Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 5.9e-255 884.0 560 100.0
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 4.9e-124 449.1 545 54.7
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 1.4e-123 447.6 437 64.3
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 5.1e-113 412.5 357 68.6
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 5.6e-104 382.5 515 51.1
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 2.2e-63 247.7 508 40.0
QL04p036667 Quercus lobata HOM05D006954 ORTHO05D008729 2.4e-54 217.6 444 39.2
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 5.3e-54 216.5 446 38.3
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 5.9e-53 213.0 447 37.6
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 7.7e-53 212.6 581 34.6
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 6.5e-52 209.5 426 39.7
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 4.2e-51 206.8 416 38.5
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 5.5e-51 206.5 451 37.5
Oeu009770.1 Olea europaea HOM05D006954 ORTHO05D008729 7.2e-51 206.1 386 40.4
TWI59G0609 Tripterygium wilfordii HOM05D006954 ORTHO05D008729 7.2e-51 206.1 616 33.1
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 1.6e-50 204.9 421 38.7
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 1.0e-49 202.2 499 34.7
Gorai.001G175100 Gossypium raimondii HOM05D006954 ORTHO05D008729 1.4e-49 201.8 314 40.8
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 3.0e-49 200.7 491 37.3
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 3.9e-49 200.3 421 36.8
FAN01G1544 Fragaria x ananassa HOM05D006954 ORTHO05D008729 5.2e-49 199.9 537 35.9
Gohir.A07G147000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 1.1e-48 198.7 507 33.3
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 2.6e-48 197.6 588 34.4
Gohir.D07G153000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 4.4e-48 196.8 382 37.2
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 6.3e-47 193.0 302 44.0
FAN10G2562 Fragaria x ananassa HOM05D006954 ORTHO05D008729 8.2e-47 192.6 318 39.3
Oeu031219.1 Olea europaea HOM05D006954 ORTHO05D008729 8.2e-47 192.6 218 47.2
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.8e-46 191.4 395 35.9
FAN10G3525 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.4e-46 191.0 318 39.0
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 4.1e-46 190.3 330 39.4
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 4.1e-46 190.3 330 39.4
FAN06G1022 Fragaria x ananassa HOM05D006954 ORTHO05D008729 9.1e-46 189.1 395 35.9
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 9.1e-46 189.1 396 37.4
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 2.0e-45 188.0 251 45.0
FAN03G1627 Fragaria x ananassa HOM05D006954 ORTHO05D008729 4.5e-45 186.8 448 34.2
COL.COLO4_12483 Corchorus olitorius HOM05D006954 ORTHO05D008729 2.2e-44 184.5 443 35.4
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 2.2e-44 184.5 444 36.0
MD07G1114400 Malus domestica HOM05D006954 ORTHO05D008729 5.0e-44 183.3 466 35.6
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 6.5e-44 183.0 572 30.2
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 2.5e-43 181.0 404 37.9
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 2.1e-42 177.9 244 44.7
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 2.7e-42 177.6 269 46.8
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 2.7e-42 177.6 232 48.3
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 2.3e-41 174.5 424 35.8
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 2.3e-41 174.5 216 49.1
Peaxi162Scf00803g00025 Petunia axillaris HOM05D006954 ORTHO05D008729 4.4e-40 170.2 296 42.6
Glyma.11G167382 Glycine max HOM05D006954 ORTHO05D008729 9.7e-40 169.1 563 30.9
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 4.8e-39 166.8 332 36.7
Nitab4.5_0011151g0020 Nicotiana tabacum HOM05D006954 ORTHO05D008729 4.1e-38 163.7 348 37.4
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 9.1e-38 162.5 309 35.6
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 1.2e-37 162.2 310 36.1
CAN.G1872.2 Capsicum annuum HOM05D006954 ORTHO05D008729 5.9e-37 159.8 452 38.5
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 5.9e-37 159.8 229 41.9
VMungo1383G2724 Vigna mungo HOM05D006954 ORTHO05D008729 3.8e-36 157.1 239 41.4
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 5.0e-36 156.8 221 43.9
Lalb_Chr07g0190311 Lupinus albus HOM05D006954 ORTHO05D008729 6.5e-36 156.4 522 32.8
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 1.5e-35 155.2 225 42.7
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 2.1e-34 151.4 431 34.8
Hma1.2p1_0316F.1_g123150 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 2.1e-34 151.4 244 38.9
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 2.7e-34 151.0 228 42.1
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 5.2e-33 146.7 261 39.1
Glyma.01G134400 Glycine max HOM05D006954 ORTHO05D008729 1.2e-32 145.6 466 34.8
Phvul.008G143700 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 3.4e-32 144.1 247 41.7
Lalb_Chr01g0021361 Lupinus albus HOM05D006954 ORTHO05D008729 5.7e-32 143.3 406 34.7
SalBow5G1520 Salvia bowleyana HOM05D006954 ORTHO05D008729 9.8e-32 142.5 226 41.6
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 1.3e-31 142.1 303 37.6
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 2.8e-31 141.0 304 39.1
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 4.8e-31 140.2 261 38.3
Glyma.03G033300 Glycine max HOM05D006954 ORTHO05D008729 6.3e-31 139.8 460 33.7
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 9.1e-30 136.0 285 35.8
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 2.0e-29 134.8 231 36.4
PSO170G0413 Papaver somniferum HOM05D006954 ORTHO05D008729 7.7e-29 132.9 288 36.8
Phvul.010G071500 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 6.6e-28 129.8 533 28.7
Ca_19859_v3 Cicer arietinum L. HOM05D006954 ORTHO05D008729 8.6e-28 129.4 371 32.3
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 1.9e-27 128.3 249 36.9
Eucgr.E00424 Eucalyptus grandis HOM05D006954 ORTHO05D008729 3.3e-27 127.5 249 32.5
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 1.6e-26 125.2 231 35.9
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 2.1e-26 124.8 277 35.4
Psat0s3685g0160 Pisum sativum HOM05D006954 ORTHO05D008729 1.4e-25 122.1 401 30.7
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 1.8e-25 121.7 291 34.4
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 4.0e-25 120.6 244 35.7
Lj3g0019070 Lotus japonicus HOM05D006954 ORTHO05D008729 1.2e-24 119.0 367 31.1
TAR636G1544 Trochodendron aralioides HOM05D006954 ORTHO05D008729 1.7e-23 115.2 142 47.9
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 4.9e-23 113.6 204 37.7
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 1.8e-22 111.7 243 34.6
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 3.1e-22 110.9 299 33.1
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 5.4e-22 110.2 325 29.5
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 1.6e-21 108.6 298 30.2
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 2.7e-21 107.8 228 32.9
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 1.0e-20 105.9 331 31.4
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 1.0e-20 105.9 487 27.7
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.3e-20 105.5 204 33.8
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 3.9e-20 104.0 241 29.9
HPP92_008568 Vanilla planifolia HOM05D006954 ORTHO05D008729 6.6e-20 103.2 308 30.8
arahy.Tifrunner.gnm1.ann1.ADMQ1S Arachis hypogaea HOM05D006954 ORTHO05D008729 1.1e-19 102.4 222 32.4
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 1.1e-19 102.4 214 34.1
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 1.1e-19 102.4 214 34.1
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 2.5e-19 101.3 302 29.8
arahy.Tifrunner.gnm1.ann1.7WP6A4 Arachis hypogaea HOM05D006954 ORTHO05D008729 4.3e-19 100.5 226 31.9
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 5.6e-19 100.1 315 29.5
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 4.7e-18 97.1 315 28.9
Nitab4.5_0000618g0050 Nicotiana tabacum HOM05D020458 ORTHO05D022160 8.0e-18 96.3 207 33.3
Zm00001eb391500 Zea mays HOM05D006954 ORTHO05D008729 7.5e-16 89.7 288 28.8
Lj9P565T15 Lonicera japonica HOM05D006954 ORTHO05D008729 3.7e-15 87.4 76 56.6
Zm00001eb023500 Zea mays HOM05D006954 ORTHO05D008729 4.9e-15 87.0 326 28.2
CDE09G0910 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 1.4e-14 85.5 193 33.7
QL04p036188 Quercus lobata HOM05D006954 ORTHO05D008729 3.2e-14 84.3 377 30.2
Thecc.03G251300 Theobroma cacao HOM05D006954 ORTHO05D008729 9.2e-14 82.8 98 43.9
Actinidia22764 Actinidia chinensis HOM05D006954 ORTHO05D008729 2.7e-13 81.3 323 31.3
Nitab4.5_0001076g0060 Nicotiana tabacum HOM05D020458 ORTHO05D022160 3.5e-13 80.9 224 31.7
Nn6g33957 Nelumbo nucifera HOM05D006954 ORTHO05D008729 1.0e-12 79.3 119 37.8
ATR0317G083 Amborella trichopoda HOM05D006954 ORTHO05D008729 1.7e-12 78.6 402 25.6
Prupe.5G069800 Prunus persica HOM05D006954 ORTHO05D008729 2.3e-12 78.2 310 27.4
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 5.0e-12 77.0 184 29.9
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 1.2e-10 72.4 198 28.3
Sopen06g020850 Solanum pennellii HOM05D020458 ORTHO05D022160 1.6e-10 72.0 95 41.1
Solyc06g060730.3 Solanum lycopersicum HOM05D020458 ORTHO05D022160 1.1e-09 69.3 126 34.1
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 2.3e-09 68.2 234 25.2
PGSC0003DMG400011881 Solanum tuberosum HOM05D020458 ORTHO05D022160 4.0e-09 67.4 124 33.1
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 5.2e-09 67.0 213 27.2
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 6.8e-09 66.6 185 28.6
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 1.2e-08 65.9 240 29.2
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 1.2e-08 65.9 185 29.2
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 2.0e-08 65.1 235 24.3
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 4.4e-08 63.9 184 28.8
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 4.4e-08 63.9 195 26.7
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 4.4e-08 63.9 196 27.6
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 5.8e-08 63.5 189 29.1
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 9.8e-08 62.8 185 30.8
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 2.2e-07 61.6 217 27.2
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 2.2e-07 61.6 192 25.0
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 2.9e-07 61.2 185 25.9
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 2.9e-07 61.2 184 25.0
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 3.7e-07 60.8 192 27.1
SalBow1G1470 Salvia bowleyana HOM05D005220 ORTHO05D006082 3.7e-07 60.8 199 26.6
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 3.7e-07 60.8 177 29.4
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 4.9e-07 60.5 184 27.7
AUR62021593 Chenopodium quinoa HOM05D005220 ORTHO05D006082 6.4e-07 60.1 204 24.5
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 6.4e-07 60.1 194 28.9
Thecc.03G097300 Theobroma cacao HOM05D005220 ORTHO05D006082 6.4e-07 60.1 198 25.8
AUR62008499 Chenopodium quinoa HOM05D005220 ORTHO05D006082 1.4e-06 58.9 204 24.5
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 1.4e-06 58.9 184 25.0
PSO478G1432 Papaver somniferum HOM05D005220 ORTHO05D006082 1.4e-06 58.9 184 27.2
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 1.4e-06 58.9 184 25.5
Sc04g0003090 Simmondsia chinensis HOM05D005220 ORTHO05D006082 1.4e-06 58.9 218 25.2
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 1.9e-06 58.5 224 25.0
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 1.9e-06 58.5 214 24.8
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 1.9e-06 58.5 226 25.7
arahy.Tifrunner.gnm1.ann1.UWUI2N Arachis hypogaea HOM05D005220 ORTHO05D006082 3.2e-06 57.8 189 26.5
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 3.2e-06 57.8 185 26.5
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 3.2e-06 57.8 186 27.4
Hund02603 Selenicereus undatus HOM05D005220 ORTHO05D006082 3.2e-06 57.8 230 22.6
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 3.2e-06 57.8 183 24.0
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 4.1e-06 57.4 184 25.5
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 4.1e-06 57.4 211 27.0
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 5.4e-06 57.0 223 22.4
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 5.4e-06 57.0 184 25.5
PSO017G3052 Papaver somniferum HOM05D005220 ORTHO05D006082 5.4e-06 57.0 184 25.5
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 5.4e-06 57.0 192 25.0
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 7.0e-06 56.6 187 27.3
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 7.0e-06 56.6 178 25.3
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 9.2e-06 56.2 202 26.7
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 9.2e-06 56.2 209 23.9
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 9.2e-06 56.2 177 28.8
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 9.2e-06 56.2 214 25.7


User provided reference genes

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