Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 6.0e-61 237.3 116 100.0
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 1.3e-52 209.5 116 87.9
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 2.3e-52 208.8 116 87.1
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 3.0e-52 208.4 116 87.1
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 9.7e-51 203.4 116 85.3
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 9.7e-51 203.4 116 85.3
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 1.7e-47 192.6 116 76.7
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 8.5e-47 190.3 115 76.5
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 1.1e-46 189.9 116 76.7
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 1.4e-46 189.5 116 75.9
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 1.4e-46 189.5 116 75.9
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 1.9e-46 189.1 116 74.1
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 2.5e-46 188.7 116 76.7
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 2.5e-46 188.7 116 78.4
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 4.2e-46 188.0 116 74.1
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 5.5e-46 187.6 116 74.1
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 5.5e-46 187.6 116 74.1
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 7.2e-46 187.2 116 75.0
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 7.2e-46 187.2 116 75.0
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 9.4e-46 186.8 116 74.1
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 1.2e-45 186.4 114 75.4
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 1.2e-45 186.4 116 74.1
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 1.2e-45 186.4 116 75.9
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 1.2e-45 186.4 116 75.9
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 1.6e-45 186.0 116 73.3
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 1.6e-45 186.0 116 74.1
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 2.7e-45 185.3 116 73.3
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 2.7e-45 185.3 116 74.1
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 2.7e-45 185.3 116 75.9
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 2.7e-45 185.3 116 74.1
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 3.6e-45 184.9 116 74.1
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 3.6e-45 184.9 116 75.0
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 3.6e-45 184.9 116 72.4
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 4.6e-45 184.5 116 72.4
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 4.6e-45 184.5 116 75.0
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 6.1e-45 184.1 116 73.3
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 6.1e-45 184.1 116 73.3
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 6.1e-45 184.1 116 74.1
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 7.9e-45 183.7 117 74.4
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 7.9e-45 183.7 116 74.1
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 7.9e-45 183.7 116 73.3
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 7.9e-45 183.7 116 74.1
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 1.0e-44 183.3 116 75.9
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 1.4e-44 183.0 116 75.0
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 1.4e-44 183.0 116 73.3
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 1.4e-44 183.0 116 71.6
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 1.4e-44 183.0 116 71.6
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 1.8e-44 182.6 116 73.3
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 2.3e-44 182.2 118 77.1
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 2.3e-44 182.2 118 77.1
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 2.3e-44 182.2 116 71.6
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 2.3e-44 182.2 116 74.1
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 2.3e-44 182.2 116 72.4
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 3.0e-44 181.8 117 75.2
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 3.9e-44 181.4 117 75.2
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 3.9e-44 181.4 116 71.6
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 5.1e-44 181.0 116 72.4
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 5.1e-44 181.0 116 72.4
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 5.1e-44 181.0 116 72.4
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 6.7e-44 180.6 116 70.7
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 6.7e-44 180.6 116 72.4
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 6.7e-44 180.6 116 75.0
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 8.8e-44 180.3 116 72.4
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.1e-43 179.9 118 76.3
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 1.1e-43 179.9 116 71.6
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 1.5e-43 179.5 114 72.8
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 1.5e-43 179.5 116 70.7
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 2.0e-43 179.1 116 73.3
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 2.0e-43 179.1 116 73.3
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 2.0e-43 179.1 116 73.3
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 2.5e-43 178.7 117 72.6
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 3.3e-43 178.3 118 74.6
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 4.3e-43 177.9 116 69.0
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 4.3e-43 177.9 116 70.7
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 4.3e-43 177.9 117 72.6
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 5.7e-43 177.6 115 68.7
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 7.4e-43 177.2 116 71.6
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 7.4e-43 177.2 116 73.3
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 7.4e-43 177.2 114 69.3
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 1.7e-42 176.0 118 71.2
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 2.2e-42 175.6 117 72.6
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 2.2e-42 175.6 116 71.6
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 2.8e-42 175.3 116 67.2
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 3.7e-42 174.9 115 72.2
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 3.7e-42 174.9 116 69.8
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 3.7e-42 174.9 116 68.1
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 4.8e-42 174.5 110 72.7
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 6.3e-42 174.1 115 67.0
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 6.3e-42 174.1 118 72.0
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 1.1e-41 173.3 117 66.7
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 1.1e-41 173.3 116 69.0
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 1.4e-41 172.9 119 71.4
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 1.4e-41 172.9 119 71.4
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 1.4e-41 172.9 116 68.1
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 1.8e-41 172.6 114 69.3
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 1.8e-41 172.6 118 72.0
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 2.4e-41 172.2 118 72.9
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 4.1e-41 171.4 121 69.4
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 4.1e-41 171.4 119 70.6
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 4.1e-41 171.4 121 69.4
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 5.3e-41 171.0 117 70.9
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 5.3e-41 171.0 118 71.2
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 5.3e-41 171.0 118 72.0
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 5.3e-41 171.0 117 65.8
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 5.3e-41 171.0 117 68.4
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 6.9e-41 170.6 118 70.3
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 6.9e-41 170.6 116 69.0
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 1.2e-40 169.9 117 70.1
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 1.5e-40 169.5 122 66.4
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 1.5e-40 169.5 119 68.9
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 2.6e-40 168.7 116 68.1
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 2.6e-40 168.7 117 70.9
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 3.4e-40 168.3 118 68.6
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 3.4e-40 168.3 118 69.5
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 7.7e-40 167.2 118 69.5
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 7.7e-40 167.2 118 67.8
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 7.7e-40 167.2 105 71.4
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 1.0e-39 166.8 120 66.7
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 1.0e-39 166.8 120 66.7
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 1.0e-39 166.8 119 68.1
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 3.8e-39 164.9 118 67.8
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 3.8e-39 164.9 117 70.1
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 5.0e-39 164.5 118 66.1
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 1.1e-38 163.3 116 68.1
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 1.4e-38 162.9 120 65.0
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 1.9e-38 162.5 118 66.9
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 2.5e-38 162.2 118 69.5
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 2.5e-38 162.2 118 66.1
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 3.2e-38 161.8 118 66.1
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 3.2e-38 161.8 118 65.3
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 7.2e-38 160.6 116 62.1
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 3.6e-37 158.3 116 66.4
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 4.7e-37 157.9 108 64.8
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 4.7e-37 157.9 114 64.9
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 6.1e-37 157.5 88 84.1
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 6.1e-37 157.5 116 59.5
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 1.4e-36 156.4 118 63.6
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 1.8e-36 156.0 118 65.3
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 1.8e-36 156.0 108 63.0
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 5.1e-36 154.5 118 61.9
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 5.1e-36 154.5 116 61.2
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 1.1e-35 153.3 116 60.3
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.5e-35 152.9 109 61.5
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 2.6e-35 152.1 106 67.9
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 2.6e-35 152.1 116 60.3
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 4.4e-35 151.4 114 61.4
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 4.4e-35 151.4 114 61.4
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 5.7e-35 151.0 116 61.2
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 1.4e-33 146.4 114 59.6
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 3.1e-33 145.2 115 64.3
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 7.0e-33 144.1 115 60.9
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 2.0e-32 142.5 114 57.9
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.6e-32 142.1 109 60.6
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 1.2e-29 133.3 115 58.3
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 1.6e-29 132.9 106 59.4
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 8.2e-26 120.6 125 45.6
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 1.4e-25 119.8 115 48.7
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 1.6e-24 116.3 124 46.0
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.7e-23 112.8 115 48.7
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.9e-23 112.1 106 51.9
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 2.1e-21 105.9 116 50.0
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 1.2e-19 100.1 68 64.7
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 2.0e-19 99.4 125 41.6
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 4.8e-18 94.7 63 60.3
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 1.8e-17 92.8 68 60.3
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 9.1e-17 90.5 115 43.5
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.5e-14 83.2 57 59.6
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 1.8e-09 66.2 39 66.7


User provided reference genes

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