT5G36880 Arabidopsis thaliana HOM05D003817 ORTHO05D004790 2.2e-69 266.2 214 59.8
CARHR216250 Cardamine hirsuta HOM05D003817 ORTHO05D004790 3.8e-69 265.4 214 60.3
SEGI_29007 Sequoiadendron giganteum HOM05D003817 ORTHO05D004790 3.8e-69 265.4 214 59.8
Manes.04G095900 Manihot esculenta HOM05D003817 ORTHO05D004790 4.9e-69 265.0 214 62.1
CDE06G2431 Ceratophyllum demersum HOM05D003817 ORTHO05D004790 1.1e-68 263.8 214 60.7
BcaB06g27038 Brassica carinata HOM05D003817 ORTHO05D004790 3.2e-68 262.3 214 59.3
Lsat_1_v5_gn_2_95161 Lactuca sativa HOM05D003817 ORTHO05D004790 3.2e-68 262.3 209 61.2
HanXRQChr07g0197951 Helianthus annuus HOM05D003817 ORTHO05D004790 9.3e-68 260.8 225 59.6
Ah.02g128710 Amaranthus hybridus HOM05D003817 ORTHO05D004790 1.6e-67 260.0 214 62.1
Ah.03g136510 Amaranthus hybridus HOM05D003817 ORTHO05D004790 1.6e-67 260.0 214 61.2
Nitab4.5_0009445g0010 Nicotiana tabacum HOM05D003817 ORTHO05D004790 1.6e-67 260.0 233 56.7
Nitab4.5_0002901g0010 Nicotiana tabacum HOM05D003817 ORTHO05D004790 2.1e-67 259.6 233 56.7
HPP92_023104 Vanilla planifolia HOM05D003817 ORTHO05D004790 1.5e-65 253.4 214 59.3
DCAR_000960 Daucus carota HOM05D003817 ORTHO05D004790 1.6e-64 250.0 237 53.2
Sed0016846 Sechium edule HOM05D003817 ORTHO05D004790 1.6e-64 250.0 214 57.9
AagrBONN_evm.TU.Sc2ySwM_368.2817 Anthoceros agrestis HOM05D003817 ORTHO05D004790 1.1e-63 247.3 213 57.7
CsaV3_5G021900 Cucumis sativus L. HOM05D003817 ORTHO05D004790 1.4e-63 246.9 214 56.5
Pp3c1_12020 Physcomitrium patens HOM05D003817 ORTHO05D004790 3.1e-63 245.7 214 56.5
ClCG01G007930 Citrullus lanatus HOM05D003817 ORTHO05D004790 4.1e-63 245.4 214 57.0
SMO361G0284 Selaginella moellendorffii HOM05D003817 ORTHO05D004790 4.5e-62 241.9 215 56.3
Pp3c11_11320 Physcomitrium patens HOM05D003817 ORTHO05D004790 7.6e-62 241.1 218 55.5
MELO3C005081.2 Cucumis melo HOM05D003817 ORTHO05D004790 2.9e-61 239.2 215 55.8
Mapoly0041s0059 Marchantia polymorpha HOM05D003817 ORTHO05D004790 2.9e-61 239.2 214 54.2
HPP92_008234 Vanilla planifolia HOM05D003817 ORTHO05D004790 2.9e-61 239.2 214 57.0
Rhsim08G0037000 Rhododendron simsii HOM05D003817 ORTHO05D004790 4.6e-59 231.9 171 64.9
Nitab4.5_0006606g0020 Nicotiana tabacum HOM05D003817 ORTHO05D004790 3.9e-58 228.8 159 68.6
CBR_g19652 Chara braunii HOM05D003817 ORTHO05D004790 5.1e-58 228.4 212 53.3
TAR371G0495 Trochodendron aralioides HOM05D003817 ORTHO05D004790 3.3e-57 225.7 142 72.5
vmacro22108 Vaccinium macrocarpon HOM05D003817 ORTHO05D004790 7.4e-57 224.6 189 60.3
vmacro22928 Vaccinium macrocarpon HOM05D003817 ORTHO05D004790 7.4e-57 224.6 189 60.3
Lj1g0018654 Lotus japonicus HOM05D003817 ORTHO05D004790 2.2e-56 223.0 185 60.5
CBR_g32518 Chara braunii HOM05D003817 ORTHO05D004790 1.3e-53 213.8 200 52.0
Pp3c20_22210 Physcomitrium patens HOM05D003817 ORTHO05D004790 9.4e-52 207.6 213 48.8
PRCOL_00003027 Prasinoderma coloniale HOM05D003817 ORTHO05D004790 9.4e-52 207.6 217 47.9
Zm00001eb084450 Zea mays HOM05D003817 ORTHO05D004790 2.1e-51 206.5 126 75.4
PRCOL_00001628 Prasinoderma coloniale HOM05D003817 ORTHO05D004790 2.3e-50 203.0 218 47.2
SMO137G0374 Selaginella moellendorffii HOM05D003817 ORTHO05D004790 3.9e-50 202.2 212 47.2
MCO06G185 Micromonas commoda HOM05D003817 ORTHO05D004790 8.2e-48 194.5 208 46.6
Cre01.g055408 Chlamydomonas reinhardtii HOM05D003817 ORTHO05D004790 1.1e-47 194.1 214 46.3
Mapoly0024s0068 Marchantia polymorpha HOM05D003817 ORTHO05D004790 4.1e-47 192.2 213 46.0
Cre01.g071662 Chlamydomonas reinhardtii HOM05D003817 ORTHO05D004790 2.9e-45 186.0 212 47.2
Nitab4.5_0000055g0220 Nicotiana tabacum HOM05D003817 ORTHO05D004790 1.1e-44 184.1 120 71.7
Haze_26668 Corylus avellana HOM05D003817 ORTHO05D004790 5.1e-42 175.3 135 58.5
Haze_26545 Corylus avellana HOM05D003817 ORTHO05D004790 2.6e-41 172.9 209 41.1
Cre07.g353450 Chlamydomonas reinhardtii HOM05D003817 ORTHO05D004790 1.3e-40 170.6 214 42.5
Cfa025265 Carpinus fangiana HOM05D003817 ORTHO05D004790 1.9e-36 156.8 205 41.5
Duzib128G1600 Durio zibethinus HOM05D003817 ORTHO05D004790 4.0e-34 149.1 214 41.6
Cfa025252 Carpinus fangiana HOM05D003817 ORTHO05D122603 2.0e-22 110.2 171 35.1
TAR636G0195 Trochodendron aralioides HOM05D000402 ORTHO05D000263 9.4e-20 101.3 59 69.5
Lsat_1_v5_gn_4_97721 Lactuca sativa HOM05D003817 ORTHO05D229299 5.4e-15 85.5 73 53.4
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 1.1e-07 61.2 70 52.9


User provided reference genes

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