Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 2209.9 1097 100.0
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1886.3 1118 83.4
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1761.9 1116 78.3
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1753.8 1162 78.9
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1742.2 1076 79.6
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1730.7 1119 77.3
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1730.3 1123 76.8
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1729.9 1127 77.2
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1729.9 1127 76.6
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1728.0 1123 76.8
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1725.7 1136 76.2
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1724.9 1124 76.2
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1723.4 1122 76.9
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1721.8 1129 76.7
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1719.1 1127 76.1
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1716.0 1123 76.2
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1716.0 1128 76.6
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1714.5 1126 76.1
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1713.0 1122 75.5
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1712.2 1128 76.5
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1710.7 1074 77.9
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1710.7 1123 76.0
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1709.5 1128 75.3
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1708.7 1122 75.1
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1708.7 1123 75.4
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1706.8 1118 76.2
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1704.1 1128 75.0
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1703.7 1118 75.6
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1703.3 1124 75.4
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1702.6 1119 75.3
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1702.2 1121 75.6
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1702.2 1123 75.3
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1701.8 1126 74.8
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1701.0 1127 75.7
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1700.3 1126 75.7
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1699.1 1125 75.7
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1699.1 1127 74.5
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1698.7 1123 75.2
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1697.6 1121 75.6
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1697.6 1124 75.9
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1695.2 1128 74.9
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1694.5 1125 75.0
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1693.3 1127 75.2
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1692.9 1116 75.2
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1692.6 1138 75.0
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1692.2 1183 72.9
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1690.6 1119 74.6
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1690.2 1149 73.0
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1688.3 1125 74.6
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1688.3 1141 74.4
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1682.9 1127 74.2
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1682.5 1129 74.0
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1680.2 1124 75.4
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1679.8 1124 75.4
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1676.0 1120 74.2
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1673.3 1118 74.3
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1672.9 1124 74.4
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1666.0 1123 74.1
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1663.7 1080 76.1
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1660.6 1124 73.1
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1654.0 1116 74.1
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1644.4 1117 73.1
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1642.1 1118 73.3
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1638.2 1165 71.5
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1635.2 1187 70.1
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1631.3 1199 69.6
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1629.0 1116 72.2
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1627.1 1115 72.6
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1617.8 1107 72.7
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1612.4 1036 76.7
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1610.9 1070 75.5
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1605.9 1118 72.4
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1597.4 1121 71.1
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1597.0 1318 64.9
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1592.0 1119 70.8
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1579.3 1119 70.3
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1578.1 1248 67.2
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1572.8 1119 70.2
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1566.6 1117 69.9
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1561.2 1147 70.4
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1560.0 1119 70.0
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1559.3 1119 69.9
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1551.6 1146 68.8
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1538.9 1119 69.3
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1537.7 1119 69.3
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1535.0 1121 70.4
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1531.2 1164 69.2
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1489.6 1157 65.7
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1470.7 1119 65.9
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1470.3 1118 66.2
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1468.4 1112 67.4
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1466.4 864 82.9
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1460.7 1119 65.3
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1456.4 931 77.6
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1389.4 1084 66.1
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1375.5 838 80.1
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1373.2 834 80.2
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1317.0 980 69.9
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1295.4 858 74.2
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1206.4 1103 58.7
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1163.7 813 70.0
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1156.4 782 73.1
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1081.2 685 78.5
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1075.5 1146 49.7
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.2e-301 1039.3 731 73.5
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 2.6e-294 1015.8 1116 49.6
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 1.7e-293 1013.1 1506 42.0
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 7.7e-283 977.6 1157 46.3
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 5.0e-266 921.8 1145 44.5
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 2.8e-256 889.4 1399 37.8
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 3.1e-255 885.9 668 64.5
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 2.7e-243 846.3 670 64.8
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.6e-243 845.5 585 73.2
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 2.9e-229 799.7 524 77.3
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 3.9e-202 709.5 451 75.6
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 1.6e-200 704.1 568 63.9
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 4.4e-185 652.9 434 76.3
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 1.6e-179 634.4 420 70.0
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 4.0e-178 629.8 590 54.1
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 6.4e-144 516.2 378 74.3
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 2.3e-138 497.7 455 58.7
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 3.0e-133 480.7 307 76.9
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 3.1e-106 391.0 1219 28.1
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 1.2e-105 389.0 304 69.7
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 2.1e-91 341.7 770 32.5
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 1.5e-81 308.9 1459 22.1
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 3.9e-77 294.3 196 73.5
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 3.3e-76 291.2 190 74.2
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 7.2e-71 273.5 206 68.4
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 2.7e-70 271.6 297 50.2
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 4.5e-65 254.2 198 71.2
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 4.5e-65 254.2 296 51.4
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 5.0e-64 250.8 229 62.4
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 1.2e-60 239.6 317 39.7
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 5.7e-60 237.3 185 61.6
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.2e-52 213.0 212 55.2
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 6.3e-51 207.2 588 30.8
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.3e-45 188.7 258 43.4
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 8.3e-43 180.3 167 61.7
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 5.4e-42 177.6 348 38.8
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 1.3e-40 172.9 153 64.1
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 2.8e-38 165.2 169 50.9
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 3.0e-32 145.2 706 22.5
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 5.0e-32 144.4 183 48.1
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 4.1e-26 124.8 85 65.9
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 2.1e-22 112.5 164 41.5
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 6.2e-22 110.9 64 79.7
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 5.8e-20 104.4 74 66.2
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 1.9e-18 99.4 67 65.7
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 2.4e-18 99.0 85 64.7
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 3.2e-18 98.6 161 37.9
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.6e-17 94.7 138 44.9
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 1.0e-16 93.6 87 59.8
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 2.3e-16 92.4 60 76.7
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 8.6e-16 90.5 91 56.0
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 1.9e-15 89.4 64 70.3
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 9.5e-15 87.0 80 60.0
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.1e-14 85.9 83 61.4
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 3.6e-14 85.1 44 84.1
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 8.1e-14 84.0 56 71.4
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 3.1e-13 82.0 95 46.3
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 4.4e-12 78.2 49 77.6
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.2e-11 75.9 44 77.3
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 1.9e-10 72.8 55 60.0
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 2.4e-10 72.4 59 62.7
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 1.3e-08 66.6 34 79.4
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 2.1e-06 59.3 40 62.5
A07p25530 Brassica napus HOM05D004297 ORTHO05D098686 3.6e-06 58.5 58 55.2


User provided reference genes

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