Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 2.0e-113 412.5 218 100.0
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 1.6e-78 296.6 211 71.1
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 3.3e-44 182.6 215 48.4
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 1.1e-39 167.5 221 48.0
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 7.2e-39 164.9 219 47.9
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 1.3e-37 160.6 222 43.2
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 3.9e-37 159.1 221 44.8
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 3.3e-36 156.0 216 45.8
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 9.7e-36 154.5 219 47.5
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 1.3e-35 154.1 220 46.8
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 2.2e-35 153.3 222 43.2
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 3.7e-35 152.5 220 45.9
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 8.2e-35 151.4 220 45.5
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 1.1e-34 151.0 221 44.3
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 1.8e-34 150.2 221 43.9
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 2.4e-34 149.8 220 45.5
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 2.4e-34 149.8 221 43.0
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 3.1e-34 149.4 221 42.1
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 2.6e-33 146.4 217 44.2
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 3.4e-33 146.0 217 44.7
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 4.5e-33 145.6 220 45.0
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 4.5e-33 145.6 216 40.7
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 5.9e-33 145.2 218 41.7
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 5.9e-33 145.2 217 41.0
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 7.7e-33 144.8 224 41.5
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 1.3e-32 144.1 219 42.0
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 2.2e-32 143.3 217 41.0
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 2.2e-32 143.3 217 41.5
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 3.8e-32 142.5 217 41.9
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 5.0e-32 142.1 205 43.4
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 5.0e-32 142.1 220 41.4
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 8.5e-32 141.4 136 54.4
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 8.5e-32 141.4 223 39.5
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 1.4e-31 140.6 217 40.6
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 2.5e-31 139.8 218 41.3
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 2.5e-31 139.8 219 41.1
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 2.5e-31 139.8 213 43.2
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 4.2e-31 139.0 217 41.9
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 4.2e-31 139.0 207 41.5
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 4.2e-31 139.0 215 42.8
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 5.5e-31 138.7 220 40.9
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 2.1e-30 136.7 219 40.2
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 2.1e-30 136.7 220 43.2
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 2.1e-30 136.7 217 40.6
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 4.6e-30 135.6 216 41.2
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 6.1e-30 135.2 218 41.7
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 7.9e-30 134.8 216 40.7
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 1.4e-29 134.0 216 40.7
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 1.4e-29 134.0 221 42.1
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 1.8e-29 133.7 226 41.2
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 1.8e-29 133.7 217 41.0
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 2.6e-28 129.8 215 40.9
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 4.4e-28 129.0 220 38.6
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 4.4e-28 129.0 217 38.2
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 4.4e-28 129.0 220 37.7
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 5.7e-28 128.6 220 40.0
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 1.3e-27 127.5 188 45.7
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 1.7e-27 127.1 221 38.0
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 3.7e-27 125.9 219 39.7
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 4.8e-27 125.6 136 50.7
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 8.2e-27 124.8 220 37.3
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 1.1e-26 124.4 219 39.3
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 1.8e-26 123.6 216 38.0
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 2.4e-26 123.2 216 42.1
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 3.1e-26 122.9 229 37.6
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 2.0e-25 120.2 219 38.8
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 3.4e-25 119.4 218 39.4
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 3.4e-25 119.4 219 38.8
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 4.5e-25 119.0 217 37.8
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 7.7e-25 118.2 216 38.0
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 1.7e-24 117.1 217 37.8
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 1.7e-24 117.1 216 38.4
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 2.2e-24 116.7 216 39.4
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 2.9e-24 116.3 216 37.5
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 3.8e-24 115.9 217 38.7
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 3.8e-24 115.9 208 39.4
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 1.1e-23 114.4 216 38.9
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 1.4e-23 114.0 216 38.9
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 1.4e-23 114.0 221 37.1
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 1.9e-23 113.6 216 40.3
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 1.9e-23 113.6 219 37.9
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 2.5e-23 113.2 216 37.5
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 3.2e-23 112.8 220 38.2
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 5.5e-23 112.1 219 36.5
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 7.2e-23 111.7 216 37.0
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 9.4e-23 111.3 217 35.9
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 9.4e-23 111.3 219 37.9
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 2.1e-22 110.2 211 37.4
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 2.1e-22 110.2 217 34.6
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 2.1e-22 110.2 219 37.9
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 2.7e-22 109.8 216 35.6
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 3.6e-22 109.4 218 36.2
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 3.6e-22 109.4 216 36.6
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 4.7e-22 109.0 219 35.6
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 4.7e-22 109.0 218 36.2
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 6.1e-22 108.6 224 38.4
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 7.9e-22 108.2 213 34.7
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 1.0e-21 107.8 216 35.2
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 2.3e-21 106.7 219 33.8
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 3.0e-21 106.3 216 35.2
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 5.2e-21 105.5 216 33.8
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 5.2e-21 105.5 216 34.7
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 5.2e-21 105.5 220 37.3
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 1.1e-20 104.4 211 35.5
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 1.1e-20 104.4 191 40.3
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 1.5e-20 104.0 223 36.8
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 2.0e-20 103.6 219 35.6
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 2.6e-20 103.2 216 35.2
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 4.4e-20 102.4 210 36.7
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 4.4e-20 102.4 220 34.5
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 5.7e-20 102.1 223 32.7
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 7.4e-20 101.7 149 43.6
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 1.3e-19 100.9 220 33.6
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 1.7e-19 100.5 226 31.9
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.7e-19 100.5 220 33.6
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.7e-19 100.5 229 36.2
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 6.3e-19 98.6 220 37.7
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 8.2e-19 98.2 206 35.0
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 1.1e-18 97.8 222 32.9
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 3.1e-18 96.3 206 34.5
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 3.1e-18 96.3 211 33.6
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 3.1e-18 96.3 219 32.4
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 5.3e-18 95.5 186 37.1
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 7.0e-18 95.1 124 45.2
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 1.2e-17 94.4 206 33.5
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 1.6e-17 94.0 224 31.2
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 2.0e-17 93.6 219 32.4
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 5.9e-17 92.0 209 32.5
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 6.5e-16 88.6 146 41.8
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 1.5e-15 87.4 215 34.0
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 1.5e-15 87.4 216 31.5
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 1.9e-15 87.0 220 31.4
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 1.2e-14 84.3 147 38.1
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 1.6e-14 84.0 208 30.8
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 2.7e-14 83.2 209 33.0
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 1.0e-13 81.3 147 35.4
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 2.3e-13 80.1 200 31.5
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 3.0e-13 79.7 200 31.0
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 3.0e-13 79.7 200 31.0
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 4.0e-13 79.3 211 29.9
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 4.0e-13 79.3 170 36.5
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 5.2e-13 79.0 199 33.2
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 6.7e-13 78.6 200 31.0
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 6.7e-13 78.6 203 30.5
AUR62014356 Chenopodium quinoa HOM05D004648 ORTHO05D137809 8.8e-13 78.2 105 50.5
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.2e-12 77.8 199 31.2
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 2.0e-12 77.0 213 31.9
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 1.3e-11 74.3 215 29.3
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 1.3e-11 74.3 198 30.3
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 2.2e-11 73.6 181 31.5
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 3.5e-09 66.2 208 28.8


User provided reference genes

Program Settings