Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 1.3e-166 589.7 306 100.0
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 7.5e-119 431.0 304 75.7
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 6.0e-116 421.4 304 74.3
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 8.1e-105 384.4 304 68.8
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 2.1e-97 359.8 308 64.0
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 3.9e-91 339.0 309 62.1
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 3.9e-91 339.0 310 61.3
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 1.5e-90 337.0 309 60.2
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 3.3e-90 335.9 308 61.4
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 2.1e-89 333.2 308 60.7
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 2.8e-89 332.8 309 59.5
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 2.8e-89 332.8 305 59.3
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 3.6e-89 332.4 306 61.4
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 4.7e-89 332.0 313 59.1
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 6.2e-89 331.6 310 61.6
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 1.4e-88 330.5 305 58.0
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 2.4e-88 329.7 311 58.8
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 2.4e-88 329.7 308 59.1
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 3.1e-88 329.3 307 59.9
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 4.0e-88 328.9 314 59.2
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 6.9e-88 328.2 309 59.2
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 1.2e-87 327.4 312 60.6
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.5e-87 327.0 309 59.5
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 2.0e-87 326.6 309 58.6
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 2.6e-87 326.2 304 60.9
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 2.6e-87 326.2 310 59.7
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 3.4e-87 325.9 312 59.6
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 3.4e-87 325.9 313 60.4
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 4.4e-87 325.5 309 59.5
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 4.4e-87 325.5 309 58.9
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 9.9e-87 324.3 315 59.0
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 1.7e-86 323.6 309 58.9
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 1.7e-86 323.6 316 58.2
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 2.2e-86 323.2 314 58.0
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 2.9e-86 322.8 315 59.0
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 2.9e-86 322.8 306 58.5
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 3.8e-86 322.4 307 59.6
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 6.4e-86 321.6 313 59.4
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 8.4e-86 321.2 311 57.9
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 8.4e-86 321.2 314 58.9
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 1.1e-85 320.9 314 57.6
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 1.4e-85 320.5 309 57.9
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 1.9e-85 320.1 310 59.7
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 1.9e-85 320.1 306 57.2
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 4.2e-85 318.9 308 58.8
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 4.2e-85 318.9 299 58.5
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 5.4e-85 318.5 310 57.7
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 7.1e-85 318.2 309 58.6
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 2.1e-84 316.6 305 58.0
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 2.7e-84 316.2 309 56.6
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 2.7e-84 316.2 277 61.0
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 6.0e-84 315.1 315 58.4
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 1.3e-83 313.9 310 58.4
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 3.9e-83 312.4 303 57.4
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 6.6e-83 311.6 305 57.7
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 8.7e-83 311.2 309 55.7
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 8.7e-83 311.2 302 57.0
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 1.5e-82 310.5 303 57.4
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 1.5e-82 310.5 303 57.4
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 1.5e-82 310.5 312 57.7
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 1.9e-82 310.1 308 56.2
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 1.9e-82 310.1 303 57.8
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 2.5e-82 309.7 305 56.4
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 3.3e-82 309.3 320 57.5
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 5.6e-82 308.5 312 57.1
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 5.6e-82 308.5 308 56.8
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 5.6e-82 308.5 302 58.3
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 5.6e-82 308.5 309 57.6
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 5.6e-82 308.5 303 58.1
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 7.3e-82 308.1 312 57.1
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 7.3e-82 308.1 312 57.1
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 9.6e-82 307.8 306 56.5
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 9.6e-82 307.8 306 56.5
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 2.1e-81 306.6 306 56.5
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 3.6e-81 305.8 303 57.1
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 4.8e-81 305.4 303 57.1
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 1.4e-80 303.9 309 57.3
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 1.8e-80 303.5 313 56.9
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.0e-80 302.4 308 57.1
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.0e-80 302.4 308 57.1
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.0e-80 302.4 308 57.1
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 4.0e-80 302.4 307 57.0
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 6.9e-80 301.6 271 60.1
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 6.9e-80 301.6 309 57.3
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 6.9e-80 301.6 309 57.3
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 9.0e-80 301.2 308 56.8
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 2.0e-79 300.1 313 56.5
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 7.6e-79 298.1 305 56.4
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 9.9e-79 297.7 312 55.1
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 1.3e-78 297.4 283 60.1
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 2.4e-77 293.1 312 54.8
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 3.2e-77 292.7 294 57.1
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 3.2e-77 292.7 304 55.3
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 5.4e-77 292.0 294 57.1
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 1.2e-76 290.8 285 56.5
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 3.5e-76 289.3 178 78.1
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 1.8e-75 287.0 293 56.3
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 1.8e-75 287.0 293 56.3
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 1.1e-74 284.3 288 55.2
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 9.0e-72 274.6 260 58.1
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 3.8e-70 269.2 261 54.4
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 4.9e-70 268.9 307 52.4
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 1.4e-69 267.3 258 54.3
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 3.8e-62 242.7 310 49.0
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 1.1e-61 241.1 279 50.9
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 1.9e-61 240.4 295 47.5
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 3.2e-61 239.6 302 46.4
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 1.0e-59 234.6 251 48.2
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 4.3e-58 229.2 290 44.5
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 1.1e-56 224.6 311 45.7
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 4.1e-56 222.6 243 53.9
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 4.1e-56 222.6 243 53.9
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 2.2e-54 216.9 225 50.2
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.9e-54 216.5 240 52.9
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 1.4e-51 207.6 133 78.2
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 1.1e-50 204.5 222 57.2
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 1.1e-45 188.0 184 52.7
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 3.9e-43 179.5 152 55.3
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 7.7e-39 165.2 191 44.5
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 2.2e-38 163.7 107 73.8
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 3.1e-32 143.3 112 64.3
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 2.5e-29 133.7 305 34.8
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 2.5e-29 133.7 305 34.8
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 7.2e-29 132.1 305 34.4
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.8e-27 127.5 208 44.2
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 1.3e-25 121.3 86 72.1
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 9.1e-24 115.2 79 70.9
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.4e-19 101.3 70 67.1
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 1.8e-19 100.9 150 38.0
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 9.8e-18 95.1 77 62.3
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 9.1e-16 88.6 157 31.2
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 4.2e-13 79.7 54 68.5
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 1.8e-11 74.3 60 61.7
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 5.7e-10 69.3 39 82.1
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 5.4e-08 62.8 91 49.5
FvH4_5g19211 Fragaria vesca HOM05D006032 ORTHO05D197553 2.0e-07 60.8 42 78.6
Sc24g0002240 Simmondsia chinensis HOM05D006032 ORTHO05D007544 1.0e-06 58.5 52 57.7
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 6.6e-06 55.8 102 34.3


User provided reference genes

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