Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 6.7e-224 780.4 404 100.0
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.0e-176 623.6 415 79.5
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 1.7e-174 616.3 414 78.0
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 2.4e-173 612.5 421 78.6
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 3.3e-154 548.9 435 69.7
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 2.7e-140 502.7 407 66.8
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 4.6e-140 501.9 381 68.5
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 2.5e-138 496.1 357 70.9
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 2.5e-138 496.1 419 64.0
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 4.3e-138 495.4 414 64.5
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 9.5e-138 494.2 372 67.7
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 1.2e-137 493.8 337 73.0
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 8.1e-137 491.1 403 64.3
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 1.4e-136 490.3 418 63.2
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 4.0e-136 488.8 335 73.7
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 5.2e-136 488.4 330 72.7
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 6.8e-136 488.0 345 71.9
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 6.8e-136 488.0 347 70.6
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 6.8e-136 488.0 337 73.3
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 8.9e-136 487.6 347 70.6
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 2.0e-135 486.5 345 71.6
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 3.4e-135 485.7 360 69.4
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 5.8e-135 485.0 327 72.8
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 9.9e-135 484.2 333 73.3
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 9.9e-135 484.2 358 68.4
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 9.9e-135 484.2 341 72.7
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 6.4e-134 481.5 345 70.4
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 8.4e-134 481.1 410 62.0
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 8.4e-134 481.1 356 68.8
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 1.1e-133 480.7 339 71.1
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 1.4e-133 480.3 344 70.6
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 2.4e-133 479.6 341 71.0
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 4.1e-133 478.8 389 64.5
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 9.2e-133 477.6 358 68.4
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 9.2e-133 477.6 401 63.3
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 1.2e-132 477.2 403 63.5
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 1.2e-132 477.2 353 68.6
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 1.6e-132 476.9 360 68.1
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 2.1e-132 476.5 418 61.2
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 2.1e-132 476.5 383 64.8
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 2.7e-132 476.1 370 68.4
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 3.5e-132 475.7 338 71.0
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 4.6e-132 475.3 338 70.4
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 6.0e-132 474.9 400 62.2
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 1.3e-131 473.8 264 95.1
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 6.6e-131 471.5 337 70.0
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 6.6e-131 471.5 405 61.7
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 8.6e-131 471.1 388 65.2
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 8.6e-131 471.1 408 61.3
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 4.3e-130 468.8 331 70.4
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 4.3e-130 468.8 398 61.8
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 1.2e-129 467.2 321 71.7
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 1.6e-129 466.8 295 77.6
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 1.6e-129 466.8 388 61.9
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 4.7e-129 465.3 328 71.3
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 4.7e-129 465.3 409 62.6
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 8.1e-129 464.5 340 69.7
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 8.1e-129 464.5 350 68.3
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 1.1e-128 464.2 354 66.7
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 1.4e-128 463.8 305 75.4
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 1.8e-128 463.4 365 65.8
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 1.5e-127 460.3 297 78.1
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 1.5e-127 460.3 372 63.2
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 4.9e-126 455.3 392 62.5
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 1.1e-125 454.1 353 64.9
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 1.9e-125 453.4 328 68.6
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 2.4e-125 453.0 362 64.6
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 3.2e-125 452.6 348 67.0
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 6.0e-124 448.4 320 69.4
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 7.8e-124 448.0 374 61.8
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 1.3e-123 447.2 318 70.8
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 6.6e-123 444.9 388 63.1
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 1.5e-122 443.7 401 58.4
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 1.9e-122 443.4 331 66.5
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 1.3e-121 440.7 397 59.4
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.3e-121 440.7 417 57.1
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 1.1e-120 437.6 333 66.1
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 3.1e-120 436.0 277 78.0
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 1.2e-119 434.1 339 64.6
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 1.3e-118 430.6 347 62.2
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 2.9e-118 429.5 277 76.5
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 3.8e-118 429.1 284 75.7
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 3.2e-117 426.0 343 64.1
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 7.1e-117 424.9 354 63.6
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 6.7e-115 418.3 351 65.2
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 1.4e-112 410.6 371 57.1
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 1.2e-111 407.5 263 76.8
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 3.0e-107 392.9 366 57.1
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 1.9e-106 390.2 495 46.5
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 3.4e-103 379.4 386 54.7
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 4.5e-103 379.0 389 56.6
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.1e-101 374.4 430 49.3
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 2.5e-101 373.2 340 58.8
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 6.0e-100 368.6 353 56.1
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 4.3e-98 362.5 393 52.2
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 1.3e-94 350.9 289 63.0
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 2.7e-92 343.2 283 62.5
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 1.3e-86 324.3 238 67.6
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 1.4e-85 320.9 254 65.0
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 7.2e-85 318.5 274 60.6
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 2.6e-82 310.1 244 66.8
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 1.7e-81 307.4 232 69.4
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 1.4e-80 304.3 382 47.1
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 2.6e-79 300.1 323 48.3
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 5.0e-78 295.8 293 57.3
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 2.6e-74 283.5 283 54.8
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 5.0e-70 269.2 201 66.7
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 7.7e-63 245.4 155 76.1
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 1.7e-62 244.2 186 69.4
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 1.9e-61 240.7 157 72.6
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 2.4e-56 223.8 149 73.2
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 2.3e-54 217.2 198 61.6
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 8.6e-46 188.7 200 54.5
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 9.5e-29 132.1 114 58.8
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 5.2e-27 126.3 114 56.1
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 1.5e-26 124.8 138 52.2
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 3.7e-25 120.2 96 65.6
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 7.8e-23 112.5 108 53.7
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 4.0e-19 100.1 92 57.6
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 4.2e-16 90.1 106 45.3
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 6.6e-14 82.8 212 39.2
Cpa.g.c43318 Carica papaya HOM05D006104 ORTHO05D117575 8.7e-14 82.4 253 28.1
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 6.4e-09 66.2 35 82.9
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 3.2e-08 63.9 70 52.9


User provided reference genes

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