Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01693 Beta vulgaris HOM05D007703 ORTHO05D009731 7.7e-36 153.3 78 100.0
AUR62022343 Chenopodium quinoa HOM05D007703 ORTHO05D009731 8.6e-19 96.7 70 70.0
AUR62034365 Chenopodium quinoa HOM05D007703 ORTHO05D009731 3.3e-18 94.7 70 68.6
Duzib116G0261 Durio zibethinus HOM05D007703 ORTHO05D009731 2.8e-17 91.7 69 66.7
Potri.005G167200 Populus trichocarpa HOM05D007703 ORTHO05D009731 4.0e-16 87.8 67 64.2
Hund26653 Selenicereus undatus HOM05D007703 ORTHO05D009731 5.2e-16 87.4 76 59.2
Thecc.08G112500 Theobroma cacao HOM05D007703 ORTHO05D009731 5.2e-16 87.4 69 63.8
Gohir.D06G040000 Gossypium hirsutum HOM05D007703 ORTHO05D009731 6.8e-16 87.0 70 61.4
Gorai.010G044500 Gossypium raimondii HOM05D007703 ORTHO05D009731 6.8e-16 87.0 70 61.4
Aa31LG7G6100 Aethionema arabicum HOM05D007703 ORTHO05D009731 8.9e-16 86.7 70 62.9
CiPaw.05G232600 Carya illinoinensis HOM05D007703 ORTHO05D009731 8.9e-16 86.7 67 64.2
Sabra05G0127000 Salix brachista HOM05D007703 ORTHO05D009731 8.9e-16 86.7 68 60.3
TWI56G0976 Tripterygium wilfordii HOM05D007703 ORTHO05D009731 1.2e-15 86.3 70 64.3
Eucgr.F00482 Eucalyptus grandis HOM05D007703 ORTHO05D009731 2.0e-15 85.5 68 60.3
Gohir.A06G038300 Gossypium hirsutum HOM05D007703 ORTHO05D009731 2.0e-15 85.5 70 61.4
QL12p035855 Quercus lobata HOM05D007703 ORTHO05D009731 2.0e-15 85.5 72 63.9
Manes.02G156200 Manihot esculenta HOM05D007703 ORTHO05D009731 2.6e-15 85.1 73 61.6
COL.COLO4_16476 Corchorus olitorius HOM05D007703 ORTHO05D009731 3.4e-15 84.7 69 60.9
Nitab4.5_0002566g0010 Nicotiana tabacum HOM05D007703 ORTHO05D009731 3.4e-15 84.7 71 64.8
Sopen12g029570 Solanum pennellii HOM05D007703 ORTHO05D009731 3.4e-15 84.7 51 78.4
Atru.chr13.1271 Acer truncatum HOM05D007703 ORTHO05D009731 4.4e-15 84.3 70 60.0
CANSAT25G3270 Cannabis sativa HOM05D007703 ORTHO05D009731 4.4e-15 84.3 76 56.6
Nitab4.5_0000425g0040 Nicotiana tabacum HOM05D007703 ORTHO05D009731 4.4e-15 84.3 72 63.9
PGR042G2694 Punica granatum HOM05D007703 ORTHO05D009731 5.7e-15 84.0 68 63.2
GSVIVG01008983001 Vitis vinifera HOM05D007703 ORTHO05D009731 5.7e-15 84.0 71 60.6
Nn1g05271 Nelumbo nucifera HOM05D007703 ORTHO05D009731 9.8e-15 83.2 72 56.9
MELO3C022803.2 Cucumis melo HOM05D007703 ORTHO05D009731 1.3e-14 82.8 65 61.5
Sc20g0003040 Simmondsia chinensis HOM05D007703 ORTHO05D009731 1.3e-14 82.8 71 62.0
Solyc12g056910.2 Solanum lycopersicum HOM05D007703 ORTHO05D009731 1.7e-14 82.4 51 76.5
Hma1.2p1_0120F.1_g057000 Hydrangea macrophylla HOM05D007703 ORTHO05D009731 2.2e-14 82.0 50 76.0
PGSC0003DMG400008548 Solanum tuberosum HOM05D007703 ORTHO05D009731 2.2e-14 82.0 71 60.6
MSTRG.24946 Avicennia marina HOM05D007703 ORTHO05D009731 2.9e-14 81.6 74 58.1
Medtr5g061840 Medicago truncatula HOM05D007703 ORTHO05D009731 3.7e-14 81.3 68 60.3
Prupe.1G511400 Prunus persica HOM05D007703 ORTHO05D009731 3.7e-14 81.3 69 59.4
Sed0012287 Sechium edule HOM05D007703 ORTHO05D009731 3.7e-14 81.3 65 60.0
Ciclev10003047m.g Citrus clementina HOM05D007703 ORTHO05D009731 4.9e-14 80.9 68 57.4
Glyma.13G087000 Glycine max HOM05D007703 ORTHO05D009731 6.3e-14 80.5 71 59.2
arahy.Tifrunner.gnm1.ann1.DJB4SG Arachis hypogaea HOM05D007703 ORTHO05D009731 8.3e-14 80.1 67 58.2
CsaV3_5G023730 Cucumis sativus L. HOM05D007703 ORTHO05D009731 8.3e-14 80.1 74 56.8
HPP92_019111 Vanilla planifolia HOM05D007703 ORTHO05D009731 8.3e-14 80.1 52 71.2
Aqoxy6G00561 Aquilegia oxysepala HOM05D007703 ORTHO05D009731 1.8e-13 79.0 71 57.7
Thhalv10009245m.g Eutrema salsugineum HOM05D007703 ORTHO05D009731 1.8e-13 79.0 70 55.7
Psat0s3920g0040 Pisum sativum HOM05D007703 ORTHO05D009731 1.8e-13 79.0 74 59.5
Ca_05260_v3 Cicer arietinum L. HOM05D007703 ORTHO05D009731 2.4e-13 78.6 73 58.9
arahy.Tifrunner.gnm1.ann1.0YA8SQ Arachis hypogaea HOM05D007703 ORTHO05D009731 3.2e-13 78.2 67 56.7
RcHm_v2.0_Chr7g0240051 Rosa chinensis HOM05D007703 ORTHO05D009731 3.2e-13 78.2 69 59.4
Sed0022194 Sechium edule HOM05D007703 ORTHO05D009731 3.2e-13 78.2 69 55.1
Carub.0001s2169 Capsella rubella HOM05D007703 ORTHO05D009731 4.1e-13 77.8 63 60.3
Lsat_1_v5_gn_9_44720 Lactuca sativa HOM05D007703 ORTHO05D009731 4.1e-13 77.8 74 52.7
TPR.G1060 Trifolium pratense HOM05D007703 ORTHO05D009731 4.1e-13 77.8 66 60.6
ECA232G3100 Erigeron canadensis HOM05D007703 ORTHO05D009731 5.4e-13 77.4 65 55.4
FvH4_5g38090 Fragaria vesca HOM05D007703 ORTHO05D009731 5.4e-13 77.4 70 55.7
FAN13G1213 Fragaria x ananassa HOM05D007703 ORTHO05D009731 5.4e-13 77.4 70 55.7
Glyma.14G169200 Glycine max HOM05D007703 ORTHO05D009731 5.4e-13 77.4 71 56.3
Peaxi162Scf00160g01521 Petunia axillaris HOM05D007703 ORTHO05D009731 5.4e-13 77.4 70 62.9
Sp1g19640 Schrenkiella parvula HOM05D007703 ORTHO05D009731 5.4e-13 77.4 70 57.1
BcaC05g26138 Brassica carinata HOM05D007703 ORTHO05D009731 7.0e-13 77.0 70 57.1
C05p21240 Brassica napus HOM05D007703 ORTHO05D009731 7.0e-13 77.0 70 57.1
BolC5t30820H Brassica oleracea HOM05D007703 ORTHO05D009731 7.0e-13 77.0 70 57.1
Phvul.008G170600 Phaseolus vulgaris HOM05D007703 ORTHO05D009731 7.0e-13 77.0 70 58.6
CAN.G144.17 Capsicum annuum HOM05D007703 ORTHO05D009731 9.2e-13 76.6 48 77.1
Cpa.g.sc66.97 Carica papaya HOM05D007703 ORTHO05D009731 9.2e-13 76.6 70 55.7
HanXRQChr05g0144121 Helianthus annuus HOM05D007703 ORTHO05D009731 9.2e-13 76.6 51 66.7
vmacro21226 Vaccinium macrocarpon HOM05D007703 ORTHO05D009731 9.2e-13 76.6 69 58.0
Cc10_g05880 Coffea canephora HOM05D007703 ORTHO05D009731 1.2e-12 76.3 74 59.5
FAN04G3187 Fragaria x ananassa HOM05D007703 ORTHO05D009731 1.2e-12 76.3 69 56.5
CARHR022490 Cardamine hirsuta HOM05D007703 ORTHO05D009731 1.6e-12 75.9 72 56.9
Lalb_Chr04g0253231 Lupinus albus HOM05D007703 ORTHO05D009731 2.0e-12 75.5 66 57.6
A09p42620 Brassica napus HOM05D007703 ORTHO05D009731 2.7e-12 75.1 71 52.1
Lj1g0023708 Lotus japonicus HOM05D007703 ORTHO05D009731 2.7e-12 75.1 66 57.6
SalBow7G3803 Salvia bowleyana HOM05D007703 ORTHO05D009731 2.7e-12 75.1 65 56.9
BraA09t39737Z Brassica rapa HOM05D007703 ORTHO05D009731 3.5e-12 74.7 71 52.1
Zm00001eb018670 Zea mays HOM05D007703 ORTHO05D009731 3.5e-12 74.7 60 55.0
BcaB07g32233 Brassica carinata HOM05D007703 ORTHO05D009731 4.6e-12 74.3 71 54.9
TAR628G1160 Trochodendron aralioides HOM05D007703 ORTHO05D009731 4.6e-12 74.3 64 59.4
AL1G35580 Arabidopsis lyrata HOM05D007703 ORTHO05D009731 1.7e-11 72.4 68 52.9
AT1G22140 Arabidopsis thaliana HOM05D007703 ORTHO05D009731 1.7e-11 72.4 68 54.4
Os03g0385301 Oryza sativa ssp. japonica HOM05D007703 ORTHO05D009731 1.7e-11 72.4 75 49.3
PSO133G0107 Papaver somniferum HOM05D007703 ORTHO05D009731 1.1e-10 69.7 51 64.7
RcHm_v2.0_Chr2g0097791 Rosa chinensis HOM05D007703 ORTHO05D009731 1.5e-10 69.3 48 66.7
Ah.05g168540 Amaranthus hybridus HOM05D007703 ORTHO05D009731 1.9e-10 68.9 39 82.1
ATR0564G384 Amborella trichopoda HOM05D007703 ORTHO05D009731 1.9e-10 68.9 56 58.9
Mapoly0023s0123 Marchantia polymorpha HOM05D007703 ORTHO05D009731 1.9e-10 68.9 53 60.4
CDE10G0679 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 7.3e-10 67.0 67 52.2
Haze_00567 Corylus avellana HOM05D007703 ORTHO05D009731 3.6e-09 64.7 115 40.0
Pp3c13_8980 Physcomitrium patens HOM05D007703 ORTHO05D009731 6.2e-09 63.9 48 60.4
ClCG03G008950 Citrullus lanatus HOM05D007703 ORTHO05D009731 8.0e-09 63.5 107 37.4
SEGI_17524 Sequoiadendron giganteum HOM05D007703 ORTHO05D009731 1.0e-08 63.2 64 51.6
SGA_v2.0_scaffold48G18018 Striga asiatica HOM05D007703 ORTHO05D009731 1.2e-07 59.7 65 47.7
CSS0046153 Camellia sinensis var. sinensis HOM05D007703 ORTHO05D009731 4.4e-07 57.8 36 75.0
MBI02_g20368_MAGBIO Magnolia biondii HOM05D007703 ORTHO05D009731 2.9e-06 55.1 37 70.3


User provided reference genes

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