Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 3.8e-159 564.7 270 100.0
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 2.0e-144 515.8 269 90.7
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 1.0e-143 513.5 270 90.0
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 1.6e-117 426.4 247 80.6
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 4.9e-114 414.8 270 68.5
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 6.4e-114 414.5 270 69.6
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 6.0e-112 407.9 270 68.1
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 7.8e-112 407.5 270 68.1
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 1.1e-110 403.7 270 68.1
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 1.1e-110 403.7 270 69.3
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 5.6e-110 401.4 270 67.4
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 7.3e-110 401.0 270 68.5
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 7.3e-110 401.0 270 67.4
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 9.6e-110 400.6 270 67.8
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 1.3e-109 400.2 270 67.4
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.3e-109 400.2 270 66.7
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.6e-109 399.8 271 66.1
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.6e-109 399.8 271 66.1
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.1e-109 399.4 271 66.1
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 4.8e-109 398.3 271 66.1
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 4.8e-109 398.3 270 66.3
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 6.2e-109 397.9 269 69.1
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 6.2e-109 397.9 271 65.7
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 1.8e-108 396.4 271 65.7
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 1.2e-107 393.7 271 65.7
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 1.5e-107 393.3 271 66.4
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 2.0e-107 392.9 271 66.1
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 2.6e-107 392.5 270 65.6
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 4.5e-107 391.7 268 66.0
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 4.5e-107 391.7 268 66.0
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 5.8e-107 391.3 270 65.9
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 1.3e-106 390.2 270 64.8
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 1.3e-106 390.2 270 66.3
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 6.4e-106 387.9 270 64.8
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 8.4e-106 387.5 269 65.8
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 1.1e-105 387.1 269 66.5
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 1.4e-105 386.7 268 66.0
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 9.3e-105 384.0 260 65.8
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 2.1e-104 382.9 270 64.4
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 3.5e-104 382.1 270 63.7
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 3.5e-104 382.1 269 64.3
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 4.6e-104 381.7 269 64.7
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 2.3e-103 379.4 271 64.2
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 2.3e-103 379.4 270 65.6
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 3.0e-103 379.0 270 63.0
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 7.4e-102 374.4 270 63.3
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 9.6e-102 374.0 275 63.6
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 1.3e-101 373.6 270 62.6
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 3.7e-101 372.1 270 63.7
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 4.8e-101 371.7 270 62.6
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 1.4e-100 370.2 270 62.2
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 1.8e-100 369.8 269 65.1
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 4.0e-100 368.6 270 61.9
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 1.2e-99 367.1 270 61.5
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 2.6e-99 365.9 264 65.5
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 3.4e-99 365.5 270 63.3
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 5.8e-99 364.8 273 63.7
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 1.7e-98 363.2 270 63.3
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 3.8e-98 362.1 270 63.0
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 3.8e-98 362.1 243 67.9
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 4.9e-98 361.7 270 63.0
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 1.4e-97 360.1 270 63.3
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 5.5e-97 358.2 270 61.5
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 7.1e-97 357.8 270 61.9
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 7.1e-97 357.8 289 59.5
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 1.6e-96 356.7 243 66.3
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 4.6e-96 355.1 270 60.7
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 6.0e-96 354.8 270 61.5
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 7.9e-96 354.4 270 61.5
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 7.9e-96 354.4 270 62.6
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 1.0e-95 354.0 269 59.5
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 3.9e-95 352.1 270 60.0
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 3.3e-94 349.0 271 61.6
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 9.6e-94 347.4 274 59.9
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 1.3e-93 347.1 274 59.9
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 1.6e-93 346.7 270 56.7
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 2.8e-93 345.9 270 56.3
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 9.0e-92 340.9 271 61.3
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 9.0e-92 340.9 241 66.0
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 2.0e-91 339.7 285 56.5
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 6.5e-90 334.7 270 58.5
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 1.2e-88 330.5 269 58.4
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 4.6e-88 328.6 270 56.7
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 8.2e-85 317.8 243 60.5
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 2.0e-83 313.2 239 61.1
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 4.5e-83 312.0 213 66.2
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 2.2e-82 309.7 265 55.8
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 5.7e-78 295.0 288 52.4
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 9.1e-76 287.7 217 59.4
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 7.7e-75 284.6 242 55.8
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 2.5e-73 279.6 243 55.1
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 2.5e-73 279.6 270 51.5
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 7.2e-73 278.1 206 62.6
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 3.6e-72 275.8 191 68.1
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 6.7e-71 271.6 270 49.6
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 1.1e-70 270.8 191 64.9
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 2.0e-70 270.0 190 64.2
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 5.7e-70 268.5 306 47.4
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 6.3e-69 265.0 255 52.9
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 7.0e-68 261.5 179 65.4
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 8.5e-66 254.6 252 51.6
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 8.5e-66 254.6 272 46.3
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 3.2e-65 252.7 245 53.5
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 5.3e-60 235.3 307 40.7
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 2.6e-59 233.0 270 43.3
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 1.3e-58 230.7 279 42.7
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 3.8e-58 229.2 245 45.3
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 3.2e-57 226.1 276 42.8
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 3.4e-54 216.1 191 56.5
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 5.7e-54 215.3 278 41.7
arahy.Tifrunner.gnm1.ann1.0G81PD Arachis hypogaea HOM05D000590 ORTHO05D006825 1.7e-53 213.8 208 54.3
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 7.0e-52 208.4 191 51.8
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 1.6e-48 197.2 316 33.9
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 3.6e-48 196.1 150 64.7
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 4.7e-48 195.7 157 59.2
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 5.2e-47 192.2 308 33.4
CDE02G2715 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 8.8e-47 191.4 193 49.2
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 2.6e-46 189.9 134 67.9
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 1.8e-44 183.7 276 37.0
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 9.1e-44 181.4 268 37.7
Sc26g0000670 Simmondsia chinensis HOM05D000590 ORTHO05D006825 1.2e-43 181.0 119 71.4
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 4.5e-43 179.1 127 66.1
CSS0016052 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 5.9e-43 178.7 117 67.5
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 5.6e-41 172.2 218 42.7
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 1.3e-37 161.0 128 55.5
CDE02G3030 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 4.1e-36 156.0 119 59.7
PSO063G6641 Papaver somniferum HOM05D000590 ORTHO05D006825 1.6e-35 154.1 123 58.5
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 5.9e-35 152.1 252 32.9
AT3G62500 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 1.5e-33 147.5 188 44.7
SEGI_01413 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 3.1e-31 139.8 119 51.3
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 4.9e-29 132.5 100 62.0
arahy.Tifrunner.gnm1.ann1.06LZL4 Arachis hypogaea HOM05D000590 ORTHO05D006825 1.9e-20 104.0 63 73.0
BolC4t24651H Brassica oleracea HOM05D000590 ORTHO05D006825 1.2e-19 101.3 106 48.1
CARHR055570 Cardamine hirsuta HOM05D000590 ORTHO05D006825 1.3e-18 97.8 78 59.0
SHI13292 Sapria himalayana HOM05D000590 ORTHO05D006825 6.6e-18 95.5 81 56.8
VMungo0331G1881 Vigna mungo HOM05D000590 ORTHO05D006825 2.5e-17 93.6 79 51.9
Lalb_Chr10g0100501 Lupinus albus HOM05D000590 ORTHO05D006825 4.3e-17 92.8 67 58.2
GSVIVG01027101001 Vitis vinifera HOM05D000590 ORTHO05D006825 2.8e-16 90.1 62 61.3
GSVIVG01027108001 Vitis vinifera HOM05D000590 ORTHO05D006825 4.7e-16 89.4 64 64.1
unitig_747.g21341 Utricularia gibba HOM05D000590 ORTHO05D006825 4.0e-15 86.3 57 64.9
SHI13291 Sapria himalayana HOM05D000590 ORTHO05D006825 2.6e-14 83.6 65 56.9
Zm00001eb197190 Zea mays HOM05D002169 ORTHO05D023180 2.1e-11 73.9 112 36.6
BcaC02g10248 Brassica carinata HOM05D000590 ORTHO05D006825 2.3e-10 70.5 46 58.7
Sabra02G0141900 Salix brachista HOM05D000590 ORTHO05D006825 1.9e-09 67.4 74 47.3
MD07G1149100 Malus domestica HOM05D000590 ORTHO05D006825 1.4e-07 61.2 44 63.6
Zm00001eb119810 Zea mays HOM05D000590 ORTHO05D006825 2.4e-07 60.5 67 37.3
PSO210G5020 Papaver somniferum HOM05D001459 ORTHO05D003498 2.0e-06 57.4 52 53.8


User provided reference genes

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