Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1972.2 975 100.0
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 0.0e+00 1438.7 988 75.3
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 0.0e+00 1411.4 972 75.5
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1219.9 971 64.4
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 0.0e+00 1216.1 1200 57.0
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1215.7 964 64.2
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1207.2 950 64.4
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1204.9 989 62.9
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1200.7 952 65.9
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1200.3 963 63.4
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1196.4 981 63.4
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1192.6 962 63.4
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1181.8 970 63.2
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1174.8 946 63.3
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 0.0e+00 1170.6 942 67.0
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1166.8 960 63.3
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1164.4 973 62.6
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1164.1 972 63.5
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1162.9 1010 60.7
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1161.7 990 61.9
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1161.4 930 65.1
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1159.8 960 62.3
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1158.7 971 62.3
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1157.9 970 62.5
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1157.5 953 63.9
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1156.7 956 62.4
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1156.4 953 63.5
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1155.6 967 62.6
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1155.2 953 63.3
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1153.7 950 63.1
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1153.3 952 61.6
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1151.3 954 62.9
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1149.0 949 61.6
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1147.9 940 63.7
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1146.0 955 62.0
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1142.1 944 62.2
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1141.7 973 62.3
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1141.7 970 62.5
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1140.9 937 63.0
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1139.8 988 60.7
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1136.7 946 62.7
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1135.9 975 61.0
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1134.8 945 62.5
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1133.2 930 63.8
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1131.3 938 62.9
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1130.9 1002 60.3
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1130.2 960 61.1
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1128.6 940 62.2
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1126.7 995 60.5
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1125.2 947 62.3
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1123.6 1021 59.7
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1120.9 950 61.4
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1118.6 1021 59.6
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1117.1 1021 59.5
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1115.1 949 61.3
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1114.8 936 62.3
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1114.4 942 62.1
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1113.6 958 59.4
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1112.1 980 60.5
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1112.1 1009 58.9
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1110.9 947 60.6
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1109.4 941 61.2
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1102.8 1033 56.7
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1102.8 982 60.0
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1099.0 955 60.8
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1097.0 931 62.6
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 0.0e+00 1096.6 985 59.2
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1096.6 948 61.5
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1094.7 965 59.7
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1093.6 970 59.9
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1092.8 995 58.9
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1091.6 971 59.4
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1089.3 962 58.9
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1088.6 962 59.6
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1087.8 964 59.2
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1085.5 825 67.9
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1084.7 953 60.0
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1081.6 952 59.5
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1080.1 924 62.3
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1078.9 978 57.8
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 0.0e+00 1078.2 1056 55.0
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1077.0 967 59.3
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1077.0 953 58.9
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1075.8 963 57.8
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 6.7e-312 1074.7 956 58.8
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 2.7e-311 1072.0 960 59.6
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 2.7e-311 1072.0 960 59.6
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 1.7e-310 1069.3 1052 56.6
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 3.6e-308 1061.6 970 57.9
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 8.1e-308 1060.4 947 58.3
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 8.1e-308 1060.4 903 62.8
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 2.3e-307 1058.9 887 61.9
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 4.0e-307 1058.1 945 59.9
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 4.0e-307 1058.1 970 58.0
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 5.2e-307 1057.7 970 57.7
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 2.0e-306 1055.8 1021 56.0
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 1.3e-305 1053.1 951 58.8
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 9.2e-304 1047.0 949 59.6
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 1.9e-301 1039.3 948 57.4
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 1.9e-301 1039.3 948 57.4
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 1.2e-300 1036.6 880 60.9
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 1.2e-300 1036.6 947 58.0
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 4.7e-300 1034.6 958 58.4
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 6.8e-299 1030.8 1066 53.8
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 5.8e-298 1027.7 944 57.6
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 1.9e-296 1022.7 960 58.0
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 1.9e-296 1022.7 965 56.8
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 7.8e-295 1017.3 877 60.4
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 2.1e-292 1009.2 919 59.3
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 2.6e-290 1002.3 949 56.9
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 3.4e-290 1001.9 1046 53.3
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 2.2e-289 999.2 827 62.9
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 3.8e-257 892.1 803 59.4
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 1.9e-256 889.8 990 51.4
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 2.0e-250 869.8 919 50.9
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 6.3e-244 848.2 1087 44.3
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 9.1e-243 844.3 869 51.3
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 1.0e-241 840.9 879 50.7
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 7.2e-240 834.7 726 62.4
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 3.3e-237 825.9 795 55.2
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 5.2e-214 748.8 740 55.4
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 4.0e-198 696.0 683 55.5
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 3.9e-193 679.5 421 77.4
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 1.2e-189 667.9 646 57.0
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 8.3e-188 661.8 656 54.3
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 7.8e-178 628.6 777 47.4
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.6e-162 577.8 429 69.0
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.3e-161 574.7 395 73.4
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 2.1e-154 550.8 387 70.8
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 1.3e-132 478.4 482 54.8
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 1.2e-125 455.3 290 75.2
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.2e-122 445.3 323 69.0
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 1.6e-122 444.9 610 44.6
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.1e-122 444.5 733 40.1
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 2.0e-120 438.0 289 70.6
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 3.3e-120 437.2 568 46.1
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.7e-106 391.0 350 56.3
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 1.8e-102 378.3 325 58.2
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 2.9e-100 370.9 327 57.5
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 5.2e-89 333.6 214 74.3
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 2.4e-54 218.4 150 72.0
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.1e-52 210.7 139 71.9
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 4.9e-47 194.1 213 49.8
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 1.2e-45 189.5 108 81.5
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 1.0e-36 159.8 132 59.1
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 6.5e-31 140.6 125 59.2
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.4e-30 139.4 163 50.3
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 9.3e-30 136.7 76 82.9
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.1e-27 129.8 306 36.3
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 2.4e-25 122.1 112 55.4
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.0e-24 119.0 87 63.2
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 3.1e-17 95.1 66 72.7
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 1.9e-14 85.9 160 35.6
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 3.2e-14 85.1 268 29.5
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 1.6e-13 82.8 52 73.1
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 3.6e-13 81.6 89 51.7
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 3.9e-12 78.2 45 82.2
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 6.7e-12 77.4 134 34.3
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.3e-10 73.2 50 66.0
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 6.3e-10 70.9 68 51.5
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.0e-08 65.9 62 54.8
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 3.8e-07 61.6 53 54.7
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 3.8e-07 61.6 53 54.7
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 5.0e-07 61.2 53 54.7
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 6.5e-07 60.8 33 72.7
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.1e-06 60.1 52 59.6
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 5.5e-06 57.8 147 32.7


User provided reference genes

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