Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 8.3e-285 983.0 495 100.0
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 6.5e-221 770.8 495 78.0
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 6.5e-221 770.8 495 78.2
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 7.4e-201 704.1 495 70.3
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 2.0e-185 652.9 497 67.2
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 1.4e-154 550.4 496 56.9
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 3.7e-152 542.3 499 57.1
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 8.3e-152 541.2 496 56.0
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 9.2e-151 537.7 499 57.1
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 1.3e-149 533.9 498 55.4
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 2.3e-149 533.1 497 55.7
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 8.6e-149 531.2 491 56.6
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 2.5e-148 529.6 498 55.8
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 3.3e-148 529.3 483 56.7
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 5.6e-148 528.5 499 55.3
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 5.6e-148 528.5 496 55.4
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.1e-147 526.6 498 54.2
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 2.1e-147 526.6 482 55.0
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.7e-147 525.4 498 54.0
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 8.1e-147 524.6 499 54.1
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 1.1e-146 524.2 490 55.1
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 1.1e-146 524.2 498 54.2
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 1.8e-146 523.5 479 57.4
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 4.0e-146 522.3 490 55.7
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 1.2e-145 520.8 495 54.1
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.5e-145 520.4 496 54.0
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 2.0e-145 520.0 493 54.6
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 3.4e-145 519.2 477 57.0
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 7.6e-145 518.1 491 54.4
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 7.6e-145 518.1 498 53.4
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 1.3e-144 517.3 486 56.2
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 2.2e-144 516.5 496 53.8
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 2.2e-144 516.5 501 54.5
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.9e-144 516.2 496 53.8
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 8.4e-144 514.6 494 53.6
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 1.9e-143 513.5 486 52.7
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 1.9e-143 513.5 496 52.2
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 2.4e-143 513.1 490 52.9
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 2.4e-143 513.1 490 52.9
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 7.1e-143 511.5 491 53.2
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 9.2e-143 511.1 487 53.2
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 2.1e-142 510.0 498 52.2
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 2.7e-142 509.6 486 53.1
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 5.1e-141 505.4 498 51.8
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 5.1e-141 505.4 490 53.3
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 2.5e-140 503.1 492 53.0
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 7.3e-140 501.5 487 53.2
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 1.2e-139 500.7 503 51.9
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 2.1e-139 500.0 497 52.1
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 2.8e-139 499.6 497 52.3
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.4e-138 497.3 492 52.4
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 1.3e-136 490.7 490 52.2
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 6.4e-136 488.4 497 51.7
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 8.4e-136 488.0 492 52.2
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 1.4e-135 487.3 489 53.2
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 2.4e-135 486.5 501 50.1
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 4.2e-135 485.7 495 50.7
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 1.2e-134 484.2 495 50.5
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 1.6e-134 483.8 490 52.0
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 2.7e-134 483.0 488 50.6
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 5.1e-133 478.8 482 50.6
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 6.6e-133 478.4 484 52.5
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 8.7e-133 478.0 486 50.8
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 1.5e-132 477.2 491 50.7
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 1.9e-132 476.9 495 51.5
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 1.3e-131 474.2 479 51.1
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 3.6e-131 472.6 491 51.1
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 6.2e-131 471.9 485 50.3
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.4e-130 470.7 494 49.4
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 2.4e-130 469.9 411 60.3
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 3.1e-130 469.5 492 49.4
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 4.0e-130 469.2 485 50.7
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 4.0e-130 469.2 499 47.5
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 5.8e-129 465.3 492 50.6
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 1.7e-128 463.8 484 49.2
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 4.9e-128 462.2 494 49.0
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 4.9e-128 462.2 495 49.1
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 4.9e-128 462.2 486 49.4
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 8.4e-128 461.5 485 50.3
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 1.9e-127 460.3 493 47.9
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 9.3e-127 458.0 373 62.5
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.6e-126 457.2 497 48.3
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 2.1e-126 456.8 491 48.5
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 6.0e-126 455.3 489 49.1
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.8e-125 453.8 482 48.8
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 3.0e-125 453.0 491 47.9
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 6.7e-125 451.8 491 47.5
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 3.3e-124 449.5 494 47.4
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 4.3e-124 449.1 493 48.9
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 3.7e-123 446.0 489 48.9
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 4.8e-123 445.7 495 48.1
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 8.1e-123 444.9 493 48.3
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 1.1e-122 444.5 489 48.1
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 4.0e-122 442.6 494 49.2
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 3.4e-121 439.5 482 48.3
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 2.9e-120 436.4 544 44.3
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 1.4e-119 434.1 423 52.2
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.9e-119 433.7 486 48.4
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 4.2e-119 432.6 493 48.5
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 1.6e-118 430.6 490 48.2
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 8.7e-117 424.9 498 48.4
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 4.3e-116 422.5 374 55.9
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 3.7e-115 419.5 492 45.9
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 8.2e-115 418.3 487 47.0
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 1.4e-114 417.5 491 46.2
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 1.4e-114 417.5 482 49.4
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 4.5e-113 412.5 467 47.5
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 5.7e-108 395.6 384 53.1
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.1e-106 391.3 486 46.1
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 4.8e-99 365.9 435 45.1
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 4.7e-94 349.4 527 37.0
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 7.9e-94 348.6 416 45.7
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 1.0e-93 348.2 471 44.8
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 8.2e-91 338.6 472 43.0
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 5.0e-88 329.3 291 54.0
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 3.6e-86 323.2 490 37.1
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 8.0e-86 322.0 291 54.0
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 6.7e-85 318.9 292 52.7
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 8.8e-85 318.5 378 47.4
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 9.7e-84 315.1 330 50.0
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 9.7e-84 315.1 514 38.5
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.0e-77 293.1 496 37.7
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 9.7e-76 288.5 254 54.7
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 4.1e-74 283.1 362 47.2
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.3e-69 267.3 426 36.6
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 7.5e-68 262.3 356 43.0
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 7.0e-66 255.8 477 36.1
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 1.0e-64 251.9 414 37.2
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 1.6e-62 244.6 314 43.0
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 4.7e-62 243.0 383 38.4
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 1.0e-61 241.9 292 45.5
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 6.8e-61 239.2 594 31.1
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 8.9e-61 238.8 293 43.7
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 8.9e-61 238.8 538 31.2
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 5.4e-58 229.6 491 33.2
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 1.2e-57 228.4 485 34.2
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.2e-57 228.4 373 34.0
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 2.9e-56 223.8 475 33.3
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 2.9e-56 223.8 185 62.2
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 6.1e-54 216.1 250 46.4
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 5.2e-53 213.0 187 57.8
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 6.8e-53 212.6 651 28.0
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 6.8e-53 212.6 257 47.9
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 3.7e-51 206.8 154 60.4
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 4.9e-51 206.5 226 48.7
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 4.6e-49 199.9 431 32.5
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.0e-48 198.7 477 29.8
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 1.5e-47 194.9 173 54.9
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 3.7e-43 180.3 278 40.3
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 8.9e-37 159.1 453 28.3
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 1.2e-36 158.7 260 39.2
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 3.7e-35 153.7 255 37.3
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 4.9e-35 153.3 192 43.2
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 1.9e-34 151.4 480 26.7
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 9.2e-34 149.1 363 30.6
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 8.6e-32 142.5 95 67.4
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 1.4e-29 135.2 128 55.5
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 1.8e-29 134.8 146 47.3
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.2e-27 127.9 97 63.9
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 1.3e-24 118.6 163 38.7
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 3.0e-24 117.5 307 31.6
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 1.1e-23 115.5 129 44.2
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 1.5e-23 115.2 122 47.5
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 7.3e-23 112.8 116 51.7
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 5.3e-21 106.7 139 42.4
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 8.4e-19 99.4 110 50.0
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 1.5e-15 88.6 130 36.9
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 4.8e-14 83.6 146 34.9
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 7.6e-12 76.3 172 26.2
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.9e-10 71.6 72 47.2


User provided reference genes

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