Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 4.5e-124 448.0 231 100.0
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 4.4e-95 351.7 230 79.6
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 1.1e-82 310.5 230 69.6
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 1.4e-80 303.5 229 69.4
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 3.0e-80 302.4 229 67.7
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 3.0e-80 302.4 229 67.7
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 4.0e-80 302.0 229 68.1
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 4.0e-80 302.0 231 66.7
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 5.2e-80 301.6 229 67.2
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 8.9e-80 300.8 229 67.7
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 1.2e-79 300.4 215 74.4
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 7.5e-79 297.7 229 67.2
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 1.7e-78 296.6 229 68.6
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 2.2e-78 296.2 229 67.7
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 2.8e-78 295.8 230 67.4
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 3.7e-78 295.4 228 67.1
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 6.3e-78 294.7 229 67.2
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 1.4e-77 293.5 229 66.4
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 5.4e-77 291.6 229 66.4
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 9.2e-77 290.8 229 66.8
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 1.2e-76 290.4 233 66.1
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 2.0e-76 289.7 219 66.7
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 4.5e-76 288.5 227 63.9
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.0e-75 287.3 229 65.1
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 1.3e-75 287.0 249 62.7
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.7e-75 286.6 232 65.9
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.3e-75 286.2 232 65.5
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 2.9e-75 285.8 249 61.8
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 2.9e-75 285.8 248 62.9
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 5.0e-75 285.0 232 65.9
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 5.0e-75 285.0 232 65.5
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 6.6e-75 284.6 217 66.8
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.5e-74 283.5 232 65.1
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 1.5e-74 283.5 226 65.9
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 1.9e-74 283.1 232 65.5
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.9e-74 283.1 249 61.0
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 3.3e-74 282.3 228 66.2
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 5.6e-74 281.6 249 61.0
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 5.6e-74 281.6 249 60.6
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 9.5e-74 280.8 251 60.2
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 9.5e-74 280.8 249 61.8
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 3.6e-73 278.9 226 65.5
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 1.0e-72 277.3 234 65.0
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 3.0e-72 275.8 219 64.8
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 5.2e-72 275.0 233 63.5
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 6.8e-72 274.6 231 61.9
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 8.9e-72 274.2 220 65.5
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 1.5e-71 273.5 227 62.6
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 2.0e-71 273.1 218 63.8
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 3.4e-71 272.3 229 63.8
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 3.4e-71 272.3 232 63.4
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 3.4e-71 272.3 218 63.8
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 4.4e-71 271.9 219 63.9
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 7.5e-71 271.2 232 62.1
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 7.5e-71 271.2 241 63.1
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 7.5e-71 271.2 226 62.4
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 9.8e-71 270.8 227 62.1
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 1.3e-70 270.4 233 61.4
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 1.7e-70 270.0 217 67.3
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 1.7e-70 270.0 226 63.7
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 8.3e-70 267.7 227 63.4
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 1.4e-69 266.9 215 65.1
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 4.1e-69 265.4 219 63.9
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 5.4e-69 265.0 236 58.1
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 7.0e-69 264.6 230 63.9
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 9.2e-69 264.2 239 61.1
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 1.6e-68 263.5 223 62.8
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 7.8e-68 261.2 215 61.9
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 1.7e-67 260.0 229 61.1
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 2.3e-67 259.6 219 62.1
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 3.0e-67 259.2 219 63.0
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 5.0e-67 258.5 217 61.8
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 5.0e-67 258.5 217 61.8
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 6.6e-67 258.1 237 60.3
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 6.6e-67 258.1 241 61.0
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 6.6e-67 258.1 224 60.7
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 8.6e-67 257.7 237 60.3
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 1.5e-66 256.9 199 66.8
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 4.3e-66 255.4 196 66.3
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 4.3e-66 255.4 219 62.1
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 4.3e-66 255.4 214 65.9
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 5.6e-66 255.0 245 58.0
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 9.5e-66 254.2 251 59.8
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 2.1e-65 253.1 245 59.6
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 2.8e-65 252.7 208 65.4
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 1.1e-64 250.8 260 56.9
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 1.4e-64 250.4 197 68.0
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 2.3e-64 249.6 262 55.7
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 7.5e-63 244.6 196 65.3
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 8.3e-62 241.1 177 72.3
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 1.9e-61 240.0 214 60.7
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 7.0e-61 238.0 208 64.4
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 2.7e-60 236.1 178 68.0
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 5.1e-59 231.9 227 58.1
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 1.5e-55 220.3 200 57.5
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 3.7e-54 215.7 153 69.3
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 8.3e-54 214.5 195 57.4
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 2.3e-51 206.5 237 51.5
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 1.7e-46 190.3 154 63.6
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 1.1e-45 187.6 191 53.9
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 1.5e-42 177.2 159 59.1
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 2.6e-39 166.4 154 58.4
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 1.1e-37 161.0 190 50.5
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 9.3e-37 157.9 221 45.7
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 1.7e-35 153.7 221 43.4
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 2.3e-35 153.3 182 46.7
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 4.8e-33 145.6 112 63.4
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 1.8e-32 143.7 155 47.7
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 4.6e-28 129.0 93 66.7
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 1.2e-23 114.4 158 45.6
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 2.6e-23 113.2 163 44.2
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 3.4e-23 112.8 125 52.0
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 6.4e-22 108.6 107 55.1
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 2.4e-16 90.1 126 38.1
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 2.2e-14 83.6 220 31.4
Gorai.011G078500 Gossypium raimondii HOM05D006960 ORTHO05D008699 1.0e-06 58.2 65 47.7
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 1.0e-06 58.2 36 72.2
Gohir.D08G121100 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.7e-06 57.4 65 47.7
Gohir.D10G162832 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.7e-06 57.4 65 47.7
Gorai.002G097600 Gossypium raimondii HOM05D006960 ORTHO05D018836 2.9e-06 56.6 65 47.7
Gohir.D05G312133 Gossypium hirsutum HOM05D006960 ORTHO05D008699 6.5e-06 55.5 65 46.2


User provided reference genes

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