Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 1.1e-46 189.5 85 100.0
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.3e-41 172.6 85 90.6
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 6.6e-41 170.2 85 88.2
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 4.0e-38 161.0 84 83.3
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 4.0e-38 161.0 86 80.2
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 2.0e-37 158.7 84 81.0
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 2.0e-37 158.7 85 81.2
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 2.0e-37 158.7 85 81.2
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 2.0e-37 158.7 85 81.2
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 2.6e-37 158.3 83 83.1
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 2.6e-37 158.3 83 83.1
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 7.6e-37 156.8 85 77.6
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 9.9e-37 156.4 85 80.0
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.3e-36 156.0 82 81.7
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.3e-36 156.0 84 79.8
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 1.3e-36 156.0 84 78.6
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 1.7e-36 155.6 85 80.0
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 1.7e-36 155.6 85 80.0
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 2.2e-36 155.2 85 83.5
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.2e-36 155.2 84 79.8
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.2e-36 155.2 84 79.8
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.2e-36 155.2 84 79.8
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 2.2e-36 155.2 85 80.0
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 2.9e-36 154.8 83 81.9
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 2.9e-36 154.8 85 83.5
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 2.9e-36 154.8 83 81.9
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.9e-36 154.8 85 80.0
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 2.9e-36 154.8 83 79.5
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 3.8e-36 154.5 86 79.1
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 3.8e-36 154.5 84 76.2
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 3.8e-36 154.5 86 77.9
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 4.9e-36 154.1 86 79.1
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 4.9e-36 154.1 87 78.2
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 6.4e-36 153.7 85 80.0
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 6.4e-36 153.7 87 78.2
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 8.4e-36 153.3 85 78.8
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 8.4e-36 153.3 84 78.6
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 8.4e-36 153.3 83 80.7
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 1.1e-35 152.9 83 81.9
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.4e-35 152.5 83 80.7
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 2.4e-35 151.8 83 80.7
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 2.4e-35 151.8 87 75.9
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 2.4e-35 151.8 87 75.9
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 2.4e-35 151.8 85 80.0
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 2.4e-35 151.8 86 77.9
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 2.4e-35 151.8 81 84.0
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 3.2e-35 151.4 83 79.5
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 3.2e-35 151.4 83 79.5
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 3.2e-35 151.4 86 75.6
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 4.2e-35 151.0 84 78.6
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 4.2e-35 151.0 89 78.7
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 5.4e-35 150.6 83 79.5
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 9.3e-35 149.8 76 82.9
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 9.3e-35 149.8 78 79.5
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 9.3e-35 149.8 84 76.2
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 1.2e-34 149.4 84 79.8
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 1.6e-34 149.1 83 78.3
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 1.6e-34 149.1 84 76.2
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 2.7e-34 148.3 83 78.3
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 2.7e-34 148.3 83 79.5
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 2.7e-34 148.3 84 76.2
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 2.7e-34 148.3 83 75.9
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 2.7e-34 148.3 84 77.4
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 3.5e-34 147.9 84 77.4
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 4.6e-34 147.5 77 80.5
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 4.6e-34 147.5 83 78.3
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 4.6e-34 147.5 84 73.8
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 4.6e-34 147.5 79 78.5
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 4.6e-34 147.5 79 78.5
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 4.6e-34 147.5 79 79.7
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 4.6e-34 147.5 79 79.7
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 4.6e-34 147.5 79 79.7
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 6.0e-34 147.1 83 77.1
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 6.0e-34 147.1 84 77.4
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 7.9e-34 146.7 86 72.1
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 7.9e-34 146.7 78 78.2
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 7.9e-34 146.7 84 73.8
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 7.9e-34 146.7 85 75.3
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 1.0e-33 146.4 86 72.1
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 1.0e-33 146.4 77 80.5
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 1.0e-33 146.4 77 80.5
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 1.0e-33 146.4 88 76.1
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 1.0e-33 146.4 88 75.0
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 1.0e-33 146.4 88 76.1
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 1.0e-33 146.4 85 72.9
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 1.3e-33 146.0 83 77.1
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 1.3e-33 146.0 84 77.4
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 1.8e-33 145.6 84 75.0
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 2.3e-33 145.2 76 80.3
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 3.0e-33 144.8 84 77.4
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 3.0e-33 144.8 87 74.7
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 3.9e-33 144.4 81 76.5
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 3.9e-33 144.4 83 73.5
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 5.1e-33 144.1 84 71.4
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 8.7e-33 143.3 87 73.6
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 8.7e-33 143.3 84 75.0
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 1.9e-32 142.1 84 73.8
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 2.5e-32 141.7 77 79.2
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 3.3e-32 141.4 80 76.2
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 5.6e-32 140.6 84 72.6
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 7.4e-32 140.2 87 73.6
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 9.6e-32 139.8 86 72.1
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 1.3e-31 139.4 84 73.8
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 3.7e-31 137.9 83 69.9
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 2.4e-30 135.2 83 68.7
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 2.0e-29 132.1 77 71.4
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 5.8e-29 130.6 94 63.8
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 2.2e-28 128.6 72 73.6
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 3.8e-28 127.9 63 81.0
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 1.8e-25 119.0 63 76.2
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 8.7e-25 116.7 155 40.6
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 7.4e-24 113.6 83 65.1
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 7.4e-24 113.6 61 83.6
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 9.6e-24 113.2 80 65.0
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 1.8e-22 109.0 63 74.6
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 2.4e-22 108.6 66 72.7
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 3.1e-22 108.2 60 76.7
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 3.1e-22 108.2 60 76.7
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 4.0e-22 107.8 60 81.7
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 6.9e-22 107.1 59 83.1
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 1.2e-21 106.3 58 77.6
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 1.3e-20 102.8 67 74.6
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 1.7e-20 102.4 53 81.1
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 1.7e-20 102.4 60 76.7
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 2.2e-20 102.1 60 76.7
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 2.2e-20 102.1 61 67.2
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 2.9e-20 101.7 60 75.0
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 3.8e-20 101.3 54 79.6
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 1.4e-19 99.4 63 73.0
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 1.9e-19 99.0 63 73.0
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 3.2e-19 98.2 61 68.9
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 1.2e-18 96.3 61 70.5
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 2.1e-18 95.5 60 70.0
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 3.5e-18 94.7 60 71.7
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.8e-17 92.4 61 65.6
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 1.8e-17 92.4 61 67.2
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 3.9e-17 91.3 60 66.7
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 6.7e-17 90.5 61 67.2
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 8.7e-17 90.1 62 66.1
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 5.7e-16 87.4 60 65.0
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 4.1e-14 81.3 77 54.5
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 5.3e-14 80.9 70 51.4
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 9.0e-14 80.1 65 53.8
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 5.9e-13 77.4 66 57.6
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 1.9e-11 72.4 63 54.0


User provided reference genes

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