Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 1.2e-214 749.6 369 100.0
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 9.2e-180 633.6 369 84.3
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 5.4e-148 528.1 369 72.6
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 3.1e-143 512.3 360 73.6
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 9.9e-142 507.3 386 66.8
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 2.5e-140 502.7 373 67.8
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 7.9e-139 497.7 373 64.9
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 2.5e-137 492.7 372 66.1
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 3.7e-136 488.8 373 67.3
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 1.8e-135 486.5 372 67.5
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 2.4e-135 486.1 372 66.1
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 1.5e-134 483.4 372 65.1
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 4.5e-134 481.9 374 63.6
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 4.5e-134 481.9 373 65.1
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 2.9e-133 479.2 374 65.0
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 3.8e-133 478.8 372 64.8
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 4.9e-133 478.4 357 66.4
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 8.4e-133 477.6 371 65.0
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 3.2e-132 475.7 372 63.4
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.1e-131 473.0 369 64.8
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 2.7e-131 472.6 369 65.0
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 3.5e-131 472.2 373 63.5
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 4.6e-131 471.9 372 63.7
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 4.6e-131 471.9 372 64.2
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 6.0e-131 471.5 374 62.8
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.8e-130 469.9 375 63.7
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 3.0e-130 469.2 373 64.3
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 1.1e-129 467.2 375 63.5
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 3.7e-128 462.2 375 63.5
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 3.7e-128 462.2 372 62.6
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 8.2e-128 461.1 372 61.3
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 8.2e-128 461.1 372 61.6
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 4.1e-127 458.8 380 62.9
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 5.9e-126 454.9 374 62.0
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 1.0e-125 454.1 372 61.3
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 3.8e-125 452.2 378 59.5
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 1.9e-124 449.9 374 62.8
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 4.2e-124 448.7 372 62.1
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 5.5e-124 448.4 371 61.7
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 7.2e-124 448.0 372 61.0
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.6e-123 445.7 372 59.1
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 4.6e-123 445.3 372 58.3
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 6.1e-123 444.9 373 59.0
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 6.1e-123 444.9 375 61.9
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 2.3e-122 443.0 371 60.1
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 2.3e-122 443.0 371 62.0
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 3.9e-122 442.2 372 60.8
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.1e-121 440.7 369 59.6
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.1e-121 440.7 369 59.6
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 1.3e-120 437.2 375 59.7
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 1.7e-120 436.8 373 57.6
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 1.7e-120 436.8 376 59.0
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 1.7e-120 436.8 373 59.2
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 1.4e-119 433.7 373 58.4
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 1.8e-119 433.3 369 59.3
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 3.1e-119 432.6 369 60.4
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 1.2e-118 430.6 373 58.7
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 3.4e-118 429.1 364 58.5
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 2.2e-117 426.4 371 59.8
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 2.9e-117 426.0 370 60.8
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 5.0e-117 425.2 371 59.8
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 1.1e-116 424.1 413 55.0
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 2.7e-115 419.5 359 59.6
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 3.0e-114 416.0 350 59.7
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 3.9e-114 415.6 371 59.0
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 3.9e-114 415.6 374 56.4
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 6.7e-114 414.8 357 61.6
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 3.3e-113 412.5 352 60.8
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 1.7e-112 410.2 377 58.1
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 2.2e-112 409.8 372 57.8
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 2.8e-112 409.5 374 57.0
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 1.4e-111 407.1 377 57.8
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 1.4e-111 407.1 371 58.0
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 1.8e-111 406.8 376 56.1
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 1.8e-111 406.8 332 63.3
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 2.4e-111 406.4 383 55.9
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 2.4e-111 406.4 380 56.6
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 5.3e-111 405.2 379 56.5
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 5.3e-111 405.2 376 56.9
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 7.0e-111 404.8 377 57.0
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 7.0e-111 404.8 404 53.7
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 9.1e-111 404.4 378 56.6
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 1.5e-110 403.7 378 56.6
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 2.0e-110 403.3 379 56.5
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 2.6e-110 402.9 376 56.4
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 3.5e-110 402.5 377 56.0
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 7.7e-110 401.4 375 56.8
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 1.0e-109 401.0 377 56.5
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 1.7e-109 400.2 349 60.2
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 8.5e-109 397.9 348 60.6
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 1.1e-108 397.5 350 59.1
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 1.9e-108 396.7 343 59.2
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 7.2e-108 394.8 376 54.5
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 7.2e-108 394.8 373 57.9
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 9.4e-108 394.4 377 56.2
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 1.6e-107 393.7 383 53.5
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 1.4e-106 390.6 353 57.5
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 1.8e-106 390.2 376 53.2
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 3.0e-106 389.4 326 61.3
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 9.7e-105 384.4 331 58.3
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 9.7e-105 384.4 349 58.2
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 6.3e-104 381.7 322 57.1
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 8.2e-104 381.3 372 50.8
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 8.2e-104 381.3 374 54.8
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 5.0e-101 372.1 298 62.1
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 3.2e-100 369.4 356 55.6
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 8.0e-99 364.8 341 55.4
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.0e-98 364.4 372 48.7
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 5.2e-98 362.1 372 48.7
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 8.8e-98 361.3 374 50.3
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.5e-97 360.5 372 50.0
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 2.0e-97 360.1 369 53.4
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 3.4e-97 359.4 323 55.4
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 8.3e-96 354.8 372 52.4
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.1e-95 354.4 396 48.5
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 1.5e-92 344.0 387 48.6
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 8.0e-91 338.2 348 49.7
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 5.7e-89 332.0 372 49.7
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 5.4e-87 325.5 299 55.5
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.5e-84 317.4 373 47.5
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 2.4e-79 300.1 384 43.8
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 1.6e-78 297.4 346 47.1
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 4.3e-76 289.3 477 38.4
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 1.8e-74 283.9 403 40.7
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 4.9e-72 275.8 298 52.3
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 2.4e-71 273.5 233 58.8
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.2e-70 271.2 242 57.4
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 1.0e-69 268.1 299 49.5
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 3.6e-67 259.6 275 49.8
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 6.2e-67 258.8 383 38.4
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 9.8e-65 251.5 234 56.0
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 9.8e-65 251.5 289 47.1
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 1.3e-64 251.1 260 51.5
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.1e-59 233.8 242 52.5
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 2.3e-58 230.3 385 35.1
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 4.1e-55 219.5 343 37.0
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.2e-54 218.0 200 54.0
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.9e-52 210.7 249 47.0
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.4e-50 204.5 262 42.7
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.4e-50 203.8 214 52.3
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.9e-44 184.1 138 63.0
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.6e-43 181.0 383 31.9
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 3.1e-42 176.8 153 58.8
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.9e-40 170.2 116 70.7
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 4.8e-27 126.3 427 25.1
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 2.0e-25 120.9 73 78.1
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 3.5e-22 110.2 140 47.1
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 3.9e-21 106.7 243 27.6
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 6.2e-19 99.4 91 52.7
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 4.5e-17 93.2 121 43.0
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 1.0e-13 82.0 42 90.5
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 1.1e-12 78.6 74 58.1
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 6.5e-08 62.8 48 64.6
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.2e-06 58.5 78 42.3


User provided reference genes

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