Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 3.1e-105 385.2 199 100.0
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 8.7e-84 313.9 271 65.7
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 1.3e-76 290.0 254 62.6
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 9.6e-75 283.9 270 58.9
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 6.9e-73 277.7 270 58.1
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 1.2e-72 276.9 271 60.5
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 1.3e-71 273.5 270 57.4
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 1.1e-70 270.4 274 56.2
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 1.4e-70 270.0 270 55.9
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 2.5e-70 269.2 265 57.4
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 3.2e-70 268.9 270 55.6
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 7.2e-70 267.7 269 56.9
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 2.7e-69 265.8 259 57.9
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 2.7e-69 265.8 237 60.8
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 3.6e-69 265.4 272 53.7
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 2.3e-68 262.7 268 55.2
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 3.0e-68 262.3 268 56.0
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 6.7e-68 261.2 274 54.7
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 8.7e-68 260.8 273 54.6
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 1.1e-67 260.4 274 53.3
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 1.5e-67 260.0 269 54.6
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 3.3e-67 258.8 268 52.6
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 4.3e-67 258.5 270 57.8
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 5.7e-67 258.1 268 54.5
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 5.7e-67 258.1 271 52.8
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 7.4e-67 257.7 275 54.9
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 1.3e-66 256.9 270 54.4
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 1.6e-66 256.5 271 52.8
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 2.2e-66 256.1 271 53.1
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 2.8e-66 255.8 271 53.1
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 3.7e-66 255.4 271 53.1
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 4.8e-66 255.0 270 53.3
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 8.2e-66 254.2 271 52.4
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 1.1e-65 253.8 267 53.9
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 1.8e-65 253.1 269 52.4
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 1.2e-64 250.4 251 54.6
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 1.5e-64 250.0 271 53.5
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 1.5e-64 250.0 272 51.8
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 2.0e-64 249.6 271 51.7
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 2.6e-64 249.2 268 53.7
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 2.6e-64 249.2 267 52.8
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 2.6e-64 249.2 273 53.5
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 4.5e-64 248.4 269 53.2
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 5.9e-64 248.1 265 52.1
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 7.7e-64 247.7 265 52.8
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 1.0e-63 247.3 275 51.6
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 1.3e-63 246.9 273 52.4
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 1.3e-63 246.9 273 52.4
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 2.2e-63 246.1 267 52.4
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 3.8e-63 245.4 270 51.9
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 5.0e-63 245.0 268 53.4
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 6.5e-63 244.6 273 52.0
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 8.5e-63 244.2 269 51.7
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 8.5e-63 244.2 265 51.7
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.1e-62 243.8 273 51.3
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 3.2e-62 242.3 275 50.9
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 4.2e-62 241.9 273 51.6
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 4.2e-62 241.9 266 53.4
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 9.4e-62 240.7 273 51.3
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 9.4e-62 240.7 286 50.0
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 9.4e-62 240.7 265 51.3
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.2e-61 240.4 275 51.6
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 1.6e-61 240.0 265 50.2
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 3.6e-61 238.8 273 51.6
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 3.6e-61 238.8 273 50.5
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 1.4e-60 236.9 269 51.3
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 1.8e-60 236.5 266 52.3
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 1.8e-60 236.5 266 52.3
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.3e-60 236.1 278 52.5
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 5.1e-60 235.0 303 47.2
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 6.7e-60 234.6 261 51.3
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.1e-59 233.8 278 51.4
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 2.0e-59 233.0 269 48.7
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.6e-59 232.6 278 51.4
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 5.7e-59 231.5 276 50.0
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 7.4e-59 231.1 251 52.6
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 1.3e-58 230.3 270 47.8
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.8e-58 229.2 278 51.1
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 3.7e-58 228.8 270 48.5
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 3.7e-58 228.8 155 71.6
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 3.7e-58 228.8 181 65.2
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 6.3e-58 228.0 265 48.7
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 1.8e-57 226.5 274 49.6
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 1.8e-57 226.5 273 46.5
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 4.1e-57 225.3 153 73.9
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 2.0e-56 223.0 256 50.4
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 2.0e-56 223.0 181 64.1
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 2.9e-55 219.2 257 47.9
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 9.4e-54 214.2 147 72.1
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 9.4e-54 214.2 246 50.4
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 1.2e-53 213.8 264 47.7
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 2.7e-53 212.6 236 51.7
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 3.6e-53 212.2 245 51.4
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 1.1e-51 207.2 267 43.4
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 7.4e-51 204.5 264 48.1
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 4.8e-50 201.8 147 68.7
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 6.3e-50 201.4 149 66.4
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 5.3e-49 198.4 237 48.5
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 3.2e-46 189.1 242 45.0
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 1.0e-44 184.1 129 66.7
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 1.7e-42 176.8 235 46.0
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 5.3e-41 171.8 127 62.2
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 5.3e-41 171.8 130 62.3
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 7.0e-41 171.4 149 55.0
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 9.1e-41 171.0 108 81.5
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.6e-37 159.1 117 72.6
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.8e-36 156.8 117 71.8
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.6e-35 152.9 132 57.6
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 1.1e-30 137.5 90 74.4
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 4.2e-30 135.6 84 78.6
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 5.7e-27 125.2 109 62.4
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 1.7e-26 123.6 104 63.5
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 1.6e-24 117.1 111 58.6
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 2.7e-24 116.3 113 52.2
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 4.5e-24 115.5 343 30.0
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 1.5e-22 110.5 209 35.9
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 1.6e-21 107.1 186 40.9
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.6e-21 105.9 56 85.7
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 8.9e-20 101.3 133 42.9
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 2.0e-19 100.1 116 50.9
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 1.1e-17 94.4 58 77.6
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 1.8e-17 93.6 103 54.4
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 2.4e-17 93.2 58 79.3
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 7.3e-14 81.6 48 91.7
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 5.2e-12 75.5 103 42.7
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 3.2e-09 66.2 48 66.7
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 5.4e-09 65.5 68 51.5
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 9.2e-09 64.7 48 64.6
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 6.0e-08 62.0 48 60.4
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 1.0e-07 61.2 94 38.3
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 1.5e-06 57.4 48 56.2
arahy.Tifrunner.gnm1.ann1.LXE9FZ Arachis hypogaea HOM05D005802 ORTHO05D006992 2.5e-06 56.6 34 73.5
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 4.3e-06 55.8 60 50.0
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 9.5e-06 54.7 75 42.7


User provided reference genes

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