Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1964.5 1009 100.0
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1592.8 1017 80.8
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1521.1 1028 79.1
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1449.9 1012 77.0
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1420.2 1031 72.3
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1386.7 1021 70.0
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1380.2 1022 69.5
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1374.4 1017 69.1
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1372.5 1019 69.6
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1366.3 1013 68.7
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1353.6 1020 67.7
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1351.3 1018 67.6
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1349.7 1023 68.8
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1349.3 1044 67.0
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1349.3 1011 68.2
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1348.6 1020 68.5
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1347.8 1028 67.2
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1345.9 1026 67.3
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1345.5 1023 69.3
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1342.8 1033 67.0
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1342.8 1011 67.8
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1341.3 1041 66.3
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1340.5 1017 67.9
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1340.5 1029 67.3
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1340.1 1025 67.9
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1337.0 1023 67.2
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1334.7 1042 66.3
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1333.9 1045 65.5
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1333.2 1048 65.6
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1332.8 1023 67.9
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1330.9 1021 67.7
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1330.1 1014 69.0
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1326.6 1017 67.7
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1326.2 1029 66.3
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1325.8 1010 68.2
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1325.5 1020 67.3
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1323.1 1022 67.2
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1321.6 1013 67.6
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1320.1 1018 66.8
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1318.9 1016 67.0
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1318.1 1019 67.7
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1317.8 1039 67.7
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1317.4 1029 66.2
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1316.2 1029 66.1
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1316.2 1027 67.3
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1316.2 1021 67.7
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1311.2 1015 66.4
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1310.4 973 69.4
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1309.7 1021 66.9
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1307.7 1017 67.0
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1305.4 1032 66.3
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1304.3 1024 66.9
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1303.9 1017 67.6
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1300.8 1021 65.6
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1300.4 1014 67.0
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1299.3 1020 65.8
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1299.3 1060 64.6
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1299.3 1025 66.3
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1297.3 1013 66.3
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1295.8 1053 64.2
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1294.3 1028 65.0
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1293.5 1012 66.5
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1292.7 1020 65.6
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1290.8 1021 66.8
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1289.2 994 67.1
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1286.9 1024 66.1
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1285.4 1020 64.9
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1283.1 1016 64.9
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1283.1 1013 66.1
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1281.9 1022 64.7
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1278.8 1020 65.7
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1278.8 1019 65.4
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1278.5 1020 65.7
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1277.7 1019 65.5
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1276.9 1019 65.3
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1271.1 1080 61.7
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1267.7 1037 63.7
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1261.1 1118 60.9
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1258.0 1015 65.0
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1257.3 977 67.1
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1251.9 977 66.4
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1250.3 940 68.8
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1245.7 1017 64.7
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1241.9 1029 63.8
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1224.9 995 65.1
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1222.6 1020 63.9
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1213.7 1025 61.9
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1211.4 1019 62.4
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1199.5 1015 63.3
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1198.3 987 64.0
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1195.6 1024 60.7
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1195.3 1012 62.5
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1192.6 1013 62.6
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1190.3 1012 61.9
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1183.3 1005 62.4
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1182.2 1006 61.9
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1176.4 1015 60.5
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1174.1 1027 60.4
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1162.1 955 63.5
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1158.7 1023 60.0
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1143.6 1047 58.4
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1142.9 977 62.8
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1142.5 1002 59.6
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1140.9 1036 58.4
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1137.9 1013 59.4
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1120.5 1156 53.3
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1118.6 1041 57.3
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1105.5 1182 52.3
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1105.5 1010 58.7
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1103.2 925 62.2
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1097.4 1013 59.4
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1093.6 864 66.3
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1086.6 1011 57.2
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 3.7e-308 1061.6 1018 55.9
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 2.1e-306 1055.8 755 74.0
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 5.6e-304 1047.7 991 58.6
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 1.7e-300 1036.2 903 63.1
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 5.1e-297 1024.6 941 57.9
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 8.6e-297 1023.8 1019 55.1
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 1.5e-288 996.5 868 60.6
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 2.9e-284 982.2 951 56.6
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 1.4e-270 936.8 819 61.5
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 1.0e-252 877.5 872 56.1
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.4e-246 857.1 1043 47.7
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 1.5e-245 853.6 1034 48.7
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.4e-233 813.9 982 47.3
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 7.5e-232 808.1 633 65.9
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 1.1e-227 794.3 634 65.1
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 8.0e-218 761.5 1024 44.4
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 9.8e-216 754.6 1027 44.3
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 1.3e-215 754.2 633 61.8
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 8.3e-215 751.5 650 60.2
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 2.0e-200 703.7 1229 39.3
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.3e-196 691.0 876 43.8
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 7.6e-160 568.9 387 74.9
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 7.4e-155 552.4 354 77.4
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 8.4e-151 538.9 566 52.5
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 4.5e-136 490.0 391 67.3
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 2.3e-124 451.1 550 48.4
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 9.7e-123 445.7 498 53.8
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 4.5e-120 436.8 477 56.2
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 4.0e-100 370.5 205 82.0
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 8.3e-82 309.7 238 70.2
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 2.4e-81 308.1 308 55.8
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 3.6e-77 294.3 259 63.3
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 2.0e-75 288.5 150 88.7
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 3.7e-74 284.3 150 86.0
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 1.6e-72 278.9 858 28.9
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 3.5e-64 251.1 240 59.2
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 1.4e-57 229.2 174 59.8
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 6.0e-56 223.8 206 63.6
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 3.0e-47 194.9 114 76.3
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 6.4e-42 177.2 324 44.8
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.1e-41 173.7 90 83.3
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 2.7e-40 171.8 253 50.6
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 1.8e-36 159.1 511 28.0
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 5.8e-35 154.1 296 39.9
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 5.5e-33 147.5 123 70.7
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 1.9e-30 139.0 139 59.7
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 1.3e-29 136.3 77 80.5
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 5.3e-28 131.0 88 67.0
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 1.1e-25 123.2 132 56.1
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 2.2e-21 109.0 56 85.7
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 3.7e-21 108.2 83 65.1
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 4.1e-20 104.8 151 43.0
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 4.2e-17 94.7 112 42.9
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 4.2e-17 94.7 112 42.9
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 5.5e-17 94.4 80 55.0
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 1.2e-16 93.2 99 55.6
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 4.7e-16 91.3 58 81.0
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 3.3e-14 85.1 69 55.1
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 9.1e-12 77.0 56 64.3
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.7e-10 72.8 44 72.7
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 2.5e-09 68.9 80 46.2
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 6.1e-08 64.3 65 49.2


User provided reference genes

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