Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 9.7e-68 260.0 130 100.0
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 6.1e-62 240.7 128 92.2
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 4.0e-61 238.0 128 91.4
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.4e-58 229.6 124 91.1
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.8e-58 229.2 124 91.1
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.2e-57 226.5 129 83.7
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.2e-57 226.5 129 83.7
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 2.9e-56 221.9 129 83.7
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 3.8e-56 221.5 124 86.3
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 6.6e-56 220.7 129 85.3
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 1.5e-55 219.5 129 83.7
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 1.9e-55 219.2 129 79.8
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 1.9e-55 219.2 129 82.2
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 2.5e-55 218.8 128 85.2
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 4.2e-55 218.0 129 81.4
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 5.5e-55 217.6 129 84.5
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 7.2e-55 217.2 129 82.2
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 7.2e-55 217.2 125 82.4
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 1.2e-54 216.5 129 80.6
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 1.2e-54 216.5 129 80.6
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.6e-54 216.1 126 85.7
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 1.6e-54 216.1 125 81.6
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 2.1e-54 215.7 126 83.3
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 2.1e-54 215.7 129 79.8
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 2.8e-54 215.3 129 80.6
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 6.1e-54 214.2 128 82.0
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 6.1e-54 214.2 128 82.0
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 8.0e-54 213.8 126 83.3
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 8.0e-54 213.8 129 79.1
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 8.0e-54 213.8 126 81.7
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 1.0e-53 213.4 129 79.8
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 1.0e-53 213.4 124 82.3
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 1.0e-53 213.4 128 81.2
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 1.0e-53 213.4 129 78.3
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 3.0e-53 211.8 129 79.8
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 3.0e-53 211.8 130 79.2
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 4.0e-53 211.5 124 81.5
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 4.0e-53 211.5 124 83.1
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 5.2e-53 211.1 128 78.9
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 6.8e-53 210.7 124 82.3
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 6.8e-53 210.7 128 79.7
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 6.8e-53 210.7 123 79.7
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.2e-52 209.9 125 80.0
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 2.6e-52 208.8 124 81.5
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 3.4e-52 208.4 126 80.2
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 4.4e-52 208.0 130 76.9
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 5.7e-52 207.6 128 81.2
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 5.7e-52 207.6 128 81.2
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 9.8e-52 206.8 128 78.9
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 131 78.6
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 1.3e-51 206.5 118 83.9
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.3e-51 206.5 128 80.5
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 129 79.8
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 129 79.8
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.3e-51 206.5 128 78.9
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 1.3e-51 206.5 124 79.8
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 1.7e-51 206.1 128 80.5
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 1.7e-51 206.1 128 78.9
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 1.7e-51 206.1 118 83.9
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.7e-51 206.1 128 80.5
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.7e-51 206.1 128 80.5
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 2.2e-51 205.7 126 78.6
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 2.8e-51 205.3 129 78.3
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 2.8e-51 205.3 128 75.8
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 3.7e-51 204.9 130 78.5
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.7e-51 204.9 128 80.5
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.7e-51 204.9 130 76.9
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 3.7e-51 204.9 130 76.9
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 3.7e-51 204.9 128 77.3
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 3.7e-51 204.9 128 79.7
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 6.3e-51 204.1 130 76.9
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 6.3e-51 204.1 124 78.2
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 6.3e-51 204.1 129 76.0
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 8.3e-51 203.8 128 77.3
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 1.1e-50 203.4 126 77.8
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.1e-50 203.4 125 77.6
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 1.1e-50 203.4 130 76.2
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 2.4e-50 202.2 126 76.2
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 2.4e-50 202.2 124 78.2
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.1e-50 201.8 130 76.2
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 3.1e-50 201.8 129 75.2
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 3.1e-50 201.8 130 76.9
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 4.1e-50 201.4 126 77.0
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 4.1e-50 201.4 126 77.0
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 4.1e-50 201.4 126 77.0
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.1e-50 201.4 128 79.7
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 4.1e-50 201.4 126 75.4
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 4.1e-50 201.4 128 77.3
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 5.4e-50 201.1 124 77.4
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 7.0e-50 200.7 128 77.3
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 7.0e-50 200.7 128 78.1
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 7.0e-50 200.7 128 76.6
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 7.0e-50 200.7 124 77.4
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 7.0e-50 200.7 126 77.0
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 1.2e-49 199.9 126 77.0
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 1.2e-49 199.9 126 77.0
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 1.2e-49 199.9 126 77.0
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 1.2e-49 199.9 125 78.4
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 1.6e-49 199.5 126 77.0
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 2.0e-49 199.1 124 77.4
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 3.5e-49 198.4 124 77.4
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 5.9e-49 197.6 124 78.2
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 1.0e-48 196.8 127 76.4
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 1.3e-48 196.4 131 74.8
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 1.7e-48 196.1 172 60.5
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 2.9e-48 195.3 129 71.3
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 8.6e-48 193.7 125 80.0
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 1.9e-47 192.6 129 74.4
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.2e-46 189.9 103 89.3
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 2.3e-45 185.7 124 71.8
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 4.0e-45 184.9 109 78.0
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 3.7e-43 178.3 129 72.9
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 4.9e-43 177.9 125 73.6
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 3.5e-41 171.8 112 73.2
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 1.8e-37 159.5 109 73.4
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 1.1e-34 150.2 84 88.1
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 3.5e-33 145.2 82 82.9
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 4.6e-33 144.8 82 78.0
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 9.5e-31 137.1 81 81.5
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 9.9e-28 127.1 102 61.8
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 8.3e-27 124.0 79 78.5
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 7.1e-26 120.9 89 66.3
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 2.7e-25 119.0 88 62.5
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.8e-21 106.3 61 83.6
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.3e-19 100.1 70 72.9
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.7e-19 99.8 57 84.2
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.7e-19 99.8 130 48.5
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.1e-18 97.1 70 71.4
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 9.2e-18 94.0 82 53.7
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 2.5e-15 85.9 81 53.1
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 6.9e-13 77.8 115 47.8
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 3.4e-12 75.5 52 76.9
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 4.6e-09 65.1 59 45.8
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.3e-08 63.5 40 70.0
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 1.5e-07 60.1 55 61.8
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 5.6e-07 58.2 36 75.0
Nitab4.5_0005166g0030 Nicotiana tabacum HOM05D001081 ORTHO05D025899 9.6e-07 57.4 55 60.0
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 2.1e-06 56.2 55 60.0
Nitab4.5_0026266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 6.2e-06 54.7 55 60.0


User provided reference genes

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