Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00115 Beta vulgaris HOM05D007628 ORTHO05D007342 2.7e-48 194.9 90 100.0
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 9.2e-33 143.3 84 79.8
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 2.7e-32 141.7 84 79.8
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 1.3e-15 86.3 80 55.0
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 6.6e-15 84.0 77 51.9
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 2.5e-14 82.0 72 56.9
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 9.6e-14 80.1 80 52.5
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 1.6e-13 79.3 83 47.0
EL10Ac1g00116 Beta vulgaris HOM05D000090 ORTHO05D001584 3.6e-13 78.2 72 52.8
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 3.1e-12 75.1 80 47.5
unitig_578.g16589 Utricularia gibba HOM05D007628 ORTHO05D007342 9.0e-12 73.6 74 47.3
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 5.8e-11 70.9 80 47.5
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 7.6e-11 70.5 77 48.1
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 7.6e-11 70.5 83 47.0
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 7.6e-11 70.5 81 51.9
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 1.3e-10 69.7 89 44.9
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 2.9e-10 68.6 76 44.7
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 3.8e-10 68.2 81 48.1
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 4.9e-10 67.8 88 42.0
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 4.9e-10 67.8 71 50.7
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 4.9e-10 67.8 76 42.1
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 2.4e-09 65.5 89 39.3
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 2.4e-09 65.5 85 41.2
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 4.2e-09 64.7 84 44.0
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 5.4e-09 64.3 52 51.9
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 9.3e-09 63.5 76 46.1
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 9.3e-09 63.5 68 41.2
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 1.2e-08 63.2 68 41.2
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.2e-08 63.2 68 41.2
unitig_8.g5068 Utricularia gibba HOM05D007628 ORTHO05D007342 1.2e-08 63.2 71 42.3
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 1.6e-08 62.8 44 59.1
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 2.1e-08 62.4 65 43.1
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 2.7e-08 62.0 51 51.0
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 2.7e-08 62.0 87 43.7
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 2.7e-08 62.0 84 42.9
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 2.7e-08 62.0 84 42.9
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 3.5e-08 61.6 76 42.1
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 3.5e-08 61.6 81 44.4
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 3.5e-08 61.6 81 44.4
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 4.6e-08 61.2 80 43.8
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 6.0e-08 60.8 75 46.7
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 6.0e-08 60.8 81 39.5
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 6.0e-08 60.8 81 39.5
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 6.0e-08 60.8 65 41.5
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 1.0e-07 60.1 50 50.0
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 1.0e-07 60.1 80 40.0
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 1.3e-07 59.7 76 44.7
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 1.3e-07 59.7 71 45.1
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 1.3e-07 59.7 81 44.4
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 1.3e-07 59.7 68 42.6
unitig_578.g16588 Utricularia gibba HOM05D007628 ORTHO05D007342 2.3e-07 58.9 46 54.3
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 3.0e-07 58.5 78 46.2
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 3.0e-07 58.5 46 47.8
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.9e-07 58.2 50 46.0
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 5.1e-07 57.8 85 38.8
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 5.1e-07 57.8 66 43.9
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 8.7e-07 57.0 81 43.2
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 8.7e-07 57.0 65 43.1
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 8.7e-07 57.0 73 41.1
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 8.7e-07 57.0 65 41.5
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 8.7e-07 57.0 83 39.8
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 1.5e-06 56.2 78 33.3
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 1.5e-06 56.2 53 50.9
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 1.9e-06 55.8 79 41.8
Rhsim11G0055100 Rhododendron simsii HOM05D007628 ORTHO05D007342 1.9e-06 55.8 67 38.8
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 1.9e-06 55.8 46 47.8
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.5e-06 55.5 83 44.6
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 4.3e-06 54.7 50 48.0
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 4.3e-06 54.7 50 48.0
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 4.3e-06 54.7 50 48.0
Solyc07g054720.2 Solanum lycopersicum HOM05D008200 ORTHO05D007342 4.3e-06 54.7 78 39.7
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 5.6e-06 54.3 78 37.2
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 5.6e-06 54.3 47 48.9
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 7.3e-06 53.9 52 44.2
Sopen07g028650 Solanum pennellii HOM05D008200 ORTHO05D010849 9.6e-06 53.5 71 46.5


User provided reference genes

Program Settings