Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00367 Beta vulgaris HOM05D005821 ORTHO05D006649 3.9e-240 834.3 410 100.0
AUR62022607 Chenopodium quinoa HOM05D005821 ORTHO05D006649 1.9e-165 586.3 410 73.4
Ah.05g180240 Amaranthus hybridus HOM05D005821 ORTHO05D006649 7.4e-162 574.3 412 70.9
AUR62004401 Chenopodium quinoa HOM05D005821 ORTHO05D006649 7.6e-159 564.3 392 73.7
Hund16670 Selenicereus undatus HOM05D005821 ORTHO05D006649 3.8e-150 535.4 421 66.7
Atru.chr5.549 Acer truncatum HOM05D005821 ORTHO05D006649 1.5e-143 513.5 389 65.8
TWI59G0254 Tripterygium wilfordii HOM05D005821 ORTHO05D006649 2.6e-143 512.7 396 65.7
Thecc.01G354000 Theobroma cacao HOM05D005821 ORTHO05D006649 1.9e-141 506.5 395 63.8
Prupe.2G175700 Prunus persica HOM05D005821 ORTHO05D006649 3.2e-141 505.8 412 62.6
Sp4g28150 Schrenkiella parvula HOM05D005821 ORTHO05D006649 3.6e-140 502.3 377 66.6
Cfa003883 Carpinus fangiana HOM05D005821 ORTHO05D006649 4.6e-140 501.9 406 62.8
Gohir.D08G153700 Gossypium hirsutum HOM05D005821 ORTHO05D006649 7.9e-140 501.1 380 65.0
CiPaw.01G065500 Carya illinoinensis HOM05D005821 ORTHO05D006649 1.0e-139 500.7 387 65.1
MSTRG.20856 Avicennia marina HOM05D005821 ORTHO05D006649 5.1e-139 498.4 406 63.8
Medtr7g079020 Medicago truncatula HOM05D005821 ORTHO05D006649 6.7e-139 498.0 397 62.2
Carub.0004s2879 Capsella rubella HOM05D005821 ORTHO05D006649 8.8e-139 497.7 373 66.2
Migut.B01789 Erythranthe guttata HOM05D005821 ORTHO05D006649 8.8e-139 497.7 402 63.4
Gohir.A08G132300 Gossypium hirsutum HOM05D005821 ORTHO05D006649 8.8e-139 497.7 380 64.2
Ciclev10020792m.g Citrus clementina HOM05D005821 ORTHO05D006649 1.1e-138 497.3 375 67.2
Gorai.004G159600 Gossypium raimondii HOM05D005821 ORTHO05D006649 1.5e-138 496.9 380 65.0
CARHR141350 Cardamine hirsuta HOM05D005821 ORTHO05D006649 2.0e-138 496.5 371 65.2
Thhalv10001507m.g Eutrema salsugineum HOM05D005821 ORTHO05D006649 2.0e-138 496.5 377 65.3
Glyma.09G254500 Glycine max HOM05D005821 ORTHO05D006649 2.5e-138 496.1 405 63.5
Eucgr.D02318 Eucalyptus grandis HOM05D005821 ORTHO05D006649 3.3e-138 495.7 402 61.9
Manes.01G253300 Manihot esculenta HOM05D005821 ORTHO05D006649 5.7e-138 495.0 381 65.4
Psat3g105200 Pisum sativum HOM05D005821 ORTHO05D006649 5.7e-138 495.0 405 59.8
RcHm_v2.0_Chr1g0357291 Rosa chinensis HOM05D005821 ORTHO05D006649 5.7e-138 495.0 400 62.0
VMungo1383G1209 Vigna mungo HOM05D005821 ORTHO05D006649 7.4e-138 494.6 388 63.9
FvH4_7g15100 Fragaria vesca HOM05D005821 ORTHO05D006649 9.7e-138 494.2 391 62.7
Lj9A587T97 Lonicera japonica HOM05D005821 ORTHO05D006649 9.7e-138 494.2 413 62.0
A05p06050 Brassica napus HOM05D005821 ORTHO05D006649 1.7e-137 493.4 381 64.3
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 2.2e-137 493.0 382 62.8
Haze_15551 Corylus avellana HOM05D005821 ORTHO05D006649 2.2e-137 493.0 412 61.4
FAN10G3455 Fragaria x ananassa HOM05D005821 ORTHO05D006649 2.2e-137 493.0 391 62.7
AL4G45320 Arabidopsis lyrata HOM05D005821 ORTHO05D006649 2.8e-137 492.7 371 65.5
Dinv43854 Davidia involucrata HOM05D005821 ORTHO05D006649 2.8e-137 492.7 395 63.0
MD01G1069600 Malus domestica HOM05D005821 ORTHO05D006649 3.7e-137 492.3 410 61.5
TAR375G0805 Trochodendron aralioides HOM05D005821 ORTHO05D006649 3.7e-137 492.3 391 63.7
Phvul.008G058100 Phaseolus vulgaris HOM05D005821 ORTHO05D006649 4.8e-137 491.9 388 63.7
MD07G1132800 Malus domestica HOM05D005821 ORTHO05D006649 8.2e-137 491.1 410 61.0
Peaxi162Scf00020g01233 Petunia axillaris HOM05D005821 ORTHO05D006649 8.2e-137 491.1 409 62.3
QL04p055074 Quercus lobata HOM05D005821 ORTHO05D006649 1.1e-136 490.7 371 66.0
Actinidia10061 Actinidia chinensis HOM05D005821 ORTHO05D006649 1.4e-136 490.3 393 63.6
Lj1g0010902 Lotus japonicus HOM05D005821 ORTHO05D006649 1.4e-136 490.3 392 63.3
TPR.G35791 Trifolium pratense HOM05D005821 ORTHO05D006649 1.4e-136 490.3 405 60.2
MBI11_g09064_MAGBIO Magnolia biondii HOM05D005821 ORTHO05D006649 1.8e-136 490.0 410 61.0
Sabra02G0147600 Salix brachista HOM05D005821 ORTHO05D006649 1.8e-136 490.0 403 62.8
GSVIVG01027007001 Vitis vinifera HOM05D005821 ORTHO05D006649 2.4e-136 489.6 396 62.6
CANSAT56G3247 Cannabis sativa HOM05D005821 ORTHO05D006649 3.1e-136 489.2 412 60.7
Cpa.g.sc184.24 Carica papaya HOM05D005821 ORTHO05D006649 5.3e-136 488.4 389 63.0
THA.LOC104817314 Tarenaya hassleriana HOM05D005821 ORTHO05D006649 6.9e-136 488.0 408 59.6
ECA240G2396 Erigeron canadensis HOM05D005821 ORTHO05D006649 9.1e-136 487.6 394 61.7
Potri.002G162900 Populus trichocarpa HOM05D005821 ORTHO05D006649 1.2e-135 487.3 398 62.6
Glyma.18G238500 Glycine max HOM05D005821 ORTHO05D006649 1.5e-135 486.9 389 64.0
PGR031G3922 Punica granatum HOM05D005821 ORTHO05D006649 1.5e-135 486.9 399 61.4
SGA_v2.0_scaffold4G02290 Striga asiatica HOM05D005821 ORTHO05D006649 2.0e-135 486.5 404 62.6
AT2G46090 Arabidopsis thaliana HOM05D005821 ORTHO05D006649 2.9e-134 482.6 373 63.8
ClCG06G003440 Citrullus lanatus HOM05D005821 ORTHO05D006649 3.8e-134 482.3 399 61.2
BraA05t19569Z Brassica rapa HOM05D005821 ORTHO05D006649 8.5e-134 481.1 370 65.1
Nitab4.5_0000915g0180 Nicotiana tabacum HOM05D005821 ORTHO05D006649 8.5e-134 481.1 374 64.2
SalBow3G0996 Salvia bowleyana HOM05D005821 ORTHO05D006649 1.4e-133 480.3 431 58.7
Sopen01g038790 Solanum pennellii HOM05D005821 ORTHO05D006649 4.2e-133 478.8 374 63.4
Solyc01g095010.4 Solanum lycopersicum HOM05D005821 ORTHO05D006649 1.2e-132 477.2 374 63.1
PGSC0003DMG400000188 Solanum tuberosum HOM05D005821 ORTHO05D006649 1.2e-132 477.2 374 63.4
Cc02_g38430 Coffea canephora HOM05D005821 ORTHO05D006649 1.6e-132 476.9 375 63.2
Nitab4.5_0010703g0020 Nicotiana tabacum HOM05D005821 ORTHO05D006649 1.6e-132 476.9 374 63.4
CsaV3_6G000870 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.7e-132 476.1 381 61.9
Lsat_1_v5_gn_3_138360 Lactuca sativa HOM05D005821 ORTHO05D006649 2.7e-132 476.1 386 61.1
A04p34280 Brassica napus HOM05D005821 ORTHO05D006649 1.8e-131 473.4 393 61.3
Nn1g01648 Nelumbo nucifera HOM05D005821 ORTHO05D006649 1.8e-131 473.4 395 59.7
DCAR_008630 Daucus carota HOM05D005821 ORTHO05D006649 8.8e-131 471.1 415 58.3
Lalb_Chr17g0339001 Lupinus albus HOM05D005821 ORTHO05D006649 1.1e-130 470.7 403 60.0
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 1.5e-130 470.3 391 61.4
Aqoxy7G00301 Aquilegia oxysepala HOM05D005821 ORTHO05D006649 3.3e-130 469.2 412 58.0
Rhsim07G0011400 Rhododendron simsii HOM05D005821 ORTHO05D006649 3.3e-130 469.2 419 58.7
PSO782G2463 Papaver somniferum HOM05D005821 ORTHO05D006649 4.4e-130 468.8 389 58.9
Sed0010880 Sechium edule HOM05D005821 ORTHO05D006649 2.2e-129 466.5 399 59.6
HanXRQChr06g0167001 Helianthus annuus HOM05D005821 ORTHO05D006649 3.7e-129 465.7 374 61.5
arahy.Tifrunner.gnm1.ann1.01GDC8 Arachis hypogaea HOM05D005821 ORTHO05D006649 1.4e-128 463.8 374 61.8
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 3.1e-128 462.6 388 62.1
arahy.Tifrunner.gnm1.ann1.WE10J5 Arachis hypogaea HOM05D005821 ORTHO05D006649 5.3e-128 461.8 374 61.5
CSS0033562 Camellia sinensis var. sinensis HOM05D005821 ORTHO05D006649 7.0e-128 461.5 415 58.8
FAN01G0645 Fragaria x ananassa HOM05D005821 ORTHO05D006649 7.0e-128 461.5 363 62.3
TAR374G1257 Trochodendron aralioides HOM05D005821 ORTHO05D006649 7.0e-128 461.5 416 58.4
vmacro13240 Vaccinium macrocarpon HOM05D005821 ORTHO05D006649 7.0e-128 461.5 400 60.8
Sc23g0002630 Simmondsia chinensis HOM05D005821 ORTHO05D006649 1.9e-125 453.4 368 63.9
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 1.4e-123 447.2 421 57.5
ATR0661G113 Amborella trichopoda HOM05D005821 ORTHO05D006649 8.8e-123 444.5 422 55.7
CDE06G2338 Ceratophyllum demersum HOM05D005821 ORTHO05D006649 1.7e-121 440.3 411 55.2
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 2.2e-121 439.9 376 60.4
Zm00001eb001870 Zea mays HOM05D005821 ORTHO05D006649 6.3e-121 438.3 388 55.7
SEGI_25270 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 6.1e-116 421.8 378 56.6
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 8.0e-116 421.4 405 55.6
SGA_v2.0_scaffold95G28815 Striga asiatica HOM05D005821 ORTHO05D006649 3.0e-115 419.5 405 56.0
Os03g0125400 Oryza sativa ssp. japonica HOM05D005821 ORTHO05D006649 4.4e-114 415.6 386 52.6
HPP92_025636 Vanilla planifolia HOM05D005821 ORTHO05D006649 5.7e-114 415.2 378 55.3
MELO3C021184.2 Cucumis melo HOM05D005821 ORTHO05D006649 4.8e-113 412.1 339 60.5
CAN.G78.118 Capsicum annuum HOM05D005821 ORTHO05D006649 3.1e-112 409.5 330 61.5
Oeu015222.1 Olea europaea HOM05D005821 ORTHO05D006649 3.1e-112 409.5 406 54.7
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 6.1e-108 395.2 361 57.9
COL.COLO4_12763 Corchorus olitorius HOM05D005821 ORTHO05D006649 1.0e-107 394.4 317 63.7
Hma1.2p1_2961F.1_g330850 Hydrangea macrophylla HOM05D005821 ORTHO05D006649 1.3e-105 387.5 426 50.5
Duzib138G1618 Durio zibethinus HOM05D005821 ORTHO05D006649 1.3e-102 377.5 396 52.5
Mapoly0047s0043 Marchantia polymorpha HOM05D005821 ORTHO05D006649 3.3e-101 372.9 383 49.9
SEGI_00842 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 1.0e-91 341.3 318 55.0
Actinidia20151 Actinidia chinensis HOM05D005821 ORTHO05D006649 1.6e-87 327.4 270 60.0
Pp3c4_15190 Physcomitrium patens HOM05D005821 ORTHO05D006649 9.8e-82 308.1 355 45.9
CsaV3_7G024010 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.2e-79 301.2 273 55.7
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 4.9e-73 279.3 213 65.7
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 5.2e-67 259.2 260 52.7
Pp3c3_23640 Physcomitrium patens HOM05D005821 ORTHO05D006649 5.1e-62 242.7 221 56.6
arahy.Tifrunner.gnm1.ann1.88DVKJ Arachis hypogaea HOM05D005821 ORTHO05D006649 7.1e-56 222.2 257 46.7
CsaV3_7G023670 Cucumis sativus L. HOM05D005821 ORTHO05D006649 7.4e-45 185.7 236 43.6
AagrBONN_evm.TU.Sc2ySwM_228.2927 Anthoceros agrestis HOM05D005821 ORTHO05D006649 2.6e-42 177.2 214 42.1
TAR374G0886 Trochodendron aralioides HOM05D005821 ORTHO05D006649 2.5e-40 170.6 199 47.2
CsaV3_UNG070590 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.1e-39 167.5 171 50.9
CsaV3_UNG139080 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.7e-39 167.2 170 51.2
CsaV3_3G018770 Cucumis sativus L. HOM05D005821 ORTHO05D006649 6.0e-39 166.0 171 50.3
MSTRG.28231 Avicennia marina HOM05D005821 ORTHO05D006649 2.2e-33 147.5 162 48.8
BcaC07g41755 Brassica carinata HOM05D001218 ORTHO05D003142 2.5e-29 134.0 77 79.2
PSO349G0068 Papaver somniferum HOM05D000127 ORTHO05D006649 3.3e-29 133.7 96 58.3
PRCOL_00004349 Prasinoderma coloniale HOM05D005821 ORTHO05D006649 2.8e-28 130.6 440 24.3
CsaV3_UNG069570 Cucumis sativus L. HOM05D005821 ORTHO05D006649 3.1e-27 127.1 78 73.1
SMO011G0016 Selaginella moellendorffii HOM05D005821 ORTHO05D006649 1.9e-24 117.9 185 36.2
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 1.1e-21 108.6 250 33.6
SGA_v2.0_scaffold399G50806 Striga asiatica HOM05D005821 ORTHO05D006649 1.1e-19 102.1 66 69.7
Gorai.004G111600 Gossypium raimondii HOM05D005821 ORTHO05D029888 4.1e-19 100.1 83 62.7
CsaV3_UNG082640 Cucumis sativus L. HOM05D005821 ORTHO05D006649 5.0e-17 93.2 120 44.2
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 1.1e-16 92.0 251 27.9
C04p71120 Brassica napus HOM05D000113 ORTHO05D001353 9.4e-16 89.0 67 65.7
MBI14_g39032_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.1e-11 73.9 71 53.5
CAN.G517.26 Capsicum annuum HOM05D005821 ORTHO05D006649 7.7e-10 69.3 53 54.7
Pp3c1_15060 Physcomitrium patens HOM05D004444 ORTHO05D005246 1.1e-08 65.5 187 29.4
CsaV3_4G038020 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.9e-08 64.7 36 75.0
CsaV3_UNG040220 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.9e-08 64.7 36 75.0
Thecc.03G089300 Theobroma cacao HOM05D005821 ORTHO05D006649 2.5e-08 64.3 40 65.0
SGA_v2.0_scaffold63G21843 Striga asiatica HOM05D002903 ORTHO05D003066 1.6e-07 61.6 44 59.1
SEGI_02431 Sequoiadendron giganteum HOM05D004444 ORTHO05D005246 2.7e-07 60.8 188 25.5
Cre10.g448650 Chlamydomonas reinhardtii HOM05D005821 ORTHO05D006649 4.7e-07 60.1 148 28.4
CsaV3_2G000040 Cucumis sativus L. HOM05D001245 ORTHO05D004475 4.7e-07 60.1 65 46.2
Dinv15321 Davidia involucrata HOM05D005821 ORTHO05D006649 6.1e-07 59.7 51 62.7
unitig_61.g26366 Utricularia gibba HOM05D004444 ORTHO05D005246 8.0e-07 59.3 142 27.5
MSTRG.5072 Avicennia marina HOM05D004444 ORTHO05D005246 1.0e-06 58.9 147 29.3
TPR.G25204 Trifolium pratense HOM05D004444 ORTHO05D005246 1.0e-06 58.9 194 25.8
CANSAT78G1818 Cannabis sativa HOM05D004444 ORTHO05D005246 1.8e-06 58.2 200 24.5
CDE11G0399 Ceratophyllum demersum HOM05D004444 ORTHO05D005246 1.8e-06 58.2 186 27.4
Cre09.g393691 Chlamydomonas reinhardtii HOM05D006112 ORTHO05D007898 1.8e-06 58.2 204 27.0
Medtr6g004070 Medicago truncatula HOM05D004444 ORTHO05D005246 1.8e-06 58.2 194 25.8
Pp3c2_22010 Physcomitrium patens HOM05D004444 ORTHO05D005246 2.3e-06 57.8 192 29.7
Psat1g052480 Pisum sativum HOM05D004444 ORTHO05D005246 2.3e-06 57.8 194 25.8
vmacro18720 Vaccinium macrocarpon HOM05D004444 ORTHO05D005246 3.0e-06 57.4 164 27.4
BcaC05g29489 Brassica carinata HOM05D005821 ORTHO05D006649 4.0e-06 57.0 43 58.1
Glyma.05G000200 Glycine max HOM05D004444 ORTHO05D005246 4.0e-06 57.0 193 24.9
Glyma.19G000300 Glycine max HOM05D004444 ORTHO05D005246 4.0e-06 57.0 193 24.9
MBI12_g01745_MAGBIO Magnolia biondii HOM05D004444 ORTHO05D005246 4.0e-06 57.0 193 25.4
Lj2g0009416 Lotus japonicus HOM05D004444 ORTHO05D005246 5.2e-06 56.6 215 24.7
Manes.11G000400 Manihot esculenta HOM05D004444 ORTHO05D005246 5.2e-06 56.6 223 23.8
Peaxi162Scf00082g00116 Petunia axillaris HOM05D004444 ORTHO05D005246 6.7e-06 56.2 209 25.4
RcHm_v2.0_Chr4g0447291 Rosa chinensis HOM05D004444 ORTHO05D005246 6.7e-06 56.2 223 23.3
Rhsim02G0256600 Rhododendron simsii HOM05D004444 ORTHO05D005246 8.8e-06 55.8 160 26.9
SalBow6G5617 Salvia bowleyana HOM05D004444 ORTHO05D005246 8.8e-06 55.8 142 26.1


User provided reference genes

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