Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 3.4e-155 551.6 274 100.0
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 4.1e-140 501.5 275 90.9
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 6.9e-140 500.7 275 90.2
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.5e-139 499.6 275 90.5
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 9.7e-134 480.3 274 86.1
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.6e-133 479.6 274 86.5
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 2.2e-133 479.2 274 86.1
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 4.8e-133 478.0 274 85.0
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 1.8e-132 476.1 274 85.0
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 4.1e-132 474.9 274 83.9
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 5.3e-132 474.6 273 84.6
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 1.2e-131 473.4 274 84.3
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 1.2e-131 473.4 274 84.3
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 2.0e-131 472.6 274 83.9
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 2.6e-131 472.2 274 83.6
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 3.4e-131 471.9 274 83.6
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 3.4e-131 471.9 275 84.7
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 4.5e-131 471.5 274 84.3
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 4.5e-131 471.5 274 83.6
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 1.0e-130 470.3 274 84.7
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 1.0e-130 470.3 274 83.9
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 1.0e-130 470.3 274 83.9
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 1.3e-130 469.9 271 84.1
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 5.0e-130 468.0 274 82.8
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 8.5e-130 467.2 274 84.3
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 8.5e-130 467.2 272 83.8
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 1.1e-129 466.8 274 82.8
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.4e-129 466.5 274 82.8
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 1.4e-129 466.5 274 83.2
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 1.4e-129 466.5 274 84.7
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 4.2e-129 464.9 274 82.5
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 7.2e-129 464.2 274 82.5
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 1.2e-128 463.4 274 82.5
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 3.6e-128 461.8 274 82.1
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 4.6e-128 461.5 274 82.1
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 4.6e-128 461.5 274 81.8
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 6.1e-128 461.1 274 82.1
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 6.1e-128 461.1 274 82.1
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 6.1e-128 461.1 274 82.8
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 7.9e-128 460.7 273 82.8
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 7.9e-128 460.7 274 81.8
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 1.0e-127 460.3 274 80.7
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 1.0e-127 460.3 274 81.8
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.4e-127 459.9 274 81.0
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.4e-127 459.9 274 82.1
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.4e-127 459.9 274 82.1
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 1.8e-127 459.5 274 80.7
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 1.8e-127 459.5 274 82.1
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 2.3e-127 459.1 307 75.9
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 3.0e-127 458.8 274 81.4
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 3.9e-127 458.4 274 82.1
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 3.9e-127 458.4 274 81.4
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 5.1e-127 458.0 274 80.7
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.1e-127 458.0 274 80.7
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 1.1e-126 456.8 274 79.9
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 1.5e-126 456.4 274 81.4
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 1.5e-126 456.4 274 80.7
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 2.0e-126 456.1 274 79.9
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 2.0e-126 456.1 274 80.3
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 2.6e-126 455.7 286 78.0
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 2.6e-126 455.7 274 81.0
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 7.4e-126 454.1 274 80.7
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.7e-126 453.8 280 79.3
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 1.3e-125 453.4 274 79.6
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 1.3e-125 453.4 268 81.7
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 1.7e-125 453.0 274 82.5
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-125 453.0 274 79.6
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-125 453.0 280 79.3
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 2.8e-125 452.2 274 81.0
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.8e-125 451.4 280 78.9
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 6.3e-125 451.1 274 79.6
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 6.3e-125 451.1 274 79.9
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 1.8e-124 449.5 274 79.9
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 1.5e-123 446.4 274 79.6
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 1.5e-123 446.4 272 79.0
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 2.0e-123 446.0 274 79.2
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 2.0e-123 446.0 274 79.6
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 2.6e-123 445.7 272 78.7
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 2.6e-123 445.7 272 79.4
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.7e-123 444.1 274 78.8
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 1.7e-122 443.0 290 75.2
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 2.9e-122 442.2 273 78.4
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 5.0e-122 441.4 274 76.6
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 6.5e-122 441.0 274 76.6
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 8.5e-122 440.7 274 78.5
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 1.9e-121 439.5 274 76.6
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 1.9e-121 439.5 274 79.6
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 5.5e-121 438.0 274 76.6
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 9.4e-121 437.2 274 77.7
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 1.2e-120 436.8 274 79.9
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 3.6e-120 435.3 274 78.1
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 4.7e-120 434.9 274 75.9
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 3.9e-119 431.8 274 75.9
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 6.7e-119 431.0 274 77.7
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 2.0e-118 429.5 257 82.5
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 2.0e-118 429.5 270 75.6
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 1.3e-117 426.8 249 85.1
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.7e-117 426.4 274 77.0
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 3.7e-117 425.2 274 76.6
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 1.4e-116 423.3 272 77.2
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.8e-116 422.9 280 76.8
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 2.4e-116 422.5 274 77.0
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 5.3e-116 421.4 274 77.4
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 9.1e-116 420.6 274 74.1
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 3.5e-115 418.7 274 77.0
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 4.5e-115 418.3 270 77.4
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 1.3e-114 416.8 274 76.6
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 2.9e-114 415.6 274 75.9
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.9e-114 415.6 274 75.2
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 3.8e-114 415.2 274 72.6
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 1.5e-113 413.3 274 74.8
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 3.2e-113 412.1 274 75.2
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 4.2e-113 411.8 273 73.3
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 7.2e-113 411.0 274 76.3
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 9.4e-113 410.6 268 73.5
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 3.6e-112 408.7 273 71.4
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 6.1e-112 407.9 274 74.5
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.0e-112 407.5 274 74.1
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 1.8e-111 406.4 274 70.8
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 4.8e-109 398.3 274 72.6
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 3.1e-108 395.6 274 73.7
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.0e-108 394.4 281 68.7
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.0e-107 392.9 275 70.2
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.0e-107 392.9 275 70.2
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.0e-107 392.9 276 69.6
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.7e-107 392.5 281 69.0
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 3.5e-107 392.1 276 69.6
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 7.7e-107 391.0 274 70.1
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.3e-106 390.2 276 69.2
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.7e-106 389.8 277 74.0
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-106 389.8 281 68.7
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 2.2e-106 389.4 274 67.2
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 5.0e-106 388.3 274 70.1
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 1.5e-105 386.7 271 66.8
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 1.2e-104 383.6 274 66.4
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 2.7e-104 382.5 240 77.1
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 2.7e-104 382.5 273 65.6
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 6.1e-104 381.3 275 65.8
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 6.1e-104 381.3 275 66.2
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 4.0e-103 378.6 241 77.6
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 1.8e-100 369.8 275 65.5
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 1.2e-99 367.1 276 66.7
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 2.0e-99 366.3 215 85.1
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 3.5e-99 365.5 217 83.9
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 3.5e-99 365.5 275 65.1
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 5.0e-98 361.7 276 64.9
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 4.9e-93 345.1 253 64.8
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 6.6e-90 334.7 222 77.0
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.1e-89 334.0 202 82.2
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 1.5e-89 333.6 295 58.3
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 5.7e-86 321.6 192 83.3
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.4e-84 316.2 194 78.9
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 1.7e-77 293.5 273 54.2
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 2.6e-62 243.0 190 65.3
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 1.3e-61 240.7 143 80.4
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.2e-56 224.2 182 64.8
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 5.8e-54 215.3 276 42.8
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-53 213.8 138 75.4
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 1.9e-52 210.3 189 62.4
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 1.1e-49 201.1 138 71.7
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 2.4e-47 193.4 272 40.4
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 6.4e-45 185.3 274 42.0
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 8.4e-37 158.3 285 36.1
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 5.5e-36 155.6 129 63.6
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 3.0e-34 149.8 82 86.6
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 6.7e-34 148.7 84 82.1
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 1.1e-33 147.9 109 69.7
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 6.9e-31 138.7 76 86.8
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 5.1e-26 122.5 69 81.2
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 1.4e-23 114.4 108 53.7
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 6.9e-23 112.1 68 76.5
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 1.2e-19 101.3 68 64.7
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 6.3e-16 89.0 85 52.9
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 4.5e-14 82.8 50 74.0
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 4.5e-14 82.8 50 74.0
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 4.5e-14 82.8 55 74.5
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 5.5e-12 75.9 69 58.0
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 3.3e-09 66.6 61 59.0
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 5.7e-09 65.9 61 57.4


User provided reference genes

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