Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00365 Beta vulgaris HOM05D003611 ORTHO05D004281 0.0e+00 2020.4 1027 100.0
AUR62022609 Chenopodium quinoa HOM05D003611 ORTHO05D004281 0.0e+00 1379.0 1034 72.2
AUR62004403 Chenopodium quinoa HOM05D003611 ORTHO05D004281 0.0e+00 1368.2 1035 71.7
Hund16671 Selenicereus undatus HOM05D003611 ORTHO05D004281 2.7e-306 1055.4 1056 59.0
Hund27250 Selenicereus undatus HOM05D003611 ORTHO05D004281 1.8e-281 973.0 1035 54.9
Dinv43856 Davidia involucrata HOM05D003611 ORTHO05D004281 1.3e-228 797.3 1099 46.5
Sc23g0002620 Simmondsia chinensis HOM05D003611 ORTHO05D004281 4.8e-226 788.9 1051 48.1
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 2.5e-206 723.4 582 65.3
Cfa003881 Carpinus fangiana HOM05D003611 ORTHO05D004281 3.7e-202 709.5 1104 44.4
CiPaw.01G065700 Carya illinoinensis HOM05D003611 ORTHO05D004281 6.3e-202 708.8 1109 43.9
QL04p055101 Quercus lobata HOM05D003611 ORTHO05D004281 5.9e-200 702.2 1124 42.3
CSS0009973 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 1.2e-197 694.5 1097 43.8
Thecc.01G353800 Theobroma cacao HOM05D003611 ORTHO05D004281 1.1e-195 688.0 1109 43.7
CiPaw.02G033900 Carya illinoinensis HOM05D003611 ORTHO05D004281 3.7e-194 682.9 1082 42.7
Prupe.2G176000 Prunus persica HOM05D003611 ORTHO05D004281 6.9e-193 678.7 1111 42.6
COL.COLO4_12765 Corchorus olitorius HOM05D003611 ORTHO05D004281 1.7e-191 674.1 1111 42.8
CSS0038908 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 1.5e-187 661.0 1101 42.0
Ciclev10018621m.g Citrus clementina HOM05D003611 ORTHO05D004281 1.4e-185 654.4 1100 42.9
Potri.014G089200 Populus trichocarpa HOM05D003611 ORTHO05D004281 2.6e-184 650.2 1091 43.3
RcHm_v2.0_Chr1g0357311 Rosa chinensis HOM05D003611 ORTHO05D004281 3.5e-184 649.8 1114 42.1
Haze_15553 Corylus avellana HOM05D003611 ORTHO05D004281 8.5e-183 645.2 1072 42.5
Cc02_g38450 Coffea canephora HOM05D003611 ORTHO05D004281 1.1e-182 644.8 1090 42.2
Dinv32512 Davidia involucrata HOM05D003611 ORTHO05D004281 4.2e-182 642.9 969 43.9
Manes.05G030300 Manihot esculenta HOM05D003611 ORTHO05D004281 7.2e-182 642.1 1105 41.4
FAN10G4104 Fragaria x ananassa HOM05D003611 ORTHO05D004281 3.6e-181 639.8 1126 41.1
VMungo1383G2804 Vigna mungo HOM05D003611 ORTHO05D004281 4.7e-181 639.4 1094 41.7
FAN03G1353 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.8e-180 637.5 1128 41.0
FAN10G1370 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.8e-180 637.5 1126 40.9
Sc01g0003270 Simmondsia chinensis HOM05D003611 ORTHO05D004281 3.0e-180 636.7 964 44.0
Rhsim07G0011300 Rhododendron simsii HOM05D003611 ORTHO05D004281 5.2e-180 636.0 1124 41.4
Glyma.18G237600 Glycine max HOM05D003611 ORTHO05D004281 1.1e-179 634.8 1092 42.4
Potri.002G163000 Populus trichocarpa HOM05D003611 ORTHO05D004281 1.5e-179 634.4 1101 42.4
FvH4_7g15120 Fragaria vesca HOM05D003611 ORTHO05D004281 2.6e-179 633.6 1129 41.2
FAN06G4234 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.7e-178 630.9 1126 40.9
TWI14G0836 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 1.4e-177 627.9 1086 42.4
Sabra02G0147500 Salix brachista HOM05D003611 ORTHO05D004281 1.8e-177 627.5 1094 42.0
FAN06G0771 Fragaria x ananassa HOM05D003611 ORTHO05D004281 4.1e-177 626.3 1128 40.8
Glyma.09G255400 Glycine max HOM05D003611 ORTHO05D004281 1.3e-175 621.3 1097 41.6
Sabra14G0064800 Salix brachista HOM05D003611 ORTHO05D004281 1.3e-175 621.3 1091 41.4
Cpa.g.sc184.26 Carica papaya HOM05D003611 ORTHO05D004281 1.9e-174 617.5 1133 40.1
FAN01G0094 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.9e-174 617.5 1129 40.4
Nn1g01656 Nelumbo nucifera HOM05D003611 ORTHO05D004281 3.2e-174 616.7 1120 41.1
Gohir.A11G091600 Gossypium hirsutum HOM05D003611 ORTHO05D004281 1.2e-173 614.8 1123 41.4
Atru.chr5.552 Acer truncatum HOM05D003611 ORTHO05D004281 6.1e-173 612.5 1092 41.0
arahy.Tifrunner.gnm1.ann1.I9FVBP Arachis hypogaea HOM05D003611 ORTHO05D004281 6.1e-173 612.5 1074 41.5
Gohir.D11G096300 Gossypium hirsutum HOM05D003611 ORTHO05D004281 1.0e-172 611.7 1121 41.0
MD01G1069900 Malus domestica HOM05D003611 ORTHO05D004281 2.6e-171 607.1 1108 41.1
Gorai.007G102600 Gossypium raimondii HOM05D003611 ORTHO05D004281 9.8e-171 605.1 1142 40.0
Gorai.007G102800 Gossypium raimondii HOM05D003611 ORTHO05D004281 2.8e-170 603.6 1111 40.5
TAR375G0370 Trochodendron aralioides HOM05D003611 ORTHO05D004281 3.7e-170 603.2 1067 42.0
Gohir.D11G096500 Gossypium hirsutum HOM05D003611 ORTHO05D004281 4.1e-169 599.7 1104 40.6
Phvul.008G059100 Phaseolus vulgaris HOM05D003611 ORTHO05D004281 7.0e-169 599.0 1070 40.9
Duzib133G0517 Durio zibethinus HOM05D003611 ORTHO05D004281 2.0e-168 597.4 1110 39.5
Gohir.A11G091700 Gossypium hirsutum HOM05D003611 ORTHO05D004281 2.7e-168 597.0 1123 40.8
Lj7A508G38 Lonicera japonica HOM05D003611 ORTHO05D004281 2.2e-167 594.0 1096 41.6
TWI59G0398 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 8.0e-165 585.5 1073 39.9
Ca_00818_v3 Cicer arietinum L. HOM05D003611 ORTHO05D004281 2.3e-164 583.9 1085 39.6
PGR042G1491 Punica granatum HOM05D003611 ORTHO05D004281 1.7e-162 577.8 1092 40.9
Eucgr.E00101 Eucalyptus grandis HOM05D003611 ORTHO05D004281 4.9e-162 576.2 1099 39.7
Lj1g0014988 Lotus japonicus HOM05D003611 ORTHO05D004281 2.4e-161 573.9 1091 40.3
Medtr7g078820 Medicago truncatula HOM05D003611 ORTHO05D004281 1.6e-160 571.2 1092 39.3
Actinidia18539 Actinidia chinensis HOM05D003611 ORTHO05D004281 2.7e-160 570.5 1112 39.5
Manes.01G253100 Manihot esculenta HOM05D003611 ORTHO05D004281 1.1e-158 565.1 1054 39.7
CANSAT56G4470 Cannabis sativa HOM05D003611 ORTHO05D004281 2.5e-158 563.9 1097 40.2
GSVIVG01026955001 Vitis vinifera HOM05D003611 ORTHO05D004281 4.3e-158 563.1 1081 39.1
MD07G1132600 Malus domestica HOM05D003611 ORTHO05D004281 5.2e-156 556.2 1084 38.9
arahy.Tifrunner.gnm1.ann1.9C73IW Arachis hypogaea HOM05D003611 ORTHO05D004281 6.8e-156 555.8 1063 39.7
Peaxi162Scf00020g01228 Petunia axillaris HOM05D003611 ORTHO05D004281 8.9e-156 555.4 1089 39.9
vmacro13239 Vaccinium macrocarpon HOM05D003611 ORTHO05D004281 3.4e-155 553.5 1228 37.4
Nitab4.5_0010703g0040 Nicotiana tabacum HOM05D003611 ORTHO05D004281 4.4e-155 553.1 1083 40.4
Psat3g107120 Pisum sativum HOM05D003611 ORTHO05D004281 2.9e-154 550.4 1065 39.3
TWI23G0144 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 3.7e-154 550.1 1070 38.7
Lalb_Chr17g0339111 Lupinus albus HOM05D003611 ORTHO05D004281 1.6e-152 544.7 1057 38.7
DCAR_008631 Daucus carota HOM05D003611 ORTHO05D004281 2.7e-152 543.9 1016 39.0
Lalb_Chr10g0096711 Lupinus albus HOM05D003611 ORTHO05D004281 1.7e-151 541.2 1046 38.5
Sopen01g038800 Solanum pennellii HOM05D003611 ORTHO05D004281 3.9e-151 540.0 1091 38.9
TPR.G22300 Trifolium pratense HOM05D003611 ORTHO05D004281 6.6e-151 539.3 1097 38.2
Aqoxy7G00231 Aquilegia oxysepala HOM05D003611 ORTHO05D004281 1.9e-150 537.7 1060 39.9
Lalb_Chr04g0259241 Lupinus albus HOM05D003611 ORTHO05D004281 2.5e-150 537.3 1053 37.8
MELO3C006087.2 Cucumis melo HOM05D003611 ORTHO05D004281 3.3e-150 537.0 1097 38.5
Duzib138G0252 Durio zibethinus HOM05D003611 ORTHO05D004281 1.2e-149 535.0 1018 40.6
PSO478G2290 Papaver somniferum HOM05D003611 ORTHO05D004281 1.6e-149 534.6 1093 39.3
Solyc01g095020.3 Solanum lycopersicum HOM05D003611 ORTHO05D004281 2.8e-149 533.9 1098 38.8
HanXRQChr17g0562341 Helianthus annuus HOM05D003611 ORTHO05D004281 6.2e-149 532.7 1053 38.5
MSTRG.20858 Avicennia marina HOM05D003611 ORTHO05D004281 4.0e-148 530.0 1099 38.1
Ah.05g180220 Amaranthus hybridus HOM05D003611 ORTHO05D004281 1.5e-147 528.1 479 63.9
Actinidia20152 Actinidia chinensis HOM05D003611 ORTHO05D004281 5.8e-147 526.2 1101 37.0
CsaV3_3G008680 Cucumis sativus L. HOM05D003611 ORTHO05D004281 1.7e-146 524.6 1104 38.2
DCAR_006945 Daucus carota HOM05D003611 ORTHO05D004281 8.3e-146 522.3 1099 37.7
ClCG05G001310 Citrullus lanatus HOM05D003611 ORTHO05D004281 3.2e-145 520.4 1109 37.6
Migut.B01791 Erythranthe guttata HOM05D003611 ORTHO05D004281 4.1e-145 520.0 1100 38.2
PSO782G0890 Papaver somniferum HOM05D003611 ORTHO05D004281 4.1e-145 520.0 1091 38.8
Peaxi162Scf00585g00319 Petunia axillaris HOM05D003611 ORTHO05D004281 3.5e-144 516.9 1072 37.7
ECA234G2210 Erigeron canadensis HOM05D003611 ORTHO05D004281 3.3e-142 510.4 1057 38.8
Solyc10g012030.4 Solanum lycopersicum HOM05D003611 ORTHO05D004281 7.5e-139 499.2 1035 38.6
MBI11_g13553_MAGBIO Magnolia biondii HOM05D003611 ORTHO05D004281 3.9e-135 486.9 1142 37.1
MSTRG.4840 Avicennia marina HOM05D003611 ORTHO05D004281 8.6e-135 485.7 1085 36.8
Sopen10g005780 Solanum pennellii HOM05D003611 ORTHO05D004281 1.1e-134 485.3 1076 37.1
Sed0010511 Sechium edule HOM05D003611 ORTHO05D004281 9.5e-134 482.3 1110 35.9
Nitab4.5_0000690g0050 Nicotiana tabacum HOM05D003611 ORTHO05D004281 3.6e-133 480.3 1039 38.2
Actinidia10062 Actinidia chinensis HOM05D003611 ORTHO05D004281 2.3e-132 477.6 933 39.5
Nitab4.5_0000200g0170 Nicotiana tabacum HOM05D003611 ORTHO05D004281 9.9e-131 472.2 1038 38.0
Sed0009698 Sechium edule HOM05D003611 ORTHO05D004281 1.9e-129 468.0 1068 35.3
Oeu018963.2 Olea europaea HOM05D003611 ORTHO05D004281 2.7e-128 464.2 1158 34.5
Lsat_1_v5_gn_4_35681 Lactuca sativa HOM05D003611 ORTHO05D004281 9.9e-123 445.7 1099 37.4
AL6G52100 Arabidopsis lyrata HOM05D003611 ORTHO05D004281 5.4e-121 439.9 1082 35.5
Nitab4.5_0000915g0210 Nicotiana tabacum HOM05D003611 ORTHO05D004281 1.6e-120 438.3 1043 35.4
THA.LOC104825859 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 3.0e-119 434.1 1079 35.7
Carub.0006s3636 Capsella rubella HOM05D003611 ORTHO05D004281 9.6e-118 429.1 1070 34.6
AT4G01290 Arabidopsis thaliana HOM05D003611 ORTHO05D004281 2.1e-117 427.9 1092 34.7
Thhalv10028394m.g Eutrema salsugineum HOM05D003611 ORTHO05D004281 1.1e-113 415.6 1060 36.4
Sp6g00840 Schrenkiella parvula HOM05D003611 ORTHO05D004281 1.9e-113 414.8 1055 34.9
Lalb_Chr17g0339131 Lupinus albus HOM05D003611 ORTHO05D004281 7.1e-113 412.9 1039 34.3
Hma1.2p1_0627F.1_g191700 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 1.2e-112 412.1 849 37.5
THA.LOC104801395 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 4.6e-112 410.2 1078 35.2
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 4.8e-109 400.2 1048 34.2
CARHR249020 Cardamine hirsuta HOM05D003611 ORTHO05D004281 4.5e-107 393.7 1056 33.5
Oeu015220.3 Olea europaea HOM05D003611 ORTHO05D004281 3.9e-103 380.6 890 35.8
THA.LOC104817035 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 1.1e-102 379.0 1076 34.6
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 2.5e-102 377.9 1063 34.1
Aa31LG5G730 Aethionema arabicum HOM05D003611 ORTHO05D004281 5.8e-99 366.7 1138 32.0
BcaB01g02283 Brassica carinata HOM05D003611 ORTHO05D004281 9.3e-97 359.4 1070 33.3
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 1.8e-95 355.1 1060 33.2
Zm00001eb374330 Zea mays HOM05D003611 ORTHO05D004281 3.9e-95 354.0 1040 33.8
BcaC01g06854 Brassica carinata HOM05D003611 ORTHO05D004281 2.8e-93 347.8 1075 32.6
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 2.8e-93 347.8 1065 33.5
BolC3t16170H Brassica oleracea HOM05D003611 ORTHO05D004281 2.8e-93 347.8 1092 33.2
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 2.8e-93 347.8 1065 33.5
BcaC04g24140 Brassica carinata HOM05D003611 ORTHO05D004281 3.7e-93 347.4 1065 33.5
A03p31960 Brassica napus HOM05D003611 ORTHO05D004281 2.4e-92 344.7 1073 32.5
BraA03t12368Z Brassica rapa HOM05D003611 ORTHO05D004281 6.9e-92 343.2 1073 32.4
C03p38980 Brassica napus HOM05D003611 ORTHO05D004281 3.4e-91 340.9 1075 32.4
CDE11G0274 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 2.5e-89 334.7 1073 31.3
CDE09G0589 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 7.9e-88 329.7 1062 31.5
SalBow3G4181 Salvia bowleyana HOM05D003611 ORTHO05D004281 6.3e-85 320.1 532 43.4
BcaB01g02151 Brassica carinata HOM05D003611 ORTHO05D004281 8.2e-85 319.7 1074 32.3
Lalb_Chr04g0259231 Lupinus albus HOM05D003611 ORTHO05D004281 2.4e-84 318.2 637 37.0
BcaB05g23959 Brassica carinata HOM05D003611 ORTHO05D004281 5.1e-79 300.4 770 34.8
SGA_v2.0_scaffold4G02289 Striga asiatica HOM05D003611 ORTHO05D004281 4.1e-76 290.8 540 42.2
Os06g0105900 Oryza sativa ssp. japonica HOM05D003611 ORTHO05D004281 6.1e-72 276.9 1088 29.8
SalBow3G3040 Salvia bowleyana HOM05D003611 ORTHO05D004281 2.0e-70 271.9 536 37.1
unitig_8.g3336 Utricularia gibba HOM05D003611 ORTHO05D004281 8.5e-66 256.5 1024 30.5
ATR0661G469 Amborella trichopoda HOM05D003611 ORTHO05D004281 2.6e-62 245.0 1028 31.5
HPP92_002731 Vanilla planifolia HOM05D003611 ORTHO05D004281 3.6e-56 224.6 536 37.1
Actinidia02822 Actinidia chinensis HOM05D003611 ORTHO05D004281 1.1e-52 213.0 266 46.2
Lalb_Chr04g0259211 Lupinus albus HOM05D003611 ORTHO05D004281 6.1e-48 197.2 235 51.1
TAR374G0905 Trochodendron aralioides HOM05D003611 ORTHO05D004281 3.7e-37 161.4 207 46.9
Hma1.2p1_0623F.1_g191000 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 1.8e-36 159.1 196 51.0
GSVIVG01028853001 Vitis vinifera HOM05D003611 ORTHO05D004281 1.6e-32 146.0 331 33.8
Dinv35257 Davidia involucrata HOM05D003611 ORTHO05D004281 4.7e-32 144.4 1039 25.5
Cfa016292 Carpinus fangiana HOM05D003611 ORTHO05D004281 6.2e-32 144.1 331 37.2
Duzib268G1133 Durio zibethinus HOM05D003611 ORTHO05D004281 3.7e-29 134.8 144 50.0
TAR374G1053 Trochodendron aralioides HOM05D003611 ORTHO05D004281 2.4e-28 132.1 617 28.7
Haze_00050 Corylus avellana HOM05D003611 ORTHO05D004281 3.5e-27 128.3 967 26.6
unitig_22.g6727 Utricularia gibba HOM05D003611 ORTHO05D004281 1.5e-25 122.9 848 27.0
unitig_22.g6726 Utricularia gibba HOM05D003611 ORTHO05D004281 1.9e-25 122.5 196 45.4
QL09p012690 Quercus lobata HOM05D003611 ORTHO05D004281 2.5e-25 122.1 529 27.8
Duzib205G1157 Durio zibethinus HOM05D003611 ORTHO05D011897 1.6e-24 119.4 979 24.2
Pp3c19_15630 Physcomitrium patens HOM05D025697 ORTHO05D004281 9.9e-22 110.2 814 25.8
Gohir.A11G012500 Gossypium hirsutum HOM05D003611 ORTHO05D011897 6.4e-21 107.5 246 37.4
Hma1.2p1_0623F.1_g191005 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 1.1e-20 106.7 129 48.1
Thecc.03G184800 Theobroma cacao HOM05D003611 ORTHO05D011897 1.9e-20 105.9 246 37.8
TWI23G0357 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 1.9e-20 105.9 316 32.3
Pp3c18_8750 Physcomitrium patens HOM05D025697 ORTHO05D004281 3.5e-19 101.7 985 25.2
HPP92_002605 Vanilla planifolia HOM05D046274 ORTHO05D004281 1.5e-17 96.3 400 30.0
Gorai.007G013100 Gossypium raimondii HOM05D003611 ORTHO05D011897 3.3e-17 95.1 273 34.1
Atru.chr1.351 Acer truncatum HOM05D003611 ORTHO05D004281 7.3e-17 94.0 284 33.1
Dinv32513 Davidia involucrata HOM05D003611 ORTHO05D004281 9.5e-17 93.6 81 56.8
SEGI_14695 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 9.5e-17 93.6 333 31.8
Actinidia02823 Actinidia chinensis HOM05D003611 ORTHO05D004281 1.2e-16 93.2 318 32.1
Gohir.D11G011700 Gossypium hirsutum HOM05D003611 ORTHO05D011897 4.7e-16 91.3 308 32.8
Mapoly0012s0024 Marchantia polymorpha HOM05D003611 ORTHO05D021332 1.4e-12 79.7 906 25.3
Hund11716 Selenicereus undatus HOM05D003611 ORTHO05D026482 9.2e-12 77.0 336 28.6
ATR0661G048 Amborella trichopoda HOM05D003611 ORTHO05D004281 2.1e-11 75.9 230 32.6
Rhsim03G0191400 Rhododendron simsii HOM05D003611 ORTHO05D038142 5.1e-10 71.2 240 32.1
Prupe.2G301400 Prunus persica HOM05D010729 ORTHO05D011897 8.7e-10 70.5 252 30.2
SEGI_21460 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 5.6e-09 67.8 363 27.3
Hma1.2p1_2961F.1_g330880 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 1.2e-08 66.6 122 39.3
Oeu054339.1 Olea europaea HOM05D003611 ORTHO05D004281 1.6e-08 66.2 150 38.7
RcHm_v2.0_Chr1g0378421 Rosa chinensis HOM05D010729 ORTHO05D011897 1.1e-07 63.5 271 29.9
Ciclev10006595m.g Citrus clementina HOM05D003611 ORTHO05D004281 2.4e-07 62.4 307 28.0
AUR62031425 Chenopodium quinoa HOM05D034504 ORTHO05D026482 2.0e-06 59.3 217 30.0


User provided reference genes

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