Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 2.3e-24 114.8 60 100.0
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 2.6e-15 84.7 57 82.5
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 1.6e-12 75.5 57 73.7
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 4.6e-12 73.9 57 70.2
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.0e-11 72.8 57 73.7
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 1.3e-11 72.4 57 70.2
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 1.3e-11 72.4 57 68.4
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.7e-11 72.0 57 73.7
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 1.7e-11 72.0 57 70.2
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 2.3e-11 71.6 57 71.9
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 3.0e-11 71.2 56 71.4
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 3.0e-11 71.2 57 68.4
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 5.1e-11 70.5 57 66.7
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 5.1e-11 70.5 57 68.4
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 5.1e-11 70.5 57 68.4
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 5.1e-11 70.5 57 68.4
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 6.6e-11 70.1 57 66.7
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 6.6e-11 70.1 57 66.7
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 8.6e-11 69.7 57 66.7
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 8.6e-11 69.7 57 68.4
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 8.6e-11 69.7 56 69.6
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 8.6e-11 69.7 57 66.7
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 8.6e-11 69.7 57 70.2
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 1.1e-10 69.3 57 66.7
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 1.1e-10 69.3 57 68.4
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 1.1e-10 69.3 57 68.4
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 1.1e-10 69.3 57 66.7
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 1.1e-10 69.3 57 66.7
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.5e-10 68.9 57 64.9
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.5e-10 68.9 56 71.4
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.9e-10 68.6 56 66.1
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 1.9e-10 68.6 57 64.9
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 1.9e-10 68.6 57 64.9
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 2.5e-10 68.2 57 64.9
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 3.3e-10 67.8 57 66.7
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 3.3e-10 67.8 57 64.9
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 4.3e-10 67.4 60 66.7
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 4.3e-10 67.4 57 63.2
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 4.3e-10 67.4 56 64.3
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 5.6e-10 67.0 57 63.2
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 5.6e-10 67.0 57 64.9
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 5.6e-10 67.0 55 63.6
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 5.6e-10 67.0 57 66.7
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 5.6e-10 67.0 55 63.6
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 7.3e-10 66.6 57 63.2
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 7.3e-10 66.6 57 63.2
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 9.5e-10 66.2 57 63.2
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 1.2e-09 65.9 57 63.2
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 1.2e-09 65.9 57 63.2
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.6e-09 65.5 57 61.4
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 2.1e-09 65.1 57 61.4
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 2.8e-09 64.7 57 64.9
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 2.8e-09 64.7 56 64.3
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 2.8e-09 64.7 57 61.4
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 2.8e-09 64.7 57 61.4
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 3.6e-09 64.3 56 62.5
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 3.6e-09 64.3 57 63.2
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 3.6e-09 64.3 57 63.2
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 3.6e-09 64.3 55 60.0
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 3.6e-09 64.3 55 60.0
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 3.6e-09 64.3 55 65.5
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 4.7e-09 63.9 56 62.5
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 4.7e-09 63.9 57 63.2
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 4.7e-09 63.9 56 60.7
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 4.7e-09 63.9 57 61.4
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 6.2e-09 63.5 54 61.1
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 6.2e-09 63.5 54 61.1
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 8.1e-09 63.2 56 67.9
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 1.1e-08 62.8 56 62.5
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 1.1e-08 62.8 56 62.5
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 1.1e-08 62.8 56 62.5
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 1.1e-08 62.8 56 62.5
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 1.1e-08 62.8 55 60.0
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 1.1e-08 62.8 55 63.6
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.1e-08 62.8 55 63.6
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.1e-08 62.8 55 63.6
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.1e-08 62.8 56 67.9
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 1.1e-08 62.8 56 67.9
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 1.1e-08 62.8 58 58.6
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.1e-08 62.8 56 64.3
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 1.4e-08 62.4 56 60.7
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 1.4e-08 62.4 57 59.6
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 1.4e-08 62.4 57 57.9
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 1.4e-08 62.4 60 56.7
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 1.8e-08 62.0 57 59.6
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 2.3e-08 61.6 56 60.7
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 2.3e-08 61.6 56 66.1
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 3.1e-08 61.2 56 60.7
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 3.1e-08 61.2 56 60.7
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 3.1e-08 61.2 55 63.6
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 3.1e-08 61.2 57 61.4
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 4.0e-08 60.8 56 64.3
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 5.2e-08 60.5 56 58.9
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 5.2e-08 60.5 56 58.9
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 5.2e-08 60.5 56 58.9
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 5.2e-08 60.5 56 58.9
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 5.2e-08 60.5 56 58.9
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 6.8e-08 60.1 54 61.1
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 6.8e-08 60.1 56 62.5
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 8.9e-08 59.7 54 57.4
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 8.9e-08 59.7 56 58.9
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 1.5e-07 58.9 51 62.7
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 1.5e-07 58.9 51 62.7
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 1.5e-07 58.9 51 62.7
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 2.0e-07 58.5 53 56.6
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 3.4e-07 57.8 52 61.5
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 3.4e-07 57.8 56 60.7
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 9.9e-07 56.2 52 61.5
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 1.3e-06 55.8 54 55.6
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 1.7e-06 55.5 50 60.0
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 6.4e-06 53.5 38 71.1
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 8.4e-06 53.1 56 51.8


User provided reference genes

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