Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 5.1e-83 311.2 179 100.0
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 1.6e-28 130.2 95 65.3
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 3.3e-26 122.5 141 47.5
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 1.1e-24 117.5 77 67.5
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 1.4e-24 117.1 143 48.3
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 8.5e-22 107.8 89 60.7
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 2.5e-21 106.3 91 59.3
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 5.5e-21 105.1 95 53.7
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 7.2e-21 104.8 95 53.7
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 1.2e-20 104.0 95 55.8
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 1.2e-20 104.0 95 53.7
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 1.2e-20 104.0 95 53.7
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 1.2e-20 104.0 95 53.7
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 1.6e-20 103.6 86 58.1
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 2.1e-20 103.2 96 56.2
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 6.1e-20 101.7 90 54.4
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 1.4e-19 100.5 103 51.5
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 1.4e-19 100.5 89 55.1
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 1.8e-19 100.1 86 57.0
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 6.8e-19 98.2 98 52.0
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 6.8e-19 98.2 96 53.1
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 6.8e-19 98.2 88 54.5
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 1.2e-18 97.4 98 52.0
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.5e-18 97.1 81 59.3
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.0e-18 96.7 81 59.3
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 2.0e-18 96.7 81 59.3
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 2.0e-18 96.7 93 57.0
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 3.4e-18 95.9 86 52.3
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 3.4e-18 95.9 93 54.8
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 4.4e-18 95.5 93 54.8
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 5.7e-18 95.1 110 48.2
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 5.7e-18 95.1 80 63.8
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 7.5e-18 94.7 63 68.3
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 2.2e-17 93.2 95 52.6
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 2.2e-17 93.2 68 61.8
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 2.2e-17 93.2 81 56.8
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 2.2e-17 93.2 94 50.0
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 2.2e-17 93.2 94 50.0
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 2.8e-17 92.8 70 64.3
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 2.8e-17 92.8 99 49.5
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 2.8e-17 92.8 95 51.6
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 3.7e-17 92.4 80 57.5
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 4.8e-17 92.0 99 51.5
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 4.8e-17 92.0 94 51.1
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 4.8e-17 92.0 99 49.5
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 6.3e-17 91.7 62 66.1
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 8.3e-17 91.3 95 51.6
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 1.1e-16 90.9 90 54.4
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.1e-16 90.9 94 48.9
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.1e-16 90.9 94 48.9
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 1.8e-16 90.1 102 45.1
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 1.8e-16 90.1 98 46.9
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 2.4e-16 89.7 95 51.6
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 4.1e-16 89.0 104 46.2
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 5.4e-16 88.6 80 52.5
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 7.0e-16 88.2 106 47.2
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 7.0e-16 88.2 67 56.7
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 7.0e-16 88.2 74 54.1
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 9.1e-16 87.8 95 48.4
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 1.2e-15 87.4 93 50.5
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 1.2e-15 87.4 88 51.1
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 1.6e-15 87.0 70 60.0
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 1.6e-15 87.0 88 51.1
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 2.0e-15 86.7 104 48.1
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 2.0e-15 86.7 88 51.1
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 2.0e-15 86.7 62 62.9
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 2.7e-15 86.3 62 61.3
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 4.5e-15 85.5 93 51.6
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 4.5e-15 85.5 86 50.0
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 7.7e-15 84.7 75 54.7
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 1.0e-14 84.3 92 47.8
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 1.0e-14 84.3 92 47.8
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 1.0e-14 84.3 92 45.7
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 1.3e-14 84.0 104 46.2
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 1.3e-14 84.0 92 52.2
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 1.7e-14 83.6 104 44.2
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 2.2e-14 83.2 67 56.7
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 2.2e-14 83.2 95 48.4
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 2.2e-14 83.2 90 48.9
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 2.9e-14 82.8 104 45.2
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 2.9e-14 82.8 81 51.9
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 3.8e-14 82.4 102 44.1
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 3.8e-14 82.4 98 45.9
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 3.8e-14 82.4 83 49.4
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 5.0e-14 82.0 67 56.7
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 5.0e-14 82.0 89 47.2
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 5.0e-14 82.0 87 47.1
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 5.0e-14 82.0 97 43.3
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 6.5e-14 81.6 62 61.3
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 8.5e-14 81.3 101 44.6
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 8.5e-14 81.3 98 44.9
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 1.1e-13 80.9 64 57.8
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 1.5e-13 80.5 62 61.3
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 1.5e-13 80.5 62 61.3
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 1.9e-13 80.1 102 46.1
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.9e-13 80.1 80 48.8
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 1.9e-13 80.1 67 53.7
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 1.9e-13 80.1 93 45.2
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 2.5e-13 79.7 62 59.7
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 2.5e-13 79.7 100 44.0
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 3.2e-13 79.3 62 59.7
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 3.2e-13 79.3 62 59.7
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 4.2e-13 79.0 62 59.7
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 4.2e-13 79.0 105 45.7
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 5.5e-13 78.6 60 56.7
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 5.5e-13 78.6 68 54.4
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 5.5e-13 78.6 64 57.8
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 7.2e-13 78.2 63 57.1
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 7.2e-13 78.2 80 47.5
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 7.2e-13 78.2 60 60.0
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 9.4e-13 77.8 77 53.2
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 1.2e-12 77.4 91 45.1
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 2.1e-12 76.6 80 47.5
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 2.7e-12 76.3 83 48.2
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 2.7e-12 76.3 95 43.2
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 2.7e-12 76.3 83 54.2
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 3.6e-12 75.9 89 43.8
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 4.7e-12 75.5 80 46.2
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 8.0e-12 74.7 82 43.9
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 1.4e-11 73.9 73 52.1
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 3.0e-11 72.8 81 43.2
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 3.0e-11 72.8 56 60.7
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 4.0e-11 72.4 56 55.4
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 4.0e-11 72.4 115 39.1
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 6.8e-11 71.6 65 50.8
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 1.2e-10 70.9 79 44.3
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 2.0e-10 70.1 55 56.4
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 2.0e-10 70.1 55 56.4
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 2.6e-10 69.7 81 40.7
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 4.4e-10 68.9 61 50.8
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 7.5e-10 68.2 73 46.6
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.2e-09 66.6 52 59.6
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 2.8e-09 66.2 55 52.7
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.4e-08 63.9 50 58.0
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 1.4e-08 63.9 50 58.0
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 5.4e-08 62.0 90 38.9
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 7.0e-08 61.6 82 42.7
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.0e-07 60.1 78 41.0
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 2.7e-07 59.7 61 50.8
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 2.7e-07 59.7 61 50.8
CDE12G0350 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 1.0e-06 57.8 59 52.5
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.3e-06 56.6 94 38.3
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.3e-06 56.6 94 38.3
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.3e-06 56.6 78 37.2


User provided reference genes

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