Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00113 Beta vulgaris HOM05D001979 ORTHO05D001961 9.6e-41 169.9 94 100.0
Manes.02G196400 Manihot esculenta HOM05D001979 ORTHO05D001961 9.4e-12 73.6 72 59.7
TWI23G0663 Tripterygium wilfordii HOM05D001979 ORTHO05D001961 3.9e-10 68.2 68 58.8
CsaV3_2G025980 Cucumis sativus L. HOM05D001979 ORTHO05D001961 5.1e-10 67.8 66 57.6
Migut.C01296 Erythranthe guttata HOM05D001979 ORTHO05D001961 5.1e-10 67.8 68 54.4
CANSAT25G3719 Cannabis sativa HOM05D001979 ORTHO05D001961 6.7e-10 67.4 70 55.7
Actinidia23021 Actinidia chinensis HOM05D001979 ORTHO05D001961 8.8e-10 67.0 72 50.0
ClCG08G016630 Citrullus lanatus HOM05D001979 ORTHO05D001961 8.8e-10 67.0 66 56.1
MELO3C010790.2 Cucumis melo HOM05D001979 ORTHO05D001961 8.8e-10 67.0 66 56.1
CAN.G675.6 Capsicum annuum HOM05D001979 ORTHO05D001961 1.5e-09 66.2 72 54.2
Rhsim06G0114300 Rhododendron simsii HOM05D001979 ORTHO05D001961 2.0e-09 65.9 72 52.8
Solyc02g078190.3 Solanum lycopersicum HOM05D001979 ORTHO05D001961 2.0e-09 65.9 72 54.2
Sopen02g023050 Solanum pennellii HOM05D001979 ORTHO05D001961 2.0e-09 65.9 72 54.2
PGSC0003DMG400029692 Solanum tuberosum HOM05D001979 ORTHO05D001961 2.0e-09 65.9 72 54.2
Nitab4.5_0008273g0010 Nicotiana tabacum HOM05D001979 ORTHO05D001961 4.3e-09 64.7 72 54.2
Oeu064072.1 Olea europaea HOM05D001979 ORTHO05D001961 4.3e-09 64.7 68 55.9
GSVIVG01005727001 Vitis vinifera HOM05D001979 ORTHO05D001961 4.3e-09 64.7 72 54.2
PGR102G2617 Punica granatum HOM05D001979 ORTHO05D001961 7.4e-09 63.9 70 52.9
GSVIVG01001799001 Vitis vinifera HOM05D001979 ORTHO05D001961 7.4e-09 63.9 72 52.8
GSVIVG01001791001 Vitis vinifera HOM05D001979 ORTHO05D001961 9.7e-09 63.5 72 52.8
GSVIVG01012803001 Vitis vinifera HOM05D001979 ORTHO05D001961 9.7e-09 63.5 72 52.8
AT4G25950 Arabidopsis thaliana HOM05D001979 ORTHO05D001961 1.3e-08 63.2 65 55.4
Cfa012933 Carpinus fangiana HOM05D001979 ORTHO05D001961 1.3e-08 63.2 72 55.6
BcaC06g32780 Brassica carinata HOM05D001979 ORTHO05D001961 1.7e-08 62.8 65 56.9
A01p17210 Brassica napus HOM05D001979 ORTHO05D001961 1.7e-08 62.8 65 56.9
A03p56330 Brassica napus HOM05D001979 ORTHO05D001961 1.7e-08 62.8 65 56.9
BraA01t01677Z Brassica rapa HOM05D001979 ORTHO05D001961 1.7e-08 62.8 65 56.9
Ciclev10002904m.g Citrus clementina HOM05D001979 ORTHO05D001961 1.7e-08 62.8 68 52.9
MD15G1410200 Malus domestica HOM05D001979 ORTHO05D001961 1.7e-08 62.8 71 52.1
C07p54570 Brassica napus HOM05D001979 ORTHO05D001961 2.2e-08 62.4 65 55.4
Lj1g0006715 Lotus japonicus HOM05D001979 ORTHO05D001961 2.2e-08 62.4 68 52.9
THA.LOC104811776 Tarenaya hassleriana HOM05D001979 ORTHO05D001961 2.2e-08 62.4 65 55.4
TPR.G12212 Trifolium pratense HOM05D001979 ORTHO05D001961 2.2e-08 62.4 68 52.9
C06p07650 Brassica napus HOM05D001979 ORTHO05D001961 2.8e-08 62.0 65 56.9
VMungo0720G0478 Vigna mungo HOM05D001979 ORTHO05D001961 2.8e-08 62.0 71 50.7
BcaNung03771 Brassica carinata HOM05D001979 ORTHO05D001961 3.7e-08 61.6 65 55.4
BraA03t14703Z Brassica rapa HOM05D001979 ORTHO05D001961 3.7e-08 61.6 65 56.9
CSS0038940 Camellia sinensis var. sinensis HOM05D001979 ORTHO05D001961 3.7e-08 61.6 72 50.0
Psat3g195800 Pisum sativum HOM05D001979 ORTHO05D001961 3.7e-08 61.6 71 50.7
QL02p047494 Quercus lobata HOM05D001979 ORTHO05D001961 3.7e-08 61.6 72 52.8
unitig_32.g11183 Utricularia gibba HOM05D001979 ORTHO05D001961 3.7e-08 61.6 70 51.4
Aa31LG3G320 Aethionema arabicum HOM05D001979 ORTHO05D001961 4.8e-08 61.2 65 53.8
BolC7t45945H Brassica oleracea HOM05D001979 ORTHO05D001961 4.8e-08 61.2 65 55.4
DCAR_028564 Daucus carota HOM05D001979 ORTHO05D001961 4.8e-08 61.2 81 48.1
Glyma.18G253300 Glycine max HOM05D001979 ORTHO05D001961 4.8e-08 61.2 68 52.9
Lalb_Chr19g0126571 Lupinus albus HOM05D001979 ORTHO05D001961 4.8e-08 61.2 68 48.5
Peaxi162Scf00011g00744 Petunia axillaris HOM05D001979 ORTHO05D001961 4.8e-08 61.2 68 52.9
Phvul.007G220600 Phaseolus vulgaris HOM05D001979 ORTHO05D001961 4.8e-08 61.2 71 50.7
SGA_v2.0_scaffold24G10575 Striga asiatica HOM05D001979 ORTHO05D001961 4.8e-08 61.2 68 50.0
GSVIVG01001792001 Vitis vinifera HOM05D001979 ORTHO05D001961 4.8e-08 61.2 72 51.4
Actinidia03060 Actinidia chinensis HOM05D001979 ORTHO05D001961 6.3e-08 60.8 67 52.2
CSS0007966 Camellia sinensis var. sinensis HOM05D001979 ORTHO05D001961 6.3e-08 60.8 72 48.6
CSS0017446 Camellia sinensis var. sinensis HOM05D001979 ORTHO05D001961 6.3e-08 60.8 72 48.6
Thhalv10026625m.g Eutrema salsugineum HOM05D001979 ORTHO05D001961 6.3e-08 60.8 65 52.3
arahy.Tifrunner.gnm1.ann1.H7D190 Arachis hypogaea HOM05D001979 ORTHO05D001961 8.2e-08 60.5 65 53.8
arahy.Tifrunner.gnm1.ann1.SKYN7R Arachis hypogaea HOM05D001979 ORTHO05D001961 8.2e-08 60.5 65 53.8
MSTRG.25463 Avicennia marina HOM05D001979 ORTHO05D001961 8.2e-08 60.5 67 55.2
BcaC09g50730 Brassica carinata HOM05D001979 ORTHO05D001961 8.2e-08 60.5 65 55.4
C01p21540 Brassica napus HOM05D001979 ORTHO05D001961 8.2e-08 60.5 65 55.4
BolC1t02074H Brassica oleracea HOM05D001979 ORTHO05D001961 8.2e-08 60.5 65 55.4
Carub.0007s1500 Capsella rubella HOM05D001979 ORTHO05D001961 8.2e-08 60.5 65 52.3
Glyma.10G052700 Glycine max HOM05D001979 ORTHO05D001961 8.2e-08 60.5 71 52.1
Lalb_Chr19g0125571 Lupinus albus HOM05D001979 ORTHO05D001961 8.2e-08 60.5 68 48.5
Sp7g23960 Schrenkiella parvula HOM05D001979 ORTHO05D001961 8.2e-08 60.5 65 53.8
Atru.chr13.2378 Acer truncatum HOM05D001979 ORTHO05D001961 1.1e-07 60.1 68 51.5
AL7G27050 Arabidopsis lyrata HOM05D001979 ORTHO05D001961 1.1e-07 60.1 65 50.8
MD08G1220000 Malus domestica HOM05D001979 ORTHO05D001961 1.1e-07 60.1 71 50.7
TAR376G1240 Trochodendron aralioides HOM05D001979 ORTHO05D001961 1.1e-07 60.1 71 50.7
CSS0015497 Camellia sinensis var. sinensis HOM05D001979 ORTHO05D001961 1.4e-07 59.7 72 48.6
MBI15_g19326_MAGBIO Magnolia biondii HOM05D001979 ORTHO05D001961 1.4e-07 59.7 69 50.7
RcHm_v2.0_Chr7g0228351 Rosa chinensis HOM05D001979 ORTHO05D001961 1.4e-07 59.7 71 49.3
Glyma.13G139900 Glycine max HOM05D001979 ORTHO05D001961 1.8e-07 59.3 71 50.7
Potri.019G080700 Populus trichocarpa HOM05D001979 ORTHO05D001961 1.8e-07 59.3 68 51.5
Thecc.08G187800 Theobroma cacao HOM05D001979 ORTHO05D001961 1.8e-07 59.3 68 51.5
Lalb_Chr21g0314801 Lupinus albus HOM05D001979 ORTHO05D001961 2.4e-07 58.9 71 50.7
Prupe.1G552300 Prunus persica HOM05D001979 ORTHO05D001961 2.4e-07 58.9 71 50.7
QL07p044586 Quercus lobata HOM05D001979 ORTHO05D001961 2.4e-07 58.9 71 49.3
arahy.Tifrunner.gnm1.ann1.64HYJD Arachis hypogaea HOM05D001979 ORTHO05D001961 3.1e-07 58.5 75 48.0
BcaC08g43397 Brassica carinata HOM05D001979 ORTHO05D001961 3.1e-07 58.5 61 57.4
Ca_12556_v3 Cicer arietinum L. HOM05D001979 ORTHO05D001961 3.1e-07 58.5 71 50.7
Duzib177G1136 Durio zibethinus HOM05D001979 ORTHO05D001961 3.1e-07 58.5 68 51.5
Eucgr.F04118 Eucalyptus grandis HOM05D001979 ORTHO05D001961 3.1e-07 58.5 72 51.4
HanXRQChr14g0454391 Helianthus annuus HOM05D001979 ORTHO05D001961 3.1e-07 58.5 67 49.3
Lj5g0013216 Lotus japonicus HOM05D001979 ORTHO05D001961 3.1e-07 58.5 71 49.3
CiPaw.07G236700 Carya illinoinensis HOM05D001979 ORTHO05D001961 4.1e-07 58.2 68 52.9
HanXRQChr07g0195541 Helianthus annuus HOM05D001979 ORTHO05D001961 4.1e-07 58.2 67 46.3
Psat6g066800 Pisum sativum HOM05D001979 ORTHO05D001961 4.1e-07 58.2 71 49.3
TWI14G1241 Tripterygium wilfordii HOM05D001979 ORTHO05D001961 4.1e-07 58.2 62 59.7
Haze_21288 Corylus avellana HOM05D001979 ORTHO05D001961 5.3e-07 57.8 72 51.4
Lj1g0010346 Lotus japonicus HOM05D001979 ORTHO05D001961 5.3e-07 57.8 71 49.3
VMungo1383G2333 Vigna mungo HOM05D001979 ORTHO05D001961 5.3e-07 57.8 72 50.0
Aqoxy5G03462 Aquilegia oxysepala HOM05D001979 ORTHO05D001961 6.9e-07 57.4 72 47.2
Glyma.03G180700 Glycine max HOM05D001979 ORTHO05D001961 6.9e-07 57.4 71 49.3
Gohir.A04G074600 Gossypium hirsutum HOM05D001979 ORTHO05D001961 6.9e-07 57.4 67 50.7
MBI07_g19313_MAGBIO Magnolia biondii HOM05D001979 ORTHO05D001961 6.9e-07 57.4 67 52.2
SalBow6G5780 Salvia bowleyana HOM05D001979 ORTHO05D001961 6.9e-07 57.4 71 47.9
TAR624G1287 Trochodendron aralioides HOM05D001264 ORTHO05D001961 6.9e-07 57.4 72 50.0
CDE07G1146 Ceratophyllum demersum HOM05D001979 ORTHO05D001961 9.1e-07 57.0 67 52.2
Duzib093G1114 Durio zibethinus HOM05D001979 ORTHO05D001961 9.1e-07 57.0 67 49.3
Duzib128G1663 Durio zibethinus HOM05D001979 ORTHO05D001961 9.1e-07 57.0 67 49.3
ECA238G0156 Erigeron canadensis HOM05D001979 ORTHO05D001961 9.1e-07 57.0 67 47.8
Migut.F00924 Erythranthe guttata HOM05D001979 ORTHO05D001961 9.1e-07 57.0 71 46.5
Gohir.D13G023000 Gossypium hirsutum HOM05D001979 ORTHO05D001961 9.1e-07 57.0 67 52.2
Lalb_Chr06g0171511 Lupinus albus HOM05D001979 ORTHO05D001961 9.1e-07 57.0 71 49.3
CARHR233460 Cardamine hirsuta HOM05D001979 ORTHO05D001961 1.2e-06 56.6 65 50.8
Cpa.g.sc666.2 Carica papaya HOM05D001979 ORTHO05D001961 1.2e-06 56.6 67 50.7
Cfa017544 Carpinus fangiana HOM05D001979 ORTHO05D001961 1.2e-06 56.6 67 50.7
Medtr7g007770 Medicago truncatula HOM05D001979 ORTHO05D001961 1.2e-06 56.6 68 47.1
Phvul.008G045800 Phaseolus vulgaris HOM05D001979 ORTHO05D001961 1.2e-06 56.6 68 47.1
arahy.Tifrunner.gnm1.ann1.CE6ZYU Arachis hypogaea HOM05D001979 ORTHO05D001961 1.5e-06 56.2 71 49.3
CSS0026294 Camellia sinensis var. sinensis HOM05D001979 ORTHO05D001961 1.5e-06 56.2 68 50.0
CSS0037773 Camellia sinensis var. sinensis HOM05D001979 ORTHO05D001961 1.5e-06 56.2 68 50.0
Glyma.09G242300 Glycine max HOM05D001979 ORTHO05D001961 1.5e-06 56.2 63 52.4
Gohir.D04G113400 Gossypium hirsutum HOM05D001979 ORTHO05D001961 1.5e-06 56.2 67 49.3
Gorai.009G418200 Gossypium raimondii HOM05D001979 ORTHO05D001961 1.5e-06 56.2 67 49.3
Hma1.2p1_0651F.1_g195650 Hydrangea macrophylla HOM05D001979 ORTHO05D001961 1.5e-06 56.2 68 51.5
Actinidia38277 Actinidia chinensis HOM05D001979 ORTHO05D001961 2.0e-06 55.8 67 47.8
arahy.Tifrunner.gnm1.ann1.DXQS2Y Arachis hypogaea HOM05D001979 ORTHO05D001961 2.0e-06 55.8 71 46.5
arahy.Tifrunner.gnm1.ann1.ZM0CN1 Arachis hypogaea HOM05D001979 ORTHO05D001961 2.0e-06 55.8 71 46.5
DCAR_006442 Daucus carota HOM05D001979 ORTHO05D001961 2.0e-06 55.8 67 50.7
Duzib128G1792 Durio zibethinus HOM05D001979 ORTHO05D001961 2.0e-06 55.8 67 50.7
Gohir.A13G024100 Gossypium hirsutum HOM05D001979 ORTHO05D001961 2.0e-06 55.8 67 50.7
HanXRQChr07g0195191 Helianthus annuus HOM05D001979 ORTHO05D001961 2.0e-06 55.8 67 44.8
Potri.013G108300 Populus trichocarpa HOM05D001979 ORTHO05D001961 2.0e-06 55.8 68 50.0
THA.LOC104802409 Tarenaya hassleriana HOM05D001979 ORTHO05D001961 2.0e-06 55.8 67 50.7
Cfa017549 Carpinus fangiana HOM05D001979 ORTHO05D001961 2.6e-06 55.5 67 49.3
Cc10_g10250 Coffea canephora HOM05D001979 ORTHO05D001961 2.6e-06 55.5 71 47.9
CsaV3_3G035760 Cucumis sativus L. HOM05D001979 ORTHO05D001961 2.6e-06 55.5 67 49.3
Dinv37281 Davidia involucrata HOM05D001979 ORTHO05D001961 2.6e-06 55.5 68 50.0
FAN08G0995 Fragaria x ananassa HOM05D001979 ORTHO05D001961 2.6e-06 55.5 71 45.1
Gorai.013G025700 Gossypium raimondii HOM05D001979 ORTHO05D001961 2.6e-06 55.5 67 50.7
TPR.G21202 Trifolium pratense HOM05D001979 ORTHO05D001961 2.6e-06 55.5 71 47.9
GSVIVG01025678001 Vitis vinifera HOM05D001979 ORTHO05D001961 2.6e-06 55.5 67 52.2
A05p44590 Brassica napus HOM05D001979 ORTHO05D001961 3.4e-06 55.1 71 45.1
BraA05t23197Z Brassica rapa HOM05D001979 ORTHO05D001961 3.4e-06 55.1 71 45.1
CANSAT80G0010 Cannabis sativa HOM05D001979 ORTHO05D001961 3.4e-06 55.1 67 49.3
FvH4_5g32250 Fragaria vesca HOM05D001979 ORTHO05D001961 3.4e-06 55.1 71 45.1
FAN18G0177 Fragaria x ananassa HOM05D001979 ORTHO05D001961 3.4e-06 55.1 71 45.1
HanXRQChr15g0496641 Helianthus annuus HOM05D001979 ORTHO05D001961 3.4e-06 55.1 71 45.1
Lsat_1_v5_gn_2_108901 Lactuca sativa HOM05D001979 ORTHO05D001961 3.4e-06 55.1 67 47.8
Eucgr.K03243 Eucalyptus grandis HOM05D001979 ORTHO05D001961 4.5e-06 54.7 67 49.3
PSO782G2339 Papaver somniferum HOM05D001979 ORTHO05D001961 4.5e-06 54.7 72 45.8
SGA_v2.0_scaffold62G21357 Striga asiatica HOM05D001979 ORTHO05D001961 4.5e-06 54.7 71 43.7
ATR0115G021 Amborella trichopoda HOM05D001979 ORTHO05D001961 5.9e-06 54.3 67 49.3
Lj1A914T40 Lonicera japonica HOM05D001979 ORTHO05D001961 5.9e-06 54.3 67 47.8
Medtr1g064540 Medicago truncatula HOM05D001979 ORTHO05D001961 5.9e-06 54.3 71 47.9
Oeu033846.1 Olea europaea HOM05D001979 ORTHO05D001961 5.9e-06 54.3 71 46.5
Oeu033847.1 Olea europaea HOM05D001979 ORTHO05D001961 5.9e-06 54.3 71 46.5
PSO063G6788 Papaver somniferum HOM05D001979 ORTHO05D001961 5.9e-06 54.3 72 44.4
C09p75180 Brassica napus HOM05D001979 ORTHO05D001961 7.7e-06 53.9 71 45.1
BolC5t35146H Brassica oleracea HOM05D001979 ORTHO05D001961 7.7e-06 53.9 71 45.1
ECA232G2415 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.7e-06 53.9 67 46.3
HanXRQChr09g0249671 Helianthus annuus HOM05D001979 ORTHO05D001961 7.7e-06 53.9 71 43.7
Zm00001eb095390 Zea mays HOM05D001979 ORTHO05D001961 7.7e-06 53.9 67 46.3


User provided reference genes

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