Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01284 Beta vulgaris HOM05D006784 ORTHO05D008508 2.1e-188 662.1 328 100.0
AUR62038543 Chenopodium quinoa HOM05D006784 ORTHO05D008508 1.2e-135 486.9 329 77.2
AUR62013392 Chenopodium quinoa HOM05D006784 ORTHO05D008508 4.4e-133 478.4 326 75.8
Hund26939 Selenicereus undatus HOM05D006784 ORTHO05D008508 3.4e-125 452.2 326 66.9
GSVIVG01037159001 Vitis vinifera HOM05D006784 ORTHO05D008508 2.8e-119 432.6 323 66.9
CSS0003574 Camellia sinensis var. sinensis HOM05D006784 ORTHO05D008508 4.4e-117 425.2 295 67.8
Dinv08766 Davidia involucrata HOM05D006784 ORTHO05D008508 4.4e-117 425.2 293 68.9
TAR376G1107 Trochodendron aralioides HOM05D006784 ORTHO05D008508 9.8e-117 424.1 282 72.0
Sc23g0000020 Simmondsia chinensis HOM05D006784 ORTHO05D008508 1.1e-115 420.6 288 69.8
Atru.chr13.2579 Acer truncatum HOM05D006784 ORTHO05D008508 2.1e-114 416.4 325 65.2
Actinidia01543 Actinidia chinensis HOM05D006784 ORTHO05D008508 2.1e-114 416.4 302 65.6
QL09p001285 Quercus lobata HOM05D006784 ORTHO05D008508 2.7e-114 416.0 323 65.0
Manes.02G202800 Manihot esculenta HOM05D006784 ORTHO05D008508 3.0e-113 412.5 329 64.4
Rhsim12G0001900 Rhododendron simsii HOM05D006784 ORTHO05D008508 3.9e-113 412.1 329 63.2
Thecc.08G168600 Theobroma cacao HOM05D006784 ORTHO05D008508 3.9e-113 412.1 323 64.1
Lalb_Chr15g0080091 Lupinus albus HOM05D006784 ORTHO05D008508 8.6e-113 411.0 311 63.7
Potri.013G095300 Populus trichocarpa HOM05D006784 ORTHO05D008508 2.1e-111 406.4 310 66.5
MBI03_g07138_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D008508 3.6e-111 405.6 320 62.5
Medtr3g006210 Medicago truncatula HOM05D006784 ORTHO05D008508 3.6e-111 405.6 303 62.7
PSO761G0491 Papaver somniferum HOM05D006784 ORTHO05D008508 1.8e-110 403.3 292 64.4
PSO210G0863 Papaver somniferum HOM05D006784 ORTHO05D008508 4.0e-110 402.1 292 63.7
Oeu035045.1 Olea europaea HOM05D006784 ORTHO05D008508 5.2e-110 401.7 304 65.5
DCAR_003507 Daucus carota HOM05D006784 ORTHO05D008508 8.9e-110 401.0 295 65.1
CANSAT11G0581 Cannabis sativa HOM05D006784 ORTHO05D008508 4.4e-109 398.7 305 65.9
Sabra13G0081300 Salix brachista HOM05D006784 ORTHO05D008508 4.4e-109 398.7 332 62.0
TPR.G25500 Trifolium pratense HOM05D006784 ORTHO05D008508 9.9e-109 397.5 301 62.8
Gorai.009G262200 Gossypium raimondii HOM05D006784 ORTHO05D008508 2.9e-108 396.0 293 64.8
RcHm_v2.0_Chr6g0249611 Rosa chinensis HOM05D006784 ORTHO05D008508 2.9e-108 396.0 310 63.9
Sed0009601 Sechium edule HOM05D006784 ORTHO05D008508 3.7e-108 395.6 315 62.5
Cc10_g16080 Coffea canephora HOM05D006784 ORTHO05D008508 4.9e-108 395.2 294 64.3
Nn5g27234 Nelumbo nucifera HOM05D006784 ORTHO05D008508 1.6e-106 390.2 294 63.6
Ciclev10021219m.g Citrus clementina HOM05D006784 ORTHO05D008508 2.7e-106 389.4 324 61.4
FvH4_2g00320 Fragaria vesca HOM05D006784 ORTHO05D008508 8.6e-105 384.4 324 61.1
ClCG08G001730 Citrullus lanatus HOM05D006784 ORTHO05D008508 4.3e-104 382.1 310 61.0
Eucgr.F02928 Eucalyptus grandis HOM05D006784 ORTHO05D008508 5.6e-104 381.7 323 60.7
Glyma.04G110300 Glycine max HOM05D006784 ORTHO05D008508 7.3e-104 381.3 294 60.5
arahy.Tifrunner.gnm1.ann1.9TUP5I Arachis hypogaea HOM05D006784 ORTHO05D008508 4.7e-103 378.6 294 62.2
Sopen11g020490 Solanum pennellii HOM05D006784 ORTHO05D008508 4.7e-103 378.6 331 59.5
ECA232G1810 Erigeron canadensis HOM05D006784 ORTHO05D008508 8.1e-103 377.9 313 59.4
Migut.C01398 Erythranthe guttata HOM05D006784 ORTHO05D008508 8.1e-103 377.9 315 59.4
MELO3C022124.2 Cucumis melo HOM05D006784 ORTHO05D008508 1.4e-102 377.1 323 59.1
arahy.Tifrunner.gnm1.ann1.VA03RP Arachis hypogaea HOM05D006784 ORTHO05D008508 4.0e-102 375.6 312 59.0
CsaV3_5G039470 Cucumis sativus L. HOM05D006784 ORTHO05D008508 5.8e-101 371.7 317 58.7
CARHR064620 Cardamine hirsuta HOM05D006784 ORTHO05D008508 7.6e-101 371.3 327 56.9
Aa31LG4G9210 Aethionema arabicum HOM05D006784 ORTHO05D008508 4.9e-100 368.6 325 57.5
AL2G31000 Arabidopsis lyrata HOM05D006784 ORTHO05D008508 1.1e-99 367.5 327 57.2
Thhalv10019786m.g Eutrema salsugineum HOM05D006784 ORTHO05D008508 1.1e-99 367.5 325 56.9
Glyma.06G323800 Glycine max HOM05D006784 ORTHO05D008508 2.4e-99 366.3 294 59.5
BcaB03g14890 Brassica carinata HOM05D006784 ORTHO05D008508 3.2e-99 365.9 325 56.6
BraA07t31326Z Brassica rapa HOM05D006784 ORTHO05D008508 4.2e-99 365.5 327 56.0
AT1G71340 Arabidopsis thaliana HOM05D006784 ORTHO05D008508 7.1e-99 364.8 326 55.5
A07p37620 Brassica napus HOM05D006784 ORTHO05D008508 9.3e-99 364.4 325 56.3
HanXRQChr09g0266871 Helianthus annuus HOM05D006784 ORTHO05D008508 9.3e-99 364.4 294 58.5
Carub.0002s1820 Capsella rubella HOM05D006784 ORTHO05D008508 1.6e-98 363.6 327 56.6
FAN24G3159 Fragaria x ananassa HOM05D006784 ORTHO05D008508 6.0e-98 361.7 272 65.4
ATR1089G080 Amborella trichopoda HOM05D006784 ORTHO05D008508 1.0e-97 360.9 291 60.1
Phvul.005G002500 Phaseolus vulgaris HOM05D006784 ORTHO05D008508 5.1e-97 358.6 290 59.0
Sp5g26500 Schrenkiella parvula HOM05D006784 ORTHO05D008508 6.6e-97 358.2 325 55.4
CAN.G567.5 Capsicum annuum HOM05D006784 ORTHO05D008508 8.7e-97 357.8 267 65.2
Lj7A416T40 Lonicera japonica HOM05D006784 ORTHO05D008508 1.1e-96 357.5 288 63.5
VMungo1080G0261 Vigna mungo HOM05D001255 ORTHO05D001246 1.1e-96 357.5 304 55.3
THA.LOC104809757 Tarenaya hassleriana HOM05D006784 ORTHO05D008508 3.6e-95 352.4 321 55.1
BolC6t39596H Brassica oleracea HOM05D006784 ORTHO05D008508 8.1e-95 351.3 317 56.2
unitig_46.g17979 Utricularia gibba HOM05D006784 ORTHO05D008508 4.0e-94 349.0 294 58.8
C06p45390 Brassica napus HOM05D006784 ORTHO05D008508 1.2e-93 347.4 317 55.5
BcaC08g46565 Brassica carinata HOM05D006784 ORTHO05D008508 2.0e-93 346.7 317 55.8
Lsat_1_v5_gn_4_133060 Lactuca sativa HOM05D006784 ORTHO05D008508 9.9e-93 344.4 282 58.9
TWI12G0477 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 1.7e-92 343.6 275 64.0
SEGI_09486 Sequoiadendron giganteum HOM05D006784 ORTHO05D008508 2.2e-92 343.2 303 54.1
Gohir.A05G248533 Gossypium hirsutum HOM05D006784 ORTHO05D008508 3.9e-89 332.4 264 61.0
Lj3g0009982 Lotus japonicus HOM05D006784 ORTHO05D008508 3.9e-89 332.4 316 51.6
vmacro00953 Vaccinium macrocarpon HOM05D006784 ORTHO05D008508 2.5e-88 329.7 279 58.8
Nitab4.5_0000079g0180 Nicotiana tabacum HOM05D006784 ORTHO05D008508 7.4e-88 328.2 348 50.6
HPP92_019449 Vanilla planifolia HOM05D006784 ORTHO05D008508 3.1e-86 322.8 298 53.7
Duzib177G0427 Durio zibethinus HOM05D006784 ORTHO05D008508 9.9e-85 317.8 325 52.3
PGR119G1188 Punica granatum HOM05D006784 ORTHO05D008508 5.6e-80 302.0 351 48.7
Mapoly0041s0058 Marchantia polymorpha HOM05D006784 ORTHO05D008508 8.4e-76 288.1 326 44.8
CiPaw.03G012700 Carya illinoinensis HOM05D006784 ORTHO05D008508 2.5e-75 286.6 203 68.5
Nitab4.5_0001489g0040 Nicotiana tabacum HOM05D006784 ORTHO05D008508 7.1e-75 285.0 294 53.1
Prupe.8G003500 Prunus persica HOM05D006784 ORTHO05D008508 6.3e-71 271.9 211 63.0
Aqoxy5G01860 Aquilegia oxysepala HOM05D006784 ORTHO05D008508 1.4e-70 270.8 205 62.4
Ah.05g170450 Amaranthus hybridus HOM05D006784 ORTHO05D008508 3.1e-70 269.6 293 54.3
Ca_13985_v3 Cicer arietinum L. HOM05D006784 ORTHO05D008508 5.0e-68 262.3 206 59.2
Solyc11g045040.2 Solanum lycopersicum HOM05D006784 ORTHO05D008508 7.2e-67 258.5 211 61.1
Psat5g232280 Pisum sativum HOM05D006784 ORTHO05D008508 4.6e-66 255.8 211 58.3
Cpa.g.sc142.7 Carica papaya HOM05D006784 ORTHO05D008508 1.0e-65 254.6 268 52.6
SGA_v2.0_scaffold118G32637 Striga asiatica HOM05D006784 ORTHO05D008508 1.8e-65 253.8 327 47.4
FAN19G1248 Fragaria x ananassa HOM05D006784 ORTHO05D008508 2.2e-60 236.9 273 49.8
CDE08G1443 Ceratophyllum demersum HOM05D006784 ORTHO05D008508 1.1e-59 234.6 241 51.9
AagrBONN_evm.TU.Sc2ySwM_344.2721 Anthoceros agrestis HOM05D006784 ORTHO05D008508 2.1e-58 230.3 288 43.8
Gohir.D05G250801 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.4e-51 207.6 170 58.8
TWI12G0001 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 1.4e-49 201.1 288 43.8
Haze_14004 Corylus avellana HOM05D006784 ORTHO05D008508 5.9e-45 185.7 184 52.7
COL.COLO4_25079 Corchorus olitorius HOM05D006784 ORTHO05D008508 6.5e-44 182.2 121 71.9
Zm00001eb167850 Zea mays HOM05D006784 ORTHO05D008508 1.5e-43 181.0 213 43.7
HPP92_019452 Vanilla planifolia HOM05D006784 ORTHO05D008508 2.2e-39 167.2 128 62.5
Cre02.g115750 Chlamydomonas reinhardtii HOM05D006784 ORTHO05D008508 2.8e-39 166.8 301 35.2
Hma1.2p1_0238F.1_g099740 Hydrangea macrophylla HOM05D006784 ORTHO05D008508 1.6e-34 151.0 110 64.5
Peaxi162Scf00078g01023 Petunia axillaris HOM05D006784 ORTHO05D008508 4.0e-33 146.4 137 53.3
Peaxi162Scf00078g01017 Petunia axillaris HOM05D006784 ORTHO05D008508 1.5e-32 144.4 96 72.9
PGSC0003DMG402006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 1.7e-28 131.0 91 70.3
FAN20G3191 Fragaria x ananassa HOM05D006784 ORTHO05D008508 9.5e-27 125.2 120 56.7
PGSC0003DMG401006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 2.8e-26 123.6 128 52.3
Os11g0236000 Oryza sativa ssp. japonica HOM05D006784 ORTHO05D008508 1.0e-25 121.7 80 62.5
MD05G1006200 Malus domestica HOM05D006784 ORTHO05D008508 3.4e-24 116.7 79 70.9
CBR_g18896 Chara braunii HOM05D006784 ORTHO05D008508 2.4e-22 110.5 162 34.0
FvH4_2g04920 Fragaria vesca HOM05D006784 ORTHO05D008508 4.1e-22 109.8 177 39.5
Gorai.005G166200 Gossypium raimondii HOM05D006784 ORTHO05D008508 5.9e-21 105.9 74 63.5
Gohir.D08G237350 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.7e-20 104.4 74 62.2
MCO03G046 Micromonas commoda HOM05D006784 ORTHO05D008508 1.9e-19 100.9 284 26.1
Atru.chr7.394 Acer truncatum HOM05D006784 ORTHO05D008508 1.5e-16 91.3 66 62.1
QL09p001297 Quercus lobata HOM05D006784 ORTHO05D008508 1.5e-16 91.3 87 56.3
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 5.0e-12 76.3 216 27.3
FAN20G2921 Fragaria x ananassa HOM05D006784 ORTHO05D008508 4.0e-09 66.6 158 31.0
FAN20G2925 Fragaria x ananassa HOM05D006784 ORTHO05D008508 4.0e-09 66.6 158 31.0
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 1.5e-08 64.7 47 68.1
FAN24G0543 Fragaria x ananassa HOM05D006784 ORTHO05D008508 2.6e-08 63.9 152 30.9
Gorai.004G102800 Gossypium raimondii HOM05D006784 ORTHO05D008508 3.4e-08 63.5 44 63.6
Cre02.g113050 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D008508 1.4e-06 58.2 133 33.1
Pp3c7_10090 Physcomitrium patens HOM05D006784 ORTHO05D008508 7.0e-06 55.8 139 31.7
FAN20G2451 Fragaria x ananassa HOM05D009889 ORTHO05D003215 9.2e-06 55.5 43 65.1


User provided reference genes

Program Settings