Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 9.5e-139 496.9 260 100.0
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 8.2e-66 254.6 277 54.9
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 3.8e-63 245.7 291 55.3
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 1.8e-36 157.1 295 36.3
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 3.0e-36 156.4 288 38.5
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 4.4e-35 152.5 160 50.6
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 8.3e-34 148.3 244 41.0
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 8.3e-34 148.3 275 41.8
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 5.4e-33 145.6 227 41.9
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 5.4e-33 145.6 215 46.0
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 3.5e-32 142.9 241 41.5
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 1.0e-31 141.4 152 53.3
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 2.3e-31 140.2 242 39.3
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 2.3e-31 140.2 179 49.7
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 2.9e-31 139.8 331 34.1
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 8.6e-31 138.3 204 45.1
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 1.5e-30 137.5 203 45.3
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 2.5e-30 136.7 220 42.3
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 2.5e-30 136.7 218 42.7
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 2.5e-30 136.7 233 41.2
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 5.5e-30 135.6 234 42.3
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 9.5e-30 134.8 240 40.4
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 1.2e-29 134.4 152 50.0
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 1.6e-29 134.0 156 50.6
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 3.6e-29 132.9 229 41.9
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 6.1e-29 132.1 264 39.4
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 6.1e-29 132.1 298 33.6
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 1.0e-28 131.3 291 36.8
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.0e-28 131.3 223 37.7
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 1.8e-28 130.6 278 37.1
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 2.3e-28 130.2 275 36.7
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 4.0e-28 129.4 242 38.8
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 4.0e-28 129.4 183 45.9
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 5.2e-28 129.0 153 48.4
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 5.2e-28 129.0 206 44.2
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 8.9e-28 128.3 164 42.1
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 1.2e-27 127.9 264 38.3
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 1.2e-27 127.9 295 32.2
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.2e-27 127.9 223 37.2
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 1.5e-27 127.5 228 40.8
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 1.5e-27 127.5 177 46.9
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 1.5e-27 127.5 152 49.3
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 2.0e-27 127.1 147 47.6
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 2.6e-27 126.7 264 35.2
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 3.4e-27 126.3 261 37.5
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 3.4e-27 126.3 152 46.1
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 3.4e-27 126.3 153 45.8
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 4.4e-27 125.9 152 48.7
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 9.8e-27 124.8 162 43.8
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 9.8e-27 124.8 153 46.4
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 9.8e-27 124.8 201 43.8
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 9.8e-27 124.8 172 44.8
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 1.7e-26 124.0 236 39.8
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 2.2e-26 123.6 315 32.7
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 2.2e-26 123.6 272 33.8
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 2.2e-26 123.6 205 41.0
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.8e-26 123.2 223 36.3
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 2.8e-26 123.2 206 41.3
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 2.8e-26 123.2 201 42.3
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 4.9e-26 122.5 139 47.5
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 4.9e-26 122.5 223 39.0
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 6.3e-26 122.1 227 41.4
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.4e-25 120.9 255 35.7
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 1.4e-25 120.9 214 40.7
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 1.8e-25 120.6 256 37.1
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 1.8e-25 120.6 262 34.7
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 1.8e-25 120.6 205 43.9
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 1.8e-25 120.6 219 38.8
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 1.8e-25 120.6 207 39.6
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 2.4e-25 120.2 242 36.4
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 2.4e-25 120.2 209 40.7
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 2.4e-25 120.2 302 34.4
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 7.0e-25 118.6 247 36.0
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 9.2e-25 118.2 235 40.0
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.2e-24 117.9 222 38.7
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 3.5e-24 116.3 148 43.2
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 3.5e-24 116.3 221 37.6
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 4.5e-24 115.9 240 39.6
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 4.5e-24 115.9 148 43.2
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 4.5e-24 115.9 216 39.8
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 7.8e-24 115.2 265 35.1
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.3e-23 114.4 216 39.8
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 1.3e-23 114.4 182 42.9
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 2.3e-23 113.6 239 36.0
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 2.3e-23 113.6 223 35.9
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 2.3e-23 113.6 220 38.6
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 2.9e-23 113.2 140 42.9
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 2.9e-23 113.2 140 42.9
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 2.9e-23 113.2 261 34.9
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 3.8e-23 112.8 192 38.5
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 3.8e-23 112.8 233 38.2
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 6.6e-23 112.1 154 44.2
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 8.6e-23 111.7 158 41.8
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 8.6e-23 111.7 264 34.1
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 1.9e-22 110.5 185 44.3
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 2.5e-22 110.2 249 36.9
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 4.3e-22 109.4 229 36.2
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 5.6e-22 109.0 261 34.1
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 1.2e-21 107.8 249 36.1
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 6.1e-21 105.5 265 34.0
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 8.0e-21 105.1 312 29.8
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 1.4e-20 104.4 265 35.1
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 3.0e-20 103.2 212 39.2
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 6.8e-20 102.1 151 40.4
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 6.8e-20 102.1 96 56.2
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 1.3e-18 97.8 278 30.6
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 1.3e-18 97.8 167 36.5
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 1.7e-18 97.4 288 30.9
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 6.4e-18 95.5 152 38.8
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 6.4e-18 95.5 249 32.5
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 8.3e-18 95.1 178 40.4
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 2.4e-17 93.6 206 36.9
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 4.6e-16 89.4 139 41.0
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 6.0e-16 89.0 161 37.9
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 1.7e-15 87.4 127 41.7
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 3.0e-15 86.7 171 36.3
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 1.9e-14 84.0 262 28.2
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 1.4e-12 77.8 107 45.8
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 1.8e-12 77.4 186 35.5
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 2.3e-12 77.0 218 31.7
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 5.8e-11 72.4 266 25.6
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 9.8e-11 71.6 268 27.6
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 2.2e-10 70.5 238 28.6
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 2.2e-10 70.5 264 26.5
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 2.1e-08 63.9 84 42.9
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 3.5e-08 63.2 142 33.1
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 6.0e-08 62.4 104 42.3
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 1.0e-07 61.6 72 44.4
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 3.0e-07 60.1 91 40.7
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 3.0e-07 60.1 170 31.2
Nn1g06075 Nelumbo nucifera HOM05D005242 ORTHO05D006778 3.3e-06 56.6 53 52.8


User provided reference genes

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