Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00517 Beta vulgaris HOM05D003932 ORTHO05D004546 1.0e-73 280.0 147 100.0
AUR62022756 Chenopodium quinoa HOM05D003932 ORTHO05D004546 2.2e-47 192.6 173 64.2
Ah.02g122980 Amaranthus hybridus HOM05D003932 ORTHO05D004546 2.5e-43 179.1 171 56.7
EL10Ac1g00516 Beta vulgaris HOM05D003932 ORTHO05D004546 8.0e-42 174.1 164 59.8
AUR62022757 Chenopodium quinoa HOM05D003932 ORTHO05D004546 3.9e-41 171.8 177 56.5
AUR62004306 Chenopodium quinoa HOM05D003932 ORTHO05D004546 3.2e-35 152.1 97 80.4
Sabra14G0057100 Salix brachista HOM05D003932 ORTHO05D004546 1.4e-33 146.7 148 52.7
Potri.014G078900 Populus trichocarpa HOM05D003932 ORTHO05D004546 4.0e-33 145.2 148 52.0
Hma1.2p1_0001F.1_g001770 Hydrangea macrophylla HOM05D003932 ORTHO05D004546 5.7e-32 141.4 155 49.0
Manes.05G038300 Manihot esculenta HOM05D003932 ORTHO05D004546 7.5e-32 141.0 155 48.4
Lj9A578T66 Lonicera japonica HOM05D003932 ORTHO05D004546 3.7e-31 138.7 148 48.6
Dinv32438 Davidia involucrata HOM05D003932 ORTHO05D004546 6.3e-31 137.9 147 48.3
TWI14G0637 Tripterygium wilfordii HOM05D003932 ORTHO05D004546 6.3e-31 137.9 156 46.8
TWI59G0559 Tripterygium wilfordii HOM05D003932 ORTHO05D004546 8.2e-31 137.5 154 48.7
FvH4_7g13461 Fragaria vesca HOM05D003932 ORTHO05D004546 1.1e-30 137.1 149 49.7
Sc23g0003150 Simmondsia chinensis HOM05D003932 ORTHO05D004546 1.1e-30 137.1 145 51.0
FAN10G0548 Fragaria x ananassa HOM05D003932 ORTHO05D004546 1.4e-30 136.7 149 50.3
GSVIVG01027495001 Vitis vinifera HOM05D003932 ORTHO05D004546 1.4e-30 136.7 150 47.3
Potri.002G155500 Populus trichocarpa HOM05D003932 ORTHO05D004546 5.3e-30 134.8 147 49.7
RcHm_v2.0_Chr1g0352841 Rosa chinensis HOM05D003932 ORTHO05D004546 9.1e-30 134.0 156 45.5
FAN01G0068 Fragaria x ananassa HOM05D003932 ORTHO05D004546 1.2e-29 133.7 97 64.9
Hund16950 Selenicereus undatus HOM05D003932 ORTHO05D004546 1.2e-29 133.7 171 47.4
Aa31LG10G15280 Aethionema arabicum HOM05D003932 ORTHO05D004546 1.6e-29 133.3 100 66.0
Manes.05G038600 Manihot esculenta HOM05D003932 ORTHO05D004546 1.6e-29 133.3 97 63.9
GSVIVG01027496001 Vitis vinifera HOM05D003932 ORTHO05D004546 1.6e-29 133.3 173 46.8
Duzib133G0425 Durio zibethinus HOM05D003932 ORTHO05D004546 2.0e-29 132.9 160 48.8
FvH4_7g13460 Fragaria vesca HOM05D003932 ORTHO05D004546 2.7e-29 132.5 156 46.8
FAN06G4428 Fragaria x ananassa HOM05D003932 ORTHO05D004546 2.7e-29 132.5 97 64.9
Peaxi162Scf00021g01218 Petunia axillaris HOM05D003932 ORTHO05D004546 3.5e-29 132.1 97 62.9
Nitab4.5_0006421g0030 Nicotiana tabacum HOM05D003932 ORTHO05D004546 4.5e-29 131.7 97 60.8
QL08p050077 Quercus lobata HOM05D003932 ORTHO05D004546 4.5e-29 131.7 145 49.0
RcHm_v2.0_Chr1g0352831 Rosa chinensis HOM05D003932 ORTHO05D004546 4.5e-29 131.7 156 46.2
GSVIVG01027494001 Vitis vinifera HOM05D003932 ORTHO05D004546 5.9e-29 131.3 98 63.3
A04p01220 Brassica napus HOM05D003932 ORTHO05D004546 1.7e-28 129.8 97 64.9
BraA04t15840Z Brassica rapa HOM05D003932 ORTHO05D004546 1.7e-28 129.8 97 64.9
Thecc.01G365900 Theobroma cacao HOM05D003932 ORTHO05D004546 1.7e-28 129.8 149 51.0
Actinidia33434 Actinidia chinensis HOM05D003932 ORTHO05D004546 2.2e-28 129.4 149 46.3
AT3G61200 Arabidopsis thaliana HOM05D003932 ORTHO05D004546 2.2e-28 129.4 97 59.8
BcaC02g10211 Brassica carinata HOM05D003932 ORTHO05D004546 2.2e-28 129.4 97 64.9
C04p31500 Brassica napus HOM05D003932 ORTHO05D004546 2.2e-28 129.4 97 64.9
BolC4t24695H Brassica oleracea HOM05D003932 ORTHO05D004546 2.2e-28 129.4 97 64.9
Cfa004206 Carpinus fangiana HOM05D003932 ORTHO05D004546 2.2e-28 129.4 155 45.2
Cpa.g.sc18.210 Carica papaya HOM05D003932 ORTHO05D004546 2.9e-28 129.0 120 55.0
Haze_15204 Corylus avellana HOM05D003932 ORTHO05D004546 2.9e-28 129.0 147 48.3
FAN06G0832 Fragaria x ananassa HOM05D003932 ORTHO05D004546 3.8e-28 128.6 149 46.3
FAN06G3956 Fragaria x ananassa HOM05D003932 ORTHO05D004546 3.8e-28 128.6 149 46.3
FAN10G1165 Fragaria x ananassa HOM05D003932 ORTHO05D004546 3.8e-28 128.6 156 44.9
MD07G1126000 Malus domestica HOM05D003932 ORTHO05D004546 6.5e-28 127.9 97 59.8
DCAR_025147 Daucus carota HOM05D003932 ORTHO05D004546 8.5e-28 127.5 98 63.3
PGSC0003DMG400027783 Solanum tuberosum HOM05D003932 ORTHO05D004546 8.5e-28 127.5 98 58.2
CiPaw.02G027200 Carya illinoinensis HOM05D003932 ORTHO05D004546 1.1e-27 127.1 97 63.9
Eucgr.E00193 Eucalyptus grandis HOM05D003932 ORTHO05D004546 1.1e-27 127.1 98 62.2
Gohir.A11G086400 Gossypium hirsutum HOM05D003932 ORTHO05D004546 1.1e-27 127.1 150 46.0
PGSC0003DMG400027782 Solanum tuberosum HOM05D003932 ORTHO05D004546 1.1e-27 127.1 97 56.7
Solyc01g091560.2 Solanum lycopersicum HOM05D003932 ORTHO05D004546 1.5e-27 126.7 98 58.2
CiPaw.02G026900 Carya illinoinensis HOM05D003932 ORTHO05D004546 1.9e-27 126.3 101 62.4
Manes.05G038400 Manihot esculenta HOM05D003932 ORTHO05D004546 1.9e-27 126.3 155 45.8
Cfa004205 Carpinus fangiana HOM05D003932 ORTHO05D004546 2.5e-27 125.9 98 61.2
Sp5g02170 Schrenkiella parvula HOM05D003932 ORTHO05D004546 2.5e-27 125.9 97 60.8
Cc00_g12140 Coffea canephora HOM05D003932 ORTHO05D004546 3.2e-27 125.6 98 61.2
MSTRG.28209 Avicennia marina HOM05D003932 ORTHO05D004546 4.2e-27 125.2 98 60.2
Haze_15203 Corylus avellana HOM05D003932 ORTHO05D004546 4.2e-27 125.2 146 46.6
MD01G1049100 Malus domestica HOM05D003932 ORTHO05D004546 4.2e-27 125.2 97 60.8
Oeu053298.1 Olea europaea HOM05D003932 ORTHO05D004546 4.2e-27 125.2 98 63.3
Gorai.007G096600 Gossypium raimondii HOM05D003932 ORTHO05D004546 5.5e-27 124.8 151 45.7
Manes.05G038500 Manihot esculenta HOM05D003932 ORTHO05D004546 5.5e-27 124.8 97 60.8
Ciclev10022587m.g Citrus clementina HOM05D003932 ORTHO05D004546 7.2e-27 124.4 98 60.2
Gohir.D11G090600 Gossypium hirsutum HOM05D003932 ORTHO05D004546 7.2e-27 124.4 151 45.7
Lalb_Chr10g0097321 Lupinus albus HOM05D003932 ORTHO05D004546 9.4e-27 124.0 165 43.6
Peaxi162Scf00021g01219 Petunia axillaris HOM05D003932 ORTHO05D004546 9.4e-27 124.0 98 60.2
CANSAT56G2307 Cannabis sativa HOM05D003932 ORTHO05D004546 1.2e-26 123.6 155 40.6
Carub.0005s2787 Capsella rubella HOM05D003932 ORTHO05D004546 1.2e-26 123.6 97 58.8
FAN01G1053 Fragaria x ananassa HOM05D003932 ORTHO05D004546 1.2e-26 123.6 149 45.6
Sopen01g037330 Solanum pennellii HOM05D003932 ORTHO05D004546 1.2e-26 123.6 98 57.1
AL5G43470 Arabidopsis lyrata HOM05D003932 ORTHO05D004546 1.6e-26 123.2 97 58.8
arahy.Tifrunner.gnm1.ann1.BEZL7V Arachis hypogaea HOM05D003932 ORTHO05D004546 1.6e-26 123.2 97 60.8
Prupe.2G158100 Prunus persica HOM05D003932 ORTHO05D004546 1.6e-26 123.2 98 56.1
Atru.chr5.428 Acer truncatum HOM05D003932 ORTHO05D004546 2.1e-26 122.9 157 41.4
Cfa004207 Carpinus fangiana HOM05D003932 ORTHO05D004546 2.1e-26 122.9 146 45.9
CARHR171510 Cardamine hirsuta HOM05D003932 ORTHO05D004546 2.7e-26 122.5 97 57.7
COL.COLO4_12605 Corchorus olitorius HOM05D003932 ORTHO05D004546 2.7e-26 122.5 158 44.3
TAR629G2445 Trochodendron aralioides HOM05D003932 ORTHO05D004546 2.7e-26 122.5 119 50.4
arahy.Tifrunner.gnm1.ann1.67TC14 Arachis hypogaea HOM05D003932 ORTHO05D004546 4.7e-26 121.7 162 40.7
CAN.G170.13 Capsicum annuum HOM05D003932 ORTHO05D004546 4.7e-26 121.7 98 59.2
QL08p050106 Quercus lobata HOM05D003932 ORTHO05D004546 4.7e-26 121.7 96 59.4
Atru.chr5.432 Acer truncatum HOM05D003932 ORTHO05D004546 6.1e-26 121.3 100 57.0
CSS0035798 Camellia sinensis var. sinensis HOM05D003932 ORTHO05D004546 8.0e-26 120.9 98 57.1
DCAR_020430 Daucus carota HOM05D003932 ORTHO05D004546 8.0e-26 120.9 97 58.8
Lalb_Chr19g0127151 Lupinus albus HOM05D003932 ORTHO05D004546 8.0e-26 120.9 159 41.5
PGSC0003DMG400027784 Solanum tuberosum HOM05D003932 ORTHO05D004546 8.0e-26 120.9 98 59.2
Migut.N01424 Erythranthe guttata HOM05D003932 ORTHO05D004546 1.0e-25 120.6 98 59.2
Gohir.D08G151100 Gossypium hirsutum HOM05D003932 ORTHO05D004546 1.0e-25 120.6 97 58.8
Gorai.004G156800 Gossypium raimondii HOM05D003932 ORTHO05D004546 1.0e-25 120.6 97 58.8
Atru.chr5.429 Acer truncatum HOM05D003932 ORTHO05D004546 1.4e-25 120.2 155 38.7
QL08p050131 Quercus lobata HOM05D003932 ORTHO05D004546 1.4e-25 120.2 94 57.4
SGA_v2.0_scaffold11G05654 Striga asiatica HOM05D003932 ORTHO05D004546 2.3e-25 119.4 97 55.7
Solyc01g091550.3 Solanum lycopersicum HOM05D003932 ORTHO05D004546 4.0e-25 118.6 161 42.9
Sopen01g037320 Solanum pennellii HOM05D003932 ORTHO05D004546 4.0e-25 118.6 161 42.9
SalBow5G4627 Salvia bowleyana HOM05D003932 ORTHO05D004546 5.2e-25 118.2 116 53.4
unitig_22.g6806 Utricularia gibba HOM05D003932 ORTHO05D004546 6.8e-25 117.9 98 58.2
Atru.chr5.430 Acer truncatum HOM05D003932 ORTHO05D004546 8.8e-25 117.5 155 38.1
SalBow5G0579 Salvia bowleyana HOM05D003932 ORTHO05D004546 1.2e-24 117.1 113 53.1
MELO3C006135.2 Cucumis melo HOM05D003932 ORTHO05D004546 1.5e-24 116.7 156 42.9
Sopen01g037340 Solanum pennellii HOM05D003932 ORTHO05D004546 1.5e-24 116.7 97 54.6
Medtr8g032450 Medicago truncatula HOM05D003932 ORTHO05D004546 2.0e-24 116.3 97 58.8
Medtr8g433000 Medicago truncatula HOM05D003932 ORTHO05D004546 2.0e-24 116.3 97 58.8
TPR.G9818 Trifolium pratense HOM05D003932 ORTHO05D004546 2.0e-24 116.3 97 58.8
Aqoxy7G00392 Aquilegia oxysepala HOM05D003932 ORTHO05D004546 2.6e-24 115.9 150 46.0
PSO782G0460 Papaver somniferum HOM05D003932 ORTHO05D004546 2.6e-24 115.9 147 43.5
VMungo1383G1115 Vigna mungo HOM05D003932 ORTHO05D004546 2.6e-24 115.9 156 39.7
Psat4g153440 Pisum sativum HOM05D003932 ORTHO05D004546 3.4e-24 115.5 97 57.7
Sed0026606 Sechium edule HOM05D003932 ORTHO05D004546 3.4e-24 115.5 97 56.7
Glyma.07G075500 Glycine max HOM05D003932 ORTHO05D004546 5.7e-24 114.8 97 57.7
Lj1g0003765 Lotus japonicus HOM05D003932 ORTHO05D004546 5.7e-24 114.8 97 57.7
PSO478G3215 Papaver somniferum HOM05D003932 ORTHO05D004546 5.7e-24 114.8 147 42.9
Sed0002580 Sechium edule HOM05D003932 ORTHO05D004546 5.7e-24 114.8 97 52.6
VMungo0331G1015 Vigna mungo HOM05D003932 ORTHO05D004546 5.7e-24 114.8 97 56.7
arahy.Tifrunner.gnm1.ann1.UY84ZS Arachis hypogaea HOM05D003932 ORTHO05D004546 7.5e-24 114.4 157 40.1
Solyc01g091570.3 Solanum lycopersicum HOM05D003932 ORTHO05D004546 1.3e-23 113.6 97 52.6
Ca_07852_v3 Cicer arietinum L. HOM05D003932 ORTHO05D004546 1.7e-23 113.2 133 44.4
arahy.Tifrunner.gnm1.ann1.MUI9WD Arachis hypogaea HOM05D003932 ORTHO05D004546 2.8e-23 112.5 160 39.4
Psat4g153400 Pisum sativum HOM05D003932 ORTHO05D004546 2.8e-23 112.5 97 55.7
CsaV3_3G009140 Cucumis sativus L. HOM05D003932 ORTHO05D004546 4.8e-23 111.7 97 56.7
ECA236G4160 Erigeron canadensis HOM05D003932 ORTHO05D004546 4.8e-23 111.7 97 54.6
Prupe.2G157800 Prunus persica HOM05D003932 ORTHO05D004546 4.8e-23 111.7 91 57.1
MSTRG.28210 Avicennia marina HOM05D003932 ORTHO05D004546 8.3e-23 110.9 98 54.1
Glyma.03G015500 Glycine max HOM05D003932 ORTHO05D004546 1.1e-22 110.5 97 54.6
PSO478G2301 Papaver somniferum HOM05D003932 ORTHO05D004546 1.1e-22 110.5 100 55.0
arahy.Tifrunner.gnm1.ann1.VZ643L Arachis hypogaea HOM05D003932 ORTHO05D004546 1.8e-22 109.8 160 38.8
Ca_25783_v3 Cicer arietinum L. HOM05D003932 ORTHO05D004546 1.8e-22 109.8 97 55.7
Phvul.010G093700 Phaseolus vulgaris HOM05D003932 ORTHO05D004546 3.1e-22 109.0 97 52.6
Lsat_1_v5_gn_7_5520 Lactuca sativa HOM05D003932 ORTHO05D004546 7.0e-22 107.8 97 54.6
Lsat_1_v5_gn_7_5540 Lactuca sativa HOM05D003932 ORTHO05D004546 7.0e-22 107.8 97 54.6
Glyma.07G075400 Glycine max HOM05D003932 ORTHO05D004546 1.6e-21 106.7 150 39.3
Sed0003987 Sechium edule HOM05D003932 ORTHO05D004546 1.6e-21 106.7 97 54.6
vmacro20959 Vaccinium macrocarpon HOM05D003932 ORTHO05D004546 1.6e-21 106.7 88 59.1
arahy.Tifrunner.gnm1.ann1.LBI1HC Arachis hypogaea HOM05D003932 ORTHO05D004546 2.0e-21 106.3 94 54.3
Lj3g0012135 Lotus japonicus HOM05D003932 ORTHO05D004546 2.0e-21 106.3 97 53.6
MBI04_g04735_MAGBIO Magnolia biondii HOM05D003932 ORTHO05D004546 1.0e-20 104.0 113 48.7
QL08p050127 Quercus lobata HOM05D003932 ORTHO05D004546 1.0e-20 104.0 176 36.9
arahy.Tifrunner.gnm1.ann1.NCU55Y Arachis hypogaea HOM05D003932 ORTHO05D004546 1.3e-20 103.6 94 52.1
Zm00001eb306670 Zea mays HOM05D003932 ORTHO05D004546 1.3e-20 103.6 155 37.4
Glyma.18G224900 Glycine max HOM05D003932 ORTHO05D004546 2.3e-20 102.8 98 49.0
ECA236G1648 Erigeron canadensis HOM05D003932 ORTHO05D004546 3.8e-20 102.1 97 49.5
ATR0757G134 Amborella trichopoda HOM05D003932 ORTHO05D004546 3.3e-19 99.0 152 38.2
Dinv32437 Davidia involucrata HOM05D003932 ORTHO05D004546 5.5e-19 98.2 131 42.0
HPP92_025613 Vanilla planifolia HOM05D003932 ORTHO05D004546 1.6e-18 96.7 150 36.0
Os07g0463500 Oryza sativa ssp. japonica HOM05D003932 ORTHO05D004546 6.8e-17 91.3 98 46.9
Os07g0462700 Oryza sativa ssp. japonica HOM05D003932 ORTHO05D004546 2.0e-16 89.7 98 44.9
SalBow5G2663 Salvia bowleyana HOM05D003932 ORTHO05D004546 2.0e-16 89.7 93 43.0
SalBow5G3861 Salvia bowleyana HOM05D003932 ORTHO05D004546 2.0e-16 89.7 93 43.0
MBI04_g04733_MAGBIO Magnolia biondii HOM05D003932 ORTHO05D004546 6.3e-15 84.7 97 45.4
SalBow5G2036 Salvia bowleyana HOM05D003932 ORTHO05D004546 8.3e-15 84.3 92 44.6
Peaxi162Scf00021g01111 Petunia axillaris HOM05D003932 ORTHO05D004546 1.3e-12 77.0 126 38.9
Psat4g153520 Pisum sativum HOM05D003932 ORTHO05D004546 3.8e-12 75.5 109 40.4
Thhalv10006257m.g Eutrema salsugineum HOM05D003932 ORTHO05D004546 1.1e-11 73.9 49 65.3
Nitab4.5_0005423g0050 Nicotiana tabacum HOM05D003932 ORTHO05D004546 4.3e-11 72.0 58 56.9
FAN03G2927 Fragaria x ananassa HOM05D003932 ORTHO05D004546 5.6e-11 71.6 110 36.4
Phvul.008G073300 Phaseolus vulgaris HOM05D003932 ORTHO05D004546 3.6e-10 68.9 67 47.8
Nitab4.5_0015647g0010 Nicotiana tabacum HOM05D003932 ORTHO05D004546 1.0e-09 67.4 55 50.9
QL08p050082 Quercus lobata HOM05D003932 ORTHO05D004546 4.0e-09 65.5 101 37.6
ClCG05G001750 Citrullus lanatus HOM05D003932 ORTHO05D004546 6.8e-09 64.7 111 36.0
Gohir.A08G129700 Gossypium hirsutum HOM05D003932 ORTHO05D004546 8.9e-09 64.3 52 57.7
RcHm_v2.0_Chr5g0032131 Rosa chinensis HOM05D003932 ORTHO05D004546 1.2e-08 63.9 50 56.0
Nitab4.5_0005423g0070 Nicotiana tabacum HOM05D003932 ORTHO05D004546 2.0e-08 63.2 53 58.5
Nn1g01410 Nelumbo nucifera HOM05D003932 ORTHO05D004546 4.4e-08 62.0 131 32.8
PSO478G2599 Papaver somniferum HOM05D003932 ORTHO05D004546 7.5e-08 61.2 55 54.5
SEGI_37049 Sequoiadendron giganteum HOM05D003932 ORTHO05D004546 1.7e-07 60.1 82 42.7
Rhsim01G0152800 Rhododendron simsii HOM05D003932 ORTHO05D004546 2.9e-07 59.3 50 54.0
CDE07G1632 Ceratophyllum demersum HOM05D003932 ORTHO05D004546 6.4e-07 58.2 72 40.3
Oeu056332.1 Olea europaea HOM05D003932 ORTHO05D004546 8.3e-07 57.8 50 58.0
CDE04G1088 Ceratophyllum demersum HOM05D001332 ORTHO05D001894 4.1e-06 55.5 98 35.7
AUR62000623 Chenopodium quinoa HOM05D001332 ORTHO05D001894 4.1e-06 55.5 142 31.0
ClCG02G000220 Citrullus lanatus HOM05D001332 ORTHO05D001894 5.4e-06 55.1 98 34.7
Sed0019998 Sechium edule HOM05D001332 ORTHO05D001894 7.0e-06 54.7 98 32.7
BcaC07g36919 Brassica carinata HOM05D001332 ORTHO05D001894 9.2e-06 54.3 99 34.3
A08p37010 Brassica napus HOM05D001332 ORTHO05D001894 9.2e-06 54.3 99 34.3
C08p01000 Brassica napus HOM05D001332 ORTHO05D001894 9.2e-06 54.3 99 34.3
BolC8t46900H Brassica oleracea HOM05D001332 ORTHO05D001894 9.2e-06 54.3 99 34.3


User provided reference genes

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