Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01517 Beta vulgaris HOM05D014031 ORTHO05D000022 6.9e-113 410.6 201 100.0
EL10Ac2g03536 Beta vulgaris HOM05D014031 ORTHO05D000022 9.8e-51 204.1 175 61.7
EL10Ac2g03336 Beta vulgaris HOM05D014031 ORTHO05D000022 1.7e-42 176.8 162 58.6
EL10Ac4g09006 Beta vulgaris HOM05D014031 ORTHO05D000022 2.6e-35 152.9 190 49.5
EL10Ac6g13741 Beta vulgaris HOM05D008685 ORTHO05D000022 2.4e-28 129.8 232 31.5
EL10Ac9g22480 Beta vulgaris HOM05D014031 ORTHO05D000022 5.2e-28 128.6 206 35.9
EL10Ac1g01539 Beta vulgaris HOM05D014031 ORTHO05D000022 1.2e-27 127.5 72 84.7
AUR62014861 Chenopodium quinoa HOM05D000003 ORTHO05D000004 2.1e-24 116.7 216 34.7
EL10Ac3g06470 Beta vulgaris HOM05D013686 ORTHO05D000022 2.3e-23 113.2 116 56.9
EL10Ac1g02112 Beta vulgaris HOM05D000003 ORTHO05D000006 6.6e-23 111.7 218 31.7
EL10Ac7g16709 Beta vulgaris HOM05D000003 ORTHO05D000004 6.6e-23 111.7 215 29.8
EL10Ac5g11568 Beta vulgaris HOM05D014031 ORTHO05D000022 3.3e-22 109.4 114 56.1
EL10Ac5g11964 Beta vulgaris HOM05D014031 ORTHO05D000022 5.6e-22 108.6 114 54.4
EL10Ac4g09742 Beta vulgaris HOM05D014031 ORTHO05D000022 3.8e-18 95.9 87 50.6
EL10Ac1g02234 Beta vulgaris HOM05D008685 ORTHO05D000022 1.9e-17 93.6 200 27.5
AUR62034246 Chenopodium quinoa HOM05D019958 ORTHO05D000022 4.2e-17 92.4 230 28.3
AUR62036905 Chenopodium quinoa HOM05D000219 ORTHO05D000226 4.2e-17 92.4 188 33.0
EL10Ac2g04336 Beta vulgaris HOM05D008685 ORTHO05D000022 9.3e-17 91.3 193 28.5
EL10Ac3g05611 Beta vulgaris HOM05D000003 ORTHO05D000022 9.6e-14 81.3 209 24.4
AUR62042522 Chenopodium quinoa HOM05D007123 ORTHO05D000233 1.4e-12 77.4 127 36.2
AUR62010817 Chenopodium quinoa HOM05D008685 ORTHO05D000022 4.0e-12 75.9 149 30.9
Lj5g0005529 Lotus japonicus HOM05D000003 ORTHO05D000022 2.0e-11 73.6 200 27.5
CSS0041590 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.4e-11 72.8 225 24.9
AUR62019281 Chenopodium quinoa HOM05D008685 ORTHO05D000022 5.8e-11 72.0 160 30.6
Thecc.04G008500 Theobroma cacao HOM05D000088 ORTHO05D000830 5.8e-11 72.0 139 32.4
VMungo0540G0582 Vigna mungo HOM05D000774 ORTHO05D000602 5.8e-11 72.0 165 28.5
AUR62034691 Chenopodium quinoa HOM05D008685 ORTHO05D000022 9.9e-11 71.2 139 28.8
AUR62011900 Chenopodium quinoa HOM05D008685 ORTHO05D000022 1.3e-10 70.9 154 31.8
AUR62042608 Chenopodium quinoa HOM05D008685 ORTHO05D000022 1.3e-10 70.9 158 31.6
PSO133G0054 Papaver somniferum HOM05D000003 ORTHO05D000004 1.7e-10 70.5 186 25.3
EL10Ac3g06162 Beta vulgaris HOM05D008685 ORTHO05D000022 2.9e-10 69.7 130 33.1
SGA_v2.0_scaffold245G44722 Striga asiatica HOM05D000155 ORTHO05D000022 2.9e-10 69.7 128 32.0
AUR62043782 Chenopodium quinoa HOM05D008685 ORTHO05D000022 4.9e-10 68.9 139 33.1
FvH4_3g28461 Fragaria vesca HOM05D000003 ORTHO05D014631 6.4e-10 68.6 208 25.5
Thecc.06G025800 Theobroma cacao HOM05D000003 ORTHO05D000022 6.4e-10 68.6 137 29.2
Thecc.10G084500 Theobroma cacao HOM05D000003 ORTHO05D011148 8.4e-10 68.2 175 28.0
EL10Ac8g18564 Beta vulgaris HOM05D034106 ORTHO05D030997 1.1e-09 67.8 136 27.9
CSS0036731 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.1e-09 67.8 225 24.0
EL10Ac4g08331 Beta vulgaris HOM05D008685 ORTHO05D000022 1.9e-09 67.0 136 30.9
QL01p018268 Quercus lobata HOM05D000155 ORTHO05D000022 2.4e-09 66.6 152 29.6
PGSC0003DMG400006521 Solanum tuberosum HOM05D008381 ORTHO05D004636 4.2e-09 65.9 168 30.4
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 5.4e-09 65.5 220 25.0
Aqoxy1G03910 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 5.4e-09 65.5 209 24.4
MBI06_g11890_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.4e-09 65.5 195 26.2
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 5.4e-09 65.5 137 30.7
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 7.1e-09 65.1 223 22.4
Aqoxy6G02045 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 7.1e-09 65.1 206 24.8
AUR62020106 Chenopodium quinoa HOM05D008685 ORTHO05D000022 7.1e-09 65.1 104 35.6
AUR62038314 Chenopodium quinoa HOM05D008685 ORTHO05D000022 7.1e-09 65.1 130 31.5
RcHm_v2.0_Chr5g0074971 Rosa chinensis HOM05D000003 ORTHO05D000022 7.1e-09 65.1 123 30.1
Thecc.06G023800 Theobroma cacao HOM05D000003 ORTHO05D000006 7.1e-09 65.1 137 27.0
CSS0032736 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 9.3e-09 64.7 225 24.0
AUR62024214 Chenopodium quinoa HOM05D008685 ORTHO05D000022 9.3e-09 64.7 136 29.4
Cc00_g20180 Coffea canephora HOM05D000155 ORTHO05D000022 9.3e-09 64.7 182 26.4
Nitab4.5_0008516g0020 Nicotiana tabacum HOM05D008306 ORTHO05D004636 9.3e-09 64.7 79 40.5
Thecc.04G017600 Theobroma cacao HOM05D000285 ORTHO05D000241 9.3e-09 64.7 186 26.9
vmacro01820 Vaccinium macrocarpon HOM05D001647 ORTHO05D001191 9.3e-09 64.7 224 23.2
COL.COLO4_19293 Corchorus olitorius HOM05D000155 ORTHO05D000022 1.2e-08 64.3 132 28.0
Atru.chr11.1731 Acer truncatum HOM05D000003 ORTHO05D000167 1.6e-08 63.9 201 28.4
QL01p016224 Quercus lobata HOM05D000155 ORTHO05D000022 1.6e-08 63.9 147 29.9
QL01p016208 Quercus lobata HOM05D000155 ORTHO05D000022 2.1e-08 63.5 147 29.9
SHI53806 Sapria himalayana HOM05D004990 ORTHO05D000022 2.1e-08 63.5 128 33.6
EL10Ac8g19034 Beta vulgaris HOM05D008685 ORTHO05D000022 2.7e-08 63.2 100 31.0
AUR62028578 Chenopodium quinoa HOM05D008685 ORTHO05D000022 2.7e-08 63.2 156 26.3
AUR62043189 Chenopodium quinoa HOM05D008685 ORTHO05D000022 2.7e-08 63.2 128 33.6
COL.COLO4_30555 Corchorus olitorius HOM05D000003 ORTHO05D000167 2.7e-08 63.2 135 26.7
QL01p016211 Quercus lobata HOM05D000155 ORTHO05D000022 2.7e-08 63.2 147 30.6
AUR62039008 Chenopodium quinoa HOM05D008685 ORTHO05D000022 3.5e-08 62.8 102 35.3
COL.COLO4_23207 Corchorus olitorius HOM05D009774 ORTHO05D000167 3.5e-08 62.8 197 25.4
AUR62034846 Chenopodium quinoa HOM05D008685 ORTHO05D000022 4.6e-08 62.4 106 33.0
AUR62014610 Chenopodium quinoa HOM05D000003 ORTHO05D011948 6.0e-08 62.0 219 26.0
QL03p010769 Quercus lobata HOM05D000155 ORTHO05D000022 6.0e-08 62.0 137 27.0
RcHm_v2.0_Chr2g0146161 Rosa chinensis HOM05D000003 ORTHO05D000022 6.0e-08 62.0 219 21.9
AUR62034456 Chenopodium quinoa HOM05D000091 ORTHO05D001510 7.9e-08 61.6 150 28.0
QL10p011272 Quercus lobata HOM05D000003 ORTHO05D000167 7.9e-08 61.6 200 28.5
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 1.0e-07 61.2 218 24.8
SHI36923 Sapria himalayana HOM05D004990 ORTHO05D000022 1.0e-07 61.2 203 24.6
SHI43080 Sapria himalayana HOM05D004990 ORTHO05D000022 1.0e-07 61.2 77 35.1
SHI47710 Sapria himalayana HOM05D000024 ORTHO05D000022 1.0e-07 61.2 109 33.0
EL10As2g23251 Beta vulgaris HOM05D007742 ORTHO05D004072 1.3e-07 60.8 136 27.9
AUR62042595 Chenopodium quinoa HOM05D008685 ORTHO05D000022 1.8e-07 60.5 120 30.0
Lalb_Chr18g0059991 Lupinus albus HOM05D000155 ORTHO05D000022 1.8e-07 60.5 166 27.7
Nitab4.5_0001319g0020 Nicotiana tabacum HOM05D008381 ORTHO05D004636 1.8e-07 60.5 164 29.3
Prupe.1G162400 Prunus persica HOM05D000003 ORTHO05D000022 1.8e-07 60.5 184 27.2
SHI49338 Sapria himalayana HOM05D000024 ORTHO05D000007 1.8e-07 60.5 146 26.0
Actinidia31778 Actinidia chinensis HOM05D000155 ORTHO05D000022 2.3e-07 60.1 70 37.1
AUR62013403 Chenopodium quinoa HOM05D008685 ORTHO05D000022 2.3e-07 60.1 132 31.8
Nitab4.5_0000296g0070 Nicotiana tabacum HOM05D008306 ORTHO05D004636 2.3e-07 60.1 97 34.0
Atru.chr8.67 Acer truncatum HOM05D000003 ORTHO05D000167 3.0e-07 59.7 194 27.3
FvH4_1g18911 Fragaria vesca HOM05D009322 ORTHO05D010713 3.0e-07 59.7 199 25.1
QL04p014896 Quercus lobata HOM05D000003 ORTHO05D000022 3.0e-07 59.7 104 26.9
Aqoxy4G00752 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 3.9e-07 59.3 128 32.0
RcHm_v2.0_Chr4g0406871 Rosa chinensis HOM05D000003 ORTHO05D000004 3.9e-07 59.3 193 22.8
Thecc.10G094100 Theobroma cacao HOM05D000003 ORTHO05D000022 3.9e-07 59.3 107 32.7
SHI34203 Sapria himalayana HOM05D000024 ORTHO05D000007 5.1e-07 58.9 124 29.0
AUR62034485 Chenopodium quinoa HOM05D008685 ORTHO05D000022 6.7e-07 58.5 63 42.9
MD11G1210000 Malus domestica HOM05D000279 ORTHO05D000498 6.7e-07 58.5 82 36.6
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 6.7e-07 58.5 152 27.0
COL.COLO4_24957 Corchorus olitorius HOM05D003639 ORTHO05D004246 8.7e-07 58.2 89 34.8
COL.COLO4_35856 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.1e-06 57.8 125 26.4
Lj6g0012103 Lotus japonicus HOM05D000155 ORTHO05D000022 1.1e-06 57.8 166 25.9
MBI19_g04943_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.1e-06 57.8 140 27.1
RcHm_v2.0_Chr1g0337971 Rosa chinensis HOM05D008833 ORTHO05D010662 1.1e-06 57.8 108 30.6
RcHm_v2.0_Chr1g0339401 Rosa chinensis HOM05D008833 ORTHO05D010662 1.1e-06 57.8 108 30.6
Atru.chr3.1505 Acer truncatum HOM05D000003 ORTHO05D000022 1.5e-06 57.4 217 23.5
Cc02_g12270 Coffea canephora HOM05D000155 ORTHO05D000022 1.5e-06 57.4 138 28.3
Lj4g0002379 Lotus japonicus HOM05D000003 ORTHO05D000022 1.5e-06 57.4 216 24.1
Os06g0683500 Oryza sativa ssp. japonica HOM05D000155 ORTHO05D000022 1.5e-06 57.4 133 32.3
Actinidia24692 Actinidia chinensis HOM05D000155 ORTHO05D000022 1.9e-06 57.0 70 38.6
Actinidia26986 Actinidia chinensis HOM05D000774 ORTHO05D000602 1.9e-06 57.0 135 28.9
arahy.Tifrunner.gnm1.ann1.GCX8RD Arachis hypogaea HOM05D000155 ORTHO05D000022 1.9e-06 57.0 174 28.7
CSS0043774 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 1.9e-06 57.0 197 25.4
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.9e-06 57.0 162 29.0
Lalb_Chr17g0341421 Lupinus albus HOM05D014548 ORTHO05D016940 1.9e-06 57.0 154 26.6
Nitab4.5_0000297g0200 Nicotiana tabacum HOM05D008381 ORTHO05D004636 1.9e-06 57.0 71 36.6
PSO591G0449 Papaver somniferum HOM05D000155 ORTHO05D000022 1.9e-06 57.0 182 23.6
Peaxi162Scf00129g00613 Petunia axillaris HOM05D000003 ORTHO05D026350 1.9e-06 57.0 86 37.2
Atru.chr6.748 Acer truncatum HOM05D000003 ORTHO05D000004 2.5e-06 56.6 196 27.0
AUR62042087 Chenopodium quinoa HOM05D008685 ORTHO05D000022 2.5e-06 56.6 125 29.6
Nitab4.5_0001055g0020 Nicotiana tabacum HOM05D008381 ORTHO05D004636 2.5e-06 56.6 162 27.8
Nitab4.5_0003210g0020 Nicotiana tabacum HOM05D008306 ORTHO05D004636 2.5e-06 56.6 217 24.9
PSO782G4857 Papaver somniferum HOM05D000003 ORTHO05D001026 2.5e-06 56.6 129 27.9
Atru.chr6.1288 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-06 56.2 154 34.4
arahy.Tifrunner.gnm1.ann1.XP25HR Arachis hypogaea HOM05D000774 ORTHO05D000602 3.3e-06 56.2 139 29.5
CSS0020179 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.3e-06 56.2 195 27.2
Cpa.g.sc263.16 Carica papaya HOM05D000003 ORTHO05D000022 3.3e-06 56.2 95 34.7
Lalb_Chr20g0122381 Lupinus albus HOM05D000155 ORTHO05D000022 3.3e-06 56.2 159 29.6
Os03g0158600 Oryza sativa ssp. japonica HOM05D000155 ORTHO05D000022 3.3e-06 56.2 159 28.9
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 3.3e-06 56.2 223 22.9
QL08p016074 Quercus lobata HOM05D000013 ORTHO05D000011 3.3e-06 56.2 67 41.8
RcHm_v2.0_Chr2g0144631 Rosa chinensis HOM05D000003 ORTHO05D000022 3.3e-06 56.2 192 24.5
SHI19656 Sapria himalayana HOM05D004990 ORTHO05D000022 3.3e-06 56.2 77 36.4
Atru.chr11.167 Acer truncatum HOM05D000003 ORTHO05D000006 4.3e-06 55.8 198 26.8
CARHR228090 Cardamine hirsuta HOM05D000155 ORTHO05D000022 4.3e-06 55.8 157 27.4
COL.COLO4_13164 Corchorus olitorius HOM05D009774 ORTHO05D000167 4.3e-06 55.8 137 29.9
FvH4_2g12671 Fragaria vesca HOM05D000003 ORTHO05D000022 4.3e-06 55.8 113 29.2
PSO339G5198 Papaver somniferum HOM05D000155 ORTHO05D000022 4.3e-06 55.8 78 34.6
SHI49928 Sapria himalayana HOM05D000024 ORTHO05D000007 4.3e-06 55.8 153 27.5
TPR.G21331 Trifolium pratense HOM05D000003 ORTHO05D000022 4.3e-06 55.8 65 36.9
Atru.chr4.2041 Acer truncatum HOM05D000003 ORTHO05D000167 5.6e-06 55.5 205 26.3
AUR62032019 Chenopodium quinoa HOM05D019958 ORTHO05D000022 5.6e-06 55.5 47 46.8
Cc04_g14660 Coffea canephora HOM05D000003 ORTHO05D000167 5.6e-06 55.5 228 24.1
Lj4g0002254 Lotus japonicus HOM05D000003 ORTHO05D000022 5.6e-06 55.5 71 42.3
Nitab4.5_0002922g0020 Nicotiana tabacum HOM05D000155 ORTHO05D000022 5.6e-06 55.5 76 35.5
Rhsim13G0169200 Rhododendron simsii HOM05D000155 ORTHO05D000022 5.6e-06 55.5 134 30.6
RcHm_v2.0_Chr5g0041361 Rosa chinensis HOM05D000279 ORTHO05D000022 5.6e-06 55.5 74 36.5
Sabra04G0049100 Salix brachista HOM05D000003 ORTHO05D000007 5.6e-06 55.5 149 24.2
SHI43336 Sapria himalayana HOM05D000024 ORTHO05D000007 5.6e-06 55.5 107 31.8
SHI49810 Sapria himalayana HOM05D004990 ORTHO05D000022 5.6e-06 55.5 165 25.5
AUR62003722 Chenopodium quinoa HOM05D000155 ORTHO05D000022 7.4e-06 55.1 78 35.9
Haze_05315 Corylus avellana HOM05D022711 ORTHO05D000126 7.4e-06 55.1 147 27.2
Psat5g042040 Pisum sativum HOM05D000003 ORTHO05D000022 7.4e-06 55.1 120 27.5
vmacro06797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000022 7.4e-06 55.1 78 29.5
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 9.6e-06 54.7 195 25.6
arahy.Tifrunner.gnm1.ann1.S8SYMB Arachis hypogaea HOM05D040955 ORTHO05D038905 9.6e-06 54.7 62 40.3
arahy.Tifrunner.gnm1.ann1.YVVB9L Arachis hypogaea HOM05D040955 ORTHO05D038905 9.6e-06 54.7 62 40.3
Nitab4.5_0001962g0120 Nicotiana tabacum HOM05D000003 ORTHO05D000022 9.6e-06 54.7 146 29.5
Sopen10g006600 Solanum pennellii HOM05D000003 ORTHO05D001349 9.6e-06 54.7 89 34.8
TPR.G1810 Trifolium pratense HOM05D000290 ORTHO05D007415 9.6e-06 54.7 152 28.3


User provided reference genes

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