Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01060 Beta vulgaris HOM05D006846 ORTHO05D008473 3.3e-77 291.6 143 100.0
AUR62027881 Chenopodium quinoa HOM05D006846 ORTHO05D008473 9.4e-56 220.3 140 77.9
AUR62019042 Chenopodium quinoa HOM05D006846 ORTHO05D008473 1.0e-54 216.9 141 77.3
Hund16859 Selenicereus undatus HOM05D006846 ORTHO05D008473 7.7e-50 200.7 137 72.3
Sc23g0000700 Simmondsia chinensis HOM05D006846 ORTHO05D008473 2.6e-45 185.7 137 67.9
Lj6A699T67 Lonicera japonica HOM05D006846 ORTHO05D008473 8.3e-44 180.6 121 70.2
Hma1.2p1_0013F.1_g007970 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 7.0e-43 177.6 116 72.4
GSVIVG01017604001 Vitis vinifera HOM05D006846 ORTHO05D008473 1.2e-42 176.8 126 67.5
GSVIVG01017661001 Vitis vinifera HOM05D006846 ORTHO05D008473 1.2e-42 176.8 126 67.5
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 3.5e-42 175.3 136 64.0
MSTRG.14213 Avicennia marina HOM05D006846 ORTHO05D008473 5.9e-42 174.5 123 68.3
Os12g0182800 Oryza sativa ssp. japonica HOM05D006846 ORTHO05D008473 7.7e-42 174.1 124 62.9
PSO339G5299 Papaver somniferum HOM05D006846 ORTHO05D008473 7.7e-42 174.1 130 66.9
Eucgr.H04110 Eucalyptus grandis HOM05D006846 ORTHO05D008473 1.7e-41 172.9 134 61.2
Ciclev10007018m.g Citrus clementina HOM05D006846 ORTHO05D008473 2.3e-41 172.6 121 67.8
Gohir.D09G242700 Gossypium hirsutum HOM05D006846 ORTHO05D008473 2.9e-41 172.2 119 69.7
Gorai.006G266400 Gossypium raimondii HOM05D006846 ORTHO05D008473 2.9e-41 172.2 119 69.7
Prupe.1G108100 Prunus persica HOM05D006846 ORTHO05D008473 3.8e-41 171.8 121 68.6
Thecc.04G310600 Theobroma cacao HOM05D006846 ORTHO05D008473 6.5e-41 171.0 133 62.4
MELO3C003207.2 Cucumis melo HOM05D006846 ORTHO05D008473 1.5e-40 169.9 119 65.5
Migut.H02019 Erythranthe guttata HOM05D006846 ORTHO05D008473 1.5e-40 169.9 118 66.1
Nitab4.5_0007474g0050 Nicotiana tabacum HOM05D006846 ORTHO05D008473 1.9e-40 169.5 138 61.6
PSO384G1587 Papaver somniferum HOM05D006846 ORTHO05D008473 2.5e-40 169.1 130 64.6
Manes.03G210800 Manihot esculenta HOM05D006846 ORTHO05D008473 3.3e-40 168.7 135 60.0
Nitab4.5_0007368g0030 Nicotiana tabacum HOM05D006846 ORTHO05D008473 4.2e-40 168.3 138 60.9
QL06p041421 Quercus lobata HOM05D006846 ORTHO05D008473 4.2e-40 168.3 137 59.1
Zm00001eb359370 Zea mays HOM05D006846 ORTHO05D008473 4.2e-40 168.3 127 61.4
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 5.5e-40 167.9 130 65.4
Potri.008G099700 Populus trichocarpa HOM05D006846 ORTHO05D008473 5.5e-40 167.9 135 62.2
SGA_v2.0_scaffold127G34033 Striga asiatica HOM05D006846 ORTHO05D008473 5.5e-40 167.9 135 61.5
FvH4_4g21260 Fragaria vesca HOM05D006846 ORTHO05D008473 7.2e-40 167.5 122 67.2
FAN07G1325 Fragaria x ananassa HOM05D006846 ORTHO05D008473 7.2e-40 167.5 122 67.2
RcHm_v2.0_Chr4g0426881 Rosa chinensis HOM05D006846 ORTHO05D008473 7.2e-40 167.5 122 68.0
Lalb_Chr07g0181811 Lupinus albus HOM05D006846 ORTHO05D008473 9.5e-40 167.2 131 64.1
AT1G48170 Arabidopsis thaliana HOM05D006846 ORTHO05D008473 1.2e-39 166.8 129 64.3
Duzib212G0339 Durio zibethinus HOM05D006846 ORTHO05D008473 1.6e-39 166.4 128 64.1
Carub.0005s0005 Capsella rubella HOM05D006846 ORTHO05D008473 2.1e-39 166.0 123 64.2
CsaV3_4G025810 Cucumis sativus L. HOM05D006846 ORTHO05D008473 2.1e-39 166.0 115 67.0
CDE12G0609 Ceratophyllum demersum HOM05D006846 ORTHO05D008473 3.6e-39 165.2 128 60.9
MD13G1143600 Malus domestica HOM05D006846 ORTHO05D008473 3.6e-39 165.2 118 69.5
CiPaw.01G161800 Carya illinoinensis HOM05D006846 ORTHO05D008473 4.7e-39 164.9 126 65.1
Sed0003831 Sechium edule HOM05D006846 ORTHO05D008473 4.7e-39 164.9 119 66.4
SGA_v2.0_scaffold64G22040 Striga asiatica HOM05D006846 ORTHO05D008473 6.1e-39 164.5 156 55.8
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 8.0e-39 164.1 127 62.2
Peaxi162Scf00579g00010 Petunia axillaris HOM05D006846 ORTHO05D008473 8.0e-39 164.1 121 62.0
Solyc06g053470.3 Solanum lycopersicum HOM05D006846 ORTHO05D008473 8.0e-39 164.1 135 60.0
Sopen06g018550 Solanum pennellii HOM05D006846 ORTHO05D008473 8.0e-39 164.1 135 60.0
PGSC0003DMG400016299 Solanum tuberosum HOM05D006846 ORTHO05D008473 8.0e-39 164.1 135 60.0
Medtr2g046100 Medicago truncatula HOM05D006846 ORTHO05D008473 1.8e-38 162.9 139 59.7
Sp3g23740 Schrenkiella parvula HOM05D006846 ORTHO05D008473 2.3e-38 162.5 119 65.5
Phvul.009G219800 Phaseolus vulgaris HOM05D006846 ORTHO05D008473 3.0e-38 162.2 117 67.5
SEGI_09291 Sequoiadendron giganteum HOM05D006846 ORTHO05D008473 3.0e-38 162.2 122 61.5
Sabra08G0075400 Salix brachista HOM05D006846 ORTHO05D008473 4.0e-38 161.8 143 58.7
AL1G54740 Arabidopsis lyrata HOM05D006846 ORTHO05D008473 5.2e-38 161.4 121 65.3
CAN.G136.4 Capsicum annuum HOM05D006846 ORTHO05D008473 1.2e-37 160.2 119 63.9
CARHR290870 Cardamine hirsuta HOM05D006846 ORTHO05D008473 1.2e-37 160.2 114 67.5
Lj6g0016026 Lotus japonicus HOM05D006846 ORTHO05D008473 1.2e-37 160.2 115 66.1
BcaC08g43012 Brassica carinata HOM05D006846 ORTHO05D008473 1.5e-37 159.8 131 59.5
C06p02670 Brassica napus HOM05D006846 ORTHO05D008473 1.5e-37 159.8 131 59.5
PGR004G1594 Punica granatum HOM05D006846 ORTHO05D008473 1.5e-37 159.8 124 61.3
PGR033G0007 Punica granatum HOM05D006846 ORTHO05D008473 1.5e-37 159.8 124 61.3
CARHR037810 Cardamine hirsuta HOM05D006846 ORTHO05D008473 2.6e-37 159.1 122 62.3
BolC6t35393H Brassica oleracea HOM05D006846 ORTHO05D008473 3.4e-37 158.7 131 58.8
Rhsim04G0247300 Rhododendron simsii HOM05D006846 ORTHO05D008473 3.4e-37 158.7 139 57.6
HanXRQChr09g0246471 Helianthus annuus HOM05D006846 ORTHO05D008473 5.7e-37 157.9 123 60.2
VMungo1309G3101 Vigna mungo HOM05D006846 ORTHO05D008473 5.7e-37 157.9 117 66.7
Aqoxy1G00358 Aquilegia oxysepala HOM05D006846 ORTHO05D008473 7.5e-37 157.5 126 60.3
SGA_v2.0_scaffold127G34034 Striga asiatica HOM05D006846 ORTHO05D008473 7.5e-37 157.5 138 59.4
BcaB07g33786 Brassica carinata HOM05D006846 ORTHO05D008473 9.8e-37 157.1 122 62.3
A06p04640 Brassica napus HOM05D006846 ORTHO05D008473 9.8e-37 157.1 124 62.1
BraA06t23668Z Brassica rapa HOM05D006846 ORTHO05D008473 9.8e-37 157.1 124 62.1
Thhalv10012405m.g Eutrema salsugineum HOM05D006846 ORTHO05D008473 9.8e-37 157.1 112 66.1
Psat1g017720 Pisum sativum HOM05D006846 ORTHO05D008473 9.8e-37 157.1 143 56.6
Aa31LG10G5560 Aethionema arabicum HOM05D006846 ORTHO05D008473 1.7e-36 156.4 119 64.7
Glyma.15G188800 Glycine max HOM05D006846 ORTHO05D008473 2.8e-36 155.6 117 65.8
THA.LOC104821808 Tarenaya hassleriana HOM05D006846 ORTHO05D008473 2.8e-36 155.6 120 62.5
Cfa015953 Carpinus fangiana HOM05D006846 ORTHO05D008473 4.9e-36 154.8 121 65.3
ECA233G5003 Erigeron canadensis HOM05D006846 ORTHO05D008473 6.3e-36 154.5 113 64.6
FAN12G0803 Fragaria x ananassa HOM05D006846 ORTHO05D008473 8.3e-36 154.1 147 55.8
Ca_02363_v3 Cicer arietinum L. HOM05D006846 ORTHO05D008473 1.4e-35 153.3 115 65.2
vmacro08003 Vaccinium macrocarpon HOM05D006846 ORTHO05D008473 1.4e-35 153.3 181 47.0
Dinv29523 Davidia involucrata HOM05D006846 ORTHO05D008473 5.4e-35 151.4 113 61.9
CANSAT01G2167 Cannabis sativa HOM05D006846 ORTHO05D008473 2.0e-34 149.4 123 60.2
unitig_744.g24645 Utricularia gibba HOM05D006846 ORTHO05D008473 1.7e-33 146.4 121 62.0
arahy.Tifrunner.gnm1.ann1.BIT0EB Arachis hypogaea HOM05D006846 ORTHO05D008473 2.3e-33 146.0 109 63.3
SalBow8G5328 Salvia bowleyana HOM05D006846 ORTHO05D008473 9.5e-32 140.6 152 50.0
COL.COLO4_34545 Corchorus olitorius HOM05D005582 ORTHO05D007028 1.6e-31 139.8 90 72.2
Cc03_g00240 Coffea canephora HOM05D006846 ORTHO05D008473 2.1e-31 139.4 91 68.1
TWI73G0996 Tripterygium wilfordii HOM05D006846 ORTHO05D008473 3.0e-30 135.6 113 60.2
Pp3c9_17660 Physcomitrium patens HOM05D006846 ORTHO05D008473 1.7e-28 129.8 120 51.7
Dinv29521 Davidia involucrata HOM05D006846 ORTHO05D008473 8.3e-28 127.5 102 59.8
TPR.G27493 Trifolium pratense HOM05D006846 ORTHO05D008473 1.8e-27 126.3 117 49.6
Gohir.A09G242000 Gossypium hirsutum HOM05D006846 ORTHO05D008473 2.0e-26 122.9 126 53.2
HPP92_004479 Vanilla planifolia HOM05D006846 ORTHO05D008473 2.0e-26 122.9 100 57.0
MD16G1146600 Malus domestica HOM05D006846 ORTHO05D008473 2.7e-26 122.5 119 53.8
Haze_00535 Corylus avellana HOM05D006846 ORTHO05D008473 4.6e-26 121.7 121 54.5
Mapoly0021s0070 Marchantia polymorpha HOM05D006846 ORTHO05D008473 1.7e-25 119.8 122 47.5
Nn4g26496 Nelumbo nucifera HOM05D006846 ORTHO05D008473 3.0e-25 119.0 132 49.2
Lsat_1_v5_gn_6_71441 Lactuca sativa HOM05D006846 ORTHO05D008473 8.6e-25 117.5 126 48.4
MBI18_g09611_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 1.9e-24 116.3 99 57.6
QL11p040346 Quercus lobata HOM05D006846 ORTHO05D008473 4.3e-24 115.2 125 48.8
Haze_00536 Corylus avellana HOM05D006846 ORTHO05D008473 7.3e-24 114.4 138 48.6
CSS0050245 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 4.0e-22 108.6 68 75.0
TAR365G0638 Trochodendron aralioides HOM05D006846 ORTHO05D008473 5.4e-19 98.2 76 63.2
arahy.Tifrunner.gnm1.ann1.EYUN0W Arachis hypogaea HOM05D000385 ORTHO05D000269 3.5e-18 95.5 109 46.8
ATR0693G432 Amborella trichopoda HOM05D006846 ORTHO05D008473 6.0e-18 94.7 76 55.3
ClCG04G007450 Citrullus lanatus HOM05D006846 ORTHO05D008473 1.0e-17 94.0 71 63.4
Glyma.09G078800 Glycine max HOM05D006846 ORTHO05D008473 5.0e-17 91.7 62 72.6
CSS0047848 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 4.3e-16 88.6 54 74.1
Cpa.g.sc146.38 Carica papaya HOM05D006846 ORTHO05D008473 3.1e-14 82.4 75 58.7
Hma1.2p1_0013F.1_g007960 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 9.9e-13 77.4 50 70.0
Zm00001eb158200 Zea mays HOM05D006846 ORTHO05D008473 3.2e-11 72.4 62 48.4
MBI19_g16347_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 5.4e-11 71.6 94 47.9
Cre04.g216300 Chlamydomonas reinhardtii HOM05D006846 ORTHO05D008473 7.8e-10 67.8 102 31.4
AagrBONN_evm.TU.Sc2ySwM_117.777 Anthoceros agrestis HOM05D006846 ORTHO05D008473 7.3e-08 61.2 60 45.0


User provided reference genes

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