Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00937 Beta vulgaris HOM05D006822 ORTHO05D008884 0.0e+00 1170.6 683 100.0
Ah.05g175170 Amaranthus hybridus HOM05D006822 ORTHO05D008884 4.7e-246 854.7 696 72.0
AUR62004233 Chenopodium quinoa HOM05D006822 ORTHO05D008884 4.9e-235 818.1 698 66.9
AUR62013615 Chenopodium quinoa HOM05D006822 ORTHO05D008884 4.6e-233 811.6 690 67.4
Hund27354 Selenicereus undatus HOM05D006822 ORTHO05D008884 2.4e-202 709.5 700 61.0
Sc23g0003500 Simmondsia chinensis HOM05D006822 ORTHO05D008884 6.3e-182 641.7 710 58.6
GSVIVG01027532001 Vitis vinifera HOM05D006822 ORTHO05D008884 6.9e-181 638.3 687 58.8
Manes.01G264800 Manihot esculenta HOM05D006822 ORTHO05D008884 5.5e-178 628.6 691 58.3
Ciclev10019178m.g Citrus clementina HOM05D006822 ORTHO05D008884 2.3e-176 623.2 688 57.1
CiPaw.01G260400 Carya illinoinensis HOM05D006822 ORTHO05D008884 8.7e-176 621.3 693 54.8
Rhsim07G0025500 Rhododendron simsii HOM05D006822 ORTHO05D008884 2.8e-174 616.3 688 55.5
Atru.chr5.328 Acer truncatum HOM05D006822 ORTHO05D008884 1.1e-173 614.4 686 54.7
Cfa001701 Carpinus fangiana HOM05D006822 ORTHO05D008884 1.1e-173 614.4 684 55.3
TAR375G1023 Trochodendron aralioides HOM05D006822 ORTHO05D008884 4.1e-173 612.5 688 54.4
Haze_16833 Corylus avellana HOM05D006822 ORTHO05D008884 5.3e-173 612.1 694 56.1
vmacro13383 Vaccinium macrocarpon HOM05D006822 ORTHO05D008884 1.5e-172 610.5 697 52.5
Hma1.2p1_0053F.1_g030830 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 5.5e-170 602.1 687 52.1
Thecc.01G374100 Theobroma cacao HOM05D006822 ORTHO05D008884 5.5e-170 602.1 690 55.4
Duzib133G0703 Durio zibethinus HOM05D006822 ORTHO05D008884 2.7e-169 599.7 689 57.9
Lj7A526T89 Lonicera japonica HOM05D006822 ORTHO05D008884 1.8e-168 597.0 676 57.8
ClCG05G002100 Citrullus lanatus HOM05D006822 ORTHO05D008884 6.7e-168 595.1 685 55.0
CAN.G170.5 Capsicum annuum HOM05D006822 ORTHO05D008884 7.4e-167 591.7 675 54.7
CSS0016394 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 2.8e-166 589.7 677 57.8
CsaV3_3G009540 Cucumis sativus L. HOM05D006822 ORTHO05D008884 1.1e-165 587.8 683 57.0
Nitab4.5_0004320g0040 Nicotiana tabacum HOM05D006822 ORTHO05D008884 2.4e-165 586.6 670 54.5
Gohir.A08G031700 Gossypium hirsutum HOM05D006822 ORTHO05D008884 4.1e-165 585.9 693 56.6
QL08p051944 Quercus lobata HOM05D006822 ORTHO05D008884 2.0e-164 583.6 682 57.9
Oeu003493.1 Olea europaea HOM05D006822 ORTHO05D008884 1.3e-163 580.9 705 55.6
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 2.2e-163 580.1 673 56.3
Glyma.09G267800 Glycine max HOM05D006822 ORTHO05D008884 1.1e-162 577.8 687 52.0
Gorai.004G041400 Gossypium raimondii HOM05D006822 ORTHO05D008884 1.4e-162 577.4 692 55.2
Gohir.D08G042800 Gossypium hirsutum HOM05D006822 ORTHO05D008884 1.9e-162 577.0 679 56.0
MELO3C006175.2 Cucumis melo HOM05D006822 ORTHO05D008884 2.5e-162 576.6 684 56.6
PGSC0003DMG401012750 Solanum tuberosum HOM05D006822 ORTHO05D008884 2.5e-162 576.6 686 53.8
Cpa.g.sc18.138 Carica papaya HOM05D006822 ORTHO05D008884 5.5e-162 575.5 687 54.0
MD02G1201200 Malus domestica HOM05D006822 ORTHO05D008884 9.4e-162 574.7 687 54.4
CANSAT56G1004 Cannabis sativa HOM05D006822 ORTHO05D008884 3.6e-161 572.8 693 56.1
Ca_07832_v3 Cicer arietinum L. HOM05D006822 ORTHO05D008884 8.0e-161 571.6 693 54.0
Potri.002G149800 Populus trichocarpa HOM05D006822 ORTHO05D008884 1.4e-160 570.9 697 53.1
Aqoxy7G00564 Aquilegia oxysepala HOM05D006822 ORTHO05D008884 2.3e-160 570.1 693 53.2
Lj1g0013249 Lotus japonicus HOM05D006822 ORTHO05D008884 2.3e-160 570.1 689 52.4
HanXRQChr04g0122211 Helianthus annuus HOM05D006822 ORTHO05D008884 7.4e-159 565.1 675 54.7
Sed0020963 Sechium edule HOM05D006822 ORTHO05D008884 2.8e-158 563.1 680 55.6
TWI14G1233 Tripterygium wilfordii HOM05D006822 ORTHO05D008884 2.8e-158 563.1 686 55.2
Solyc01g091510.4 Solanum lycopersicum HOM05D006822 ORTHO05D008884 3.7e-158 562.8 684 53.1
Sopen01g037280 Solanum pennellii HOM05D006822 ORTHO05D008884 6.3e-158 562.0 684 53.1
Lalb_Chr01g0021331 Lupinus albus HOM05D006822 ORTHO05D008884 1.1e-157 561.2 676 48.4
Cc02_g36520 Coffea canephora HOM05D006822 ORTHO05D008884 7.0e-157 558.5 691 54.8
Glyma.18G222100 Glycine max HOM05D006822 ORTHO05D008884 9.1e-157 558.1 688 51.5
Peaxi162Scf00021g01312 Petunia axillaris HOM05D006822 ORTHO05D008884 1.2e-156 557.8 736 49.7
PSO478G2587 Papaver somniferum HOM05D006822 ORTHO05D008884 3.5e-156 556.2 680 51.0
Migut.B01651 Erythranthe guttata HOM05D006822 ORTHO05D008884 5.0e-155 552.4 686 54.4
arahy.Tifrunner.gnm1.ann1.485MU0 Arachis hypogaea HOM05D006822 ORTHO05D008884 1.5e-154 550.8 693 51.1
Sabra02G0118500 Salix brachista HOM05D006822 ORTHO05D008884 3.2e-154 549.7 680 52.8
arahy.Tifrunner.gnm1.ann1.K16L32 Arachis hypogaea HOM05D006822 ORTHO05D008884 5.5e-154 548.9 693 54.7
Lsat_1_v5_gn_7_7481 Lactuca sativa HOM05D006822 ORTHO05D008884 8.0e-153 545.0 670 53.0
VMungo1383G2566 Vigna mungo HOM05D006822 ORTHO05D008884 1.0e-152 544.7 683 49.9
Hma1.2p1_0053F.1_g030820 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 6.7e-152 542.0 537 55.1
Phvul.008G075100 Phaseolus vulgaris HOM05D006822 ORTHO05D008884 6.7e-152 542.0 685 49.6
COL.COLO4_12575 Corchorus olitorius HOM05D006822 ORTHO05D008884 1.5e-151 540.8 680 52.4
Medtr7g075170 Medicago truncatula HOM05D006822 ORTHO05D008884 2.2e-150 537.0 689 52.8
SGA_v2.0_scaffold95G28889 Striga asiatica HOM05D006822 ORTHO05D008884 6.3e-150 535.4 687 52.5
TPR.G26925 Trifolium pratense HOM05D006822 ORTHO05D008884 9.1e-149 531.6 696 54.7
Prupe.2G147600 Prunus persica HOM05D006822 ORTHO05D008884 1.6e-148 530.8 532 55.1
PGR031G1001 Punica granatum HOM05D006822 ORTHO05D008884 3.5e-148 529.6 674 54.9
Eucgr.D02443 Eucalyptus grandis HOM05D006822 ORTHO05D008884 6.5e-147 525.4 685 53.4
Nitab4.5_0013912g0010 Nicotiana tabacum HOM05D006822 ORTHO05D008884 9.4e-146 521.5 659 52.5
Psat3g115280 Pisum sativum HOM05D006822 ORTHO05D008884 1.4e-144 517.7 682 52.2
RcHm_v2.0_Chr1g0350861 Rosa chinensis HOM05D006822 ORTHO05D008884 1.7e-142 510.8 535 53.6
HPP92_015074 Vanilla planifolia HOM05D006822 ORTHO05D008884 2.8e-142 510.0 703 47.2
THA.LOC104817014 Tarenaya hassleriana HOM05D006822 ORTHO05D008884 4.1e-141 506.1 674 50.6
FAN01G0942 Fragaria x ananassa HOM05D006822 ORTHO05D008884 5.9e-140 502.3 661 50.8
Nn1g01174 Nelumbo nucifera HOM05D006822 ORTHO05D008884 1.9e-138 497.3 580 51.9
Actinidia31423 Actinidia chinensis HOM05D006822 ORTHO05D008884 2.1e-137 493.8 679 47.3
FAN06G2864 Fragaria x ananassa HOM05D006822 ORTHO05D008884 1.4e-136 491.1 527 53.5
MBI04_g46545_MAGBIO Magnolia biondii HOM05D006822 ORTHO05D008884 5.2e-136 489.2 581 56.8
Os04g0574600 Oryza sativa ssp. japonica HOM05D006822 ORTHO05D008884 8.9e-136 488.4 694 47.6
FvH4_7g12110 Fragaria vesca HOM05D006822 ORTHO05D008884 1.2e-135 488.0 527 53.1
Zm00001eb073430 Zea mays HOM05D006822 ORTHO05D008884 3.4e-135 486.5 693 50.1
unitig_22.g5376 Utricularia gibba HOM05D006822 ORTHO05D008884 1.5e-130 471.1 676 47.9
AT1G01930 Arabidopsis thaliana HOM05D006822 ORTHO05D008884 7.3e-130 468.8 528 51.1
Aa31LG1G11250 Aethionema arabicum HOM05D006822 ORTHO05D008884 1.6e-129 467.6 706 47.2
CDE11G0821 Ceratophyllum demersum HOM05D006822 ORTHO05D008884 2.1e-129 467.2 661 46.9
Sp1g00370 Schrenkiella parvula HOM05D006822 ORTHO05D008884 1.5e-127 461.1 515 51.3
CSS0048598 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 1.1e-125 454.9 577 56.0
Carub.0001s0031 Capsella rubella HOM05D006822 ORTHO05D008884 2.4e-125 453.8 522 50.2
AL1G10390 Arabidopsis lyrata HOM05D006822 ORTHO05D008884 5.4e-125 452.6 518 50.4
Lsat_1_v5_gn_3_133341 Lactuca sativa HOM05D006822 ORTHO05D008884 9.5e-122 441.8 525 48.0
Medtr7g075185 Medicago truncatula HOM05D006822 ORTHO05D008884 3.6e-121 439.9 655 42.4
Thhalv10007219m.g Eutrema salsugineum HOM05D006822 ORTHO05D008884 5.8e-119 432.6 519 49.9
C08p53940 Brassica napus HOM05D006822 ORTHO05D008884 1.9e-117 427.6 517 49.9
BolC8t52907H Brassica oleracea HOM05D006822 ORTHO05D008884 1.9e-117 427.6 517 49.9
ECA236G3401 Erigeron canadensis HOM05D006822 ORTHO05D008884 9.2e-117 425.2 554 51.3
HanXRQChr13g0425441 Helianthus annuus HOM05D006822 ORTHO05D008884 2.1e-116 424.1 454 51.1
BraA09t42269Z Brassica rapa HOM05D006822 ORTHO05D008884 6.0e-116 422.5 525 48.4
SEGI_38546 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 4.3e-114 416.4 718 42.9
Eucgr.L02337 Eucalyptus grandis HOM05D006822 ORTHO05D008884 1.6e-108 397.9 600 50.2
FAN03G3111 Fragaria x ananassa HOM05D006822 ORTHO05D008884 4.3e-98 363.2 526 44.3
ATR0757G063 Amborella trichopoda HOM05D006822 ORTHO05D008884 3.1e-96 357.1 376 53.5
ECA240G3107 Erigeron canadensis HOM05D006822 ORTHO05D008884 3.1e-96 357.1 434 49.1
COL.COLO4_05508 Corchorus olitorius HOM05D006822 ORTHO05D008884 3.3e-90 337.0 381 48.6
Mapoly0008s0196 Marchantia polymorpha HOM05D006822 ORTHO05D008884 3.1e-88 330.5 627 43.5
AagrBONN_evm.TU.Sc2ySwM_117.565 Anthoceros agrestis HOM05D006822 ORTHO05D008884 1.4e-85 321.6 625 39.5
Pp3c3_38070 Physcomitrium patens HOM05D006822 ORTHO05D008884 7.4e-82 309.3 534 37.3
FAN10G0810 Fragaria x ananassa HOM05D006822 ORTHO05D008884 3.2e-61 240.7 220 58.6
CARHR000420 Cardamine hirsuta HOM05D006822 ORTHO05D008884 7.9e-60 236.1 306 46.1
CARHR000430 Cardamine hirsuta HOM05D006822 ORTHO05D008884 1.3e-57 228.8 222 54.5
Cre07.g325715 Chlamydomonas reinhardtii HOM05D006822 ORTHO05D008884 3.3e-50 204.1 480 35.2
SEGI_35234 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 6.3e-41 173.3 239 44.4
PRCOL_00005597 Prasinoderma coloniale HOM05D006822 ORTHO05D008884 4.4e-34 150.6 361 31.6
Cfa022202 Carpinus fangiana HOM05D006822 ORTHO05D004559 7.7e-31 139.8 517 28.8
ATR0757G024 Amborella trichopoda HOM05D006822 ORTHO05D004559 3.3e-21 107.8 193 57.0
Medtr7g075430 Medicago truncatula HOM05D006822 ORTHO05D008884 2.4e-16 91.7 171 38.6
arahy.Tifrunner.gnm1.ann1.EYK22X Arachis hypogaea HOM05D006822 ORTHO05D008884 4.3e-13 80.9 51 72.5
Medtr7g075450 Medicago truncatula HOM05D006822 ORTHO05D008884 1.1e-08 66.2 103 40.8
CsaV3_4G032230 Cucumis sativus L. HOM05D006822 ORTHO05D008884 3.0e-06 58.2 99 38.4


User provided reference genes

Program Settings