Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00069 Beta vulgaris HOM05D004393 ORTHO05D004897 7.6e-80 300.4 151 100.0
AUR62012506 Chenopodium quinoa HOM05D004393 ORTHO05D004897 4.6e-37 158.3 137 61.3
AUR62023578 Chenopodium quinoa HOM05D004393 ORTHO05D004897 1.1e-33 147.1 154 55.2
AUR62004661 Chenopodium quinoa HOM05D004393 ORTHO05D004897 3.4e-32 142.1 154 53.2
Hund27078 Selenicereus undatus HOM05D004393 ORTHO05D004897 4.6e-29 131.7 152 49.3
PGSC0003DMG402026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 2.3e-28 129.4 157 45.9
MSTRG.25436 Avicennia marina HOM05D004393 ORTHO05D004897 3.0e-28 129.0 155 47.1
CAN.G199.23 Capsicum annuum HOM05D004393 ORTHO05D004897 5.1e-28 128.3 157 45.2
Sc01g0001720 Simmondsia chinensis HOM05D004393 ORTHO05D004897 8.8e-28 127.5 149 49.0
CSS0013393 Camellia sinensis var. sinensis HOM05D004393 ORTHO05D004897 3.3e-27 125.6 162 45.7
Oeu039591.2 Olea europaea HOM05D004393 ORTHO05D004897 4.4e-27 125.2 156 46.2
Sopen06g023940 Solanum pennellii HOM05D004393 ORTHO05D004897 7.4e-27 124.4 157 45.9
Glyma.02G074500 Glycine max HOM05D004393 ORTHO05D004897 9.7e-27 124.0 146 46.6
Nn5g27793 Nelumbo nucifera HOM05D004393 ORTHO05D004897 1.3e-26 123.6 151 46.4
Ah.05g177790 Amaranthus hybridus HOM05D004393 ORTHO05D004897 1.7e-26 123.2 147 47.6
Nitab4.5_0004461g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 1.7e-26 123.2 153 44.4
Oeu021008.1 Olea europaea HOM05D004393 ORTHO05D004897 2.2e-26 122.9 155 45.2
GSVIVG01034506001 Vitis vinifera HOM05D004393 ORTHO05D004897 2.2e-26 122.9 158 44.3
Peaxi162Scf00268g01216 Petunia axillaris HOM05D004393 ORTHO05D004897 2.8e-26 122.5 157 43.3
QL02p034089 Quercus lobata HOM05D004393 ORTHO05D004897 2.8e-26 122.5 160 43.8
Solyc06g065450.3 Solanum lycopersicum HOM05D004393 ORTHO05D004897 3.7e-26 122.1 157 45.2
Ciclev10000264m.g Citrus clementina HOM05D004393 ORTHO05D004897 6.3e-26 121.3 150 44.0
Nitab4.5_0000303g0030 Nicotiana tabacum HOM05D004393 ORTHO05D004897 6.3e-26 121.3 157 44.6
Potri.013G114700 Populus trichocarpa HOM05D004393 ORTHO05D004897 1.1e-25 120.6 159 43.4
COL.COLO4_29964 Corchorus olitorius HOM05D004393 ORTHO05D004897 1.8e-25 119.8 160 43.8
Glyma.16G156500 Glycine max HOM05D004393 ORTHO05D004897 2.4e-25 119.4 146 44.5
Sabra13G0097000 Salix brachista HOM05D004393 ORTHO05D004897 2.4e-25 119.4 159 42.8
Manes.18G099700 Manihot esculenta HOM05D004393 ORTHO05D004897 5.3e-25 118.2 152 44.1
CAN.G61.21 Capsicum annuum HOM05D004393 ORTHO05D004897 6.9e-25 117.9 153 45.1
Prupe.8G054200 Prunus persica HOM05D004393 ORTHO05D004897 6.9e-25 117.9 158 41.8
Duzib116G0396 Durio zibethinus HOM05D004393 ORTHO05D004897 1.2e-24 117.1 159 41.5
Nitab4.5_0009001g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 1.2e-24 117.1 158 44.3
VMungo0464G1718 Vigna mungo HOM05D004393 ORTHO05D004897 1.2e-24 117.1 145 43.4
arahy.Tifrunner.gnm1.ann1.Y0NS3Z Arachis hypogaea HOM05D004393 ORTHO05D004897 1.5e-24 116.7 144 44.4
SalBow7G1128 Salvia bowleyana HOM05D004393 ORTHO05D004897 1.5e-24 116.7 156 43.6
Migut.C01240 Erythranthe guttata HOM05D004393 ORTHO05D004897 2.0e-24 116.3 150 44.0
CiPaw.16G062700 Carya illinoinensis HOM05D004393 ORTHO05D004897 2.6e-24 115.9 159 42.8
Cpa.g.sc66.57 Carica papaya HOM05D004393 ORTHO05D004897 3.4e-24 115.5 158 40.5
Sopen11g009080 Solanum pennellii HOM05D004393 ORTHO05D004897 3.4e-24 115.5 157 43.9
Cfa018204 Carpinus fangiana HOM05D004393 ORTHO05D004897 4.5e-24 115.2 151 42.4
Thecc.08G202200 Theobroma cacao HOM05D004393 ORTHO05D004897 4.5e-24 115.2 160 41.2
Peaxi162Scf00495g00119 Petunia axillaris HOM05D004393 ORTHO05D004897 5.9e-24 114.8 155 43.2
Phvul.004G084400 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 5.9e-24 114.8 145 42.1
TAR381G1591 Trochodendron aralioides HOM05D004393 ORTHO05D004897 5.9e-24 114.8 159 42.8
Solyc11g017130.2 Solanum lycopersicum HOM05D004393 ORTHO05D004897 7.7e-24 114.4 157 43.3
arahy.Tifrunner.gnm1.ann1.1646XJ Arachis hypogaea HOM05D004393 ORTHO05D004897 1.0e-23 114.0 144 43.8
Nitab4.5_0000159g0160 Nicotiana tabacum HOM05D004393 ORTHO05D004897 1.0e-23 114.0 158 43.7
Haze_17905 Corylus avellana HOM05D004393 ORTHO05D004897 1.3e-23 113.6 159 40.9
Phvul.007G090600 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 1.3e-23 113.6 143 42.7
PGSC0003DMG400009216 Solanum tuberosum HOM05D004393 ORTHO05D004897 1.3e-23 113.6 156 42.3
CANSAT25G3510 Cannabis sativa HOM05D004393 ORTHO05D004897 1.7e-23 113.2 155 43.2
Rhsim06G0097300 Rhododendron simsii HOM05D004393 ORTHO05D004897 2.2e-23 112.8 159 42.8
Lalb_Chr03g0035861 Lupinus albus HOM05D004393 ORTHO05D004897 2.9e-23 112.5 143 43.4
RcHm_v2.0_Chr6g0272171 Rosa chinensis HOM05D004393 ORTHO05D004897 2.9e-23 112.5 158 41.8
DCAR_014776 Daucus carota HOM05D004393 ORTHO05D004897 5.0e-23 111.7 150 44.0
MD10G1046600 Malus domestica HOM05D004393 ORTHO05D004897 6.5e-23 111.3 163 42.3
ClCG09G010400 Citrullus lanatus HOM05D004393 ORTHO05D004897 1.4e-22 110.2 157 42.0
Atru.chr13.1813 Acer truncatum HOM05D004393 ORTHO05D004897 4.2e-22 108.6 152 40.8
Aqoxy6G00122 Aquilegia oxysepala HOM05D004393 ORTHO05D004897 4.2e-22 108.6 151 43.0
AL1G48910 Arabidopsis lyrata HOM05D004393 ORTHO05D004897 4.2e-22 108.6 149 44.3
AT1G34355 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 4.2e-22 108.6 152 44.7
Gohir.A09G117000 Gossypium hirsutum HOM05D004393 ORTHO05D004897 4.2e-22 108.6 155 41.3
VMungo0720G0020 Vigna mungo HOM05D004393 ORTHO05D004897 5.5e-22 108.2 142 40.8
arahy.Tifrunner.gnm1.ann1.6817V4 Arachis hypogaea HOM05D004393 ORTHO05D004897 7.2e-22 107.8 145 40.7
Aa31LG6G8430 Aethionema arabicum HOM05D004393 ORTHO05D004897 9.4e-22 107.5 154 40.9
Gohir.D09G113900 Gossypium hirsutum HOM05D004393 ORTHO05D004897 9.4e-22 107.5 155 41.3
Gorai.006G131600 Gossypium raimondii HOM05D004393 ORTHO05D004897 9.4e-22 107.5 155 41.3
arahy.Tifrunner.gnm1.ann1.MV35XS Arachis hypogaea HOM05D004393 ORTHO05D004897 1.2e-21 107.1 145 41.4
Lalb_Chr01g0009981 Lupinus albus HOM05D004393 ORTHO05D004897 1.2e-21 107.1 147 41.5
THA.LOC104813097 Tarenaya hassleriana HOM05D004393 ORTHO05D004897 1.2e-21 107.1 147 40.1
CsaV3_7G024210 Cucumis sativus L. HOM05D004393 ORTHO05D004897 1.6e-21 106.7 158 41.8
MD05G1040500 Malus domestica HOM05D004393 ORTHO05D004897 2.1e-21 106.3 159 40.3
PSO170G6764 Papaver somniferum HOM05D004393 ORTHO05D004897 2.1e-21 106.3 158 41.8
Sed0026578 Sechium edule HOM05D004393 ORTHO05D004897 3.6e-21 105.5 163 40.5
MELO3C023669.2 Cucumis melo HOM05D004393 ORTHO05D004897 7.9e-21 104.4 158 40.5
CARHR033810 Cardamine hirsuta HOM05D004393 ORTHO05D004897 1.0e-20 104.0 153 43.8
Lj2g0019211 Lotus japonicus HOM05D004393 ORTHO05D004897 1.4e-20 103.6 149 40.9
Sp1g29580 Schrenkiella parvula HOM05D004393 ORTHO05D004897 1.4e-20 103.6 140 43.6
Actinidia23321 Actinidia chinensis HOM05D004393 ORTHO05D004897 2.3e-20 102.8 159 40.9
ATR0584G230 Amborella trichopoda HOM05D004393 ORTHO05D004897 3.0e-20 102.4 137 43.1
MBI16_g07683_MAGBIO Magnolia biondii HOM05D004393 ORTHO05D004897 3.0e-20 102.4 162 37.7
BcaB07g33130 Brassica carinata HOM05D004393 ORTHO05D004897 3.9e-20 102.1 141 44.7
Thhalv10006568m.g Eutrema salsugineum HOM05D004393 ORTHO05D004897 3.9e-20 102.1 147 44.2
vmacro12498 Vaccinium macrocarpon HOM05D004393 ORTHO05D004897 3.9e-20 102.1 173 39.3
FAN20G0457 Fragaria x ananassa HOM05D004393 ORTHO05D004897 5.2e-20 101.7 160 40.0
Glyma.10G215100 Glycine max HOM05D004393 ORTHO05D004897 5.2e-20 101.7 145 41.4
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 6.7e-20 101.3 162 38.9
PSO782G0828 Papaver somniferum HOM05D004393 ORTHO05D004897 8.8e-20 100.9 158 40.5
C06p11600 Brassica napus HOM05D004393 ORTHO05D004897 1.1e-19 100.5 143 44.1
Carub.0001s3249 Capsella rubella HOM05D004393 ORTHO05D004897 1.5e-19 100.1 139 43.2
TWI60G1027 Tripterygium wilfordii HOM05D004393 ORTHO05D004897 1.5e-19 100.1 147 42.9
FvH4_2g12232 Fragaria vesca HOM05D004393 ORTHO05D004897 2.0e-19 99.8 162 38.9
Cc00_g08770 Coffea canephora HOM05D004393 ORTHO05D004897 2.6e-19 99.4 150 38.7
SGA_v2.0_scaffold118G32462 Striga asiatica HOM05D004393 ORTHO05D004897 2.6e-19 99.4 158 39.9
BcaC04g20233 Brassica carinata HOM05D004393 ORTHO05D004897 7.4e-19 97.8 147 41.5
C09p46070 Brassica napus HOM05D004393 ORTHO05D004897 7.4e-19 97.8 147 41.5
BolC9t57476H Brassica oleracea HOM05D004393 ORTHO05D004897 7.4e-19 97.8 147 41.5
Medtr1g096000 Medicago truncatula HOM05D004393 ORTHO05D004897 7.4e-19 97.8 146 35.6
BolC6t36294H Brassica oleracea HOM05D004393 ORTHO05D004897 9.7e-19 97.4 143 43.4
A10p12670 Brassica napus HOM05D004393 ORTHO05D004897 1.7e-18 96.7 147 40.8
BraA10t43355Z Brassica rapa HOM05D004393 ORTHO05D004897 1.7e-18 96.7 147 40.8
BcaC08g43782 Brassica carinata HOM05D004393 ORTHO05D004897 2.2e-18 96.3 141 43.3
BraA09t38751Z Brassica rapa HOM05D004393 ORTHO05D004897 2.2e-18 96.3 143 42.7
CDE04G2403 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 2.8e-18 95.9 153 37.3
HPP92_019371 Vanilla planifolia HOM05D004393 ORTHO05D004897 8.2e-18 94.4 150 36.0
TPR.G1817 Trifolium pratense HOM05D004393 ORTHO05D004897 1.4e-17 93.6 146 33.6
Pp3c16_5970 Physcomitrium patens HOM05D043451 ORTHO05D004897 3.1e-17 92.4 145 37.9
FAN27G3511 Fragaria x ananassa HOM05D004393 ORTHO05D004897 7.0e-17 91.3 156 37.8
PGR042G3903 Punica granatum HOM05D004393 ORTHO05D004897 7.0e-17 91.3 158 36.1
Lj7C297T5 Lonicera japonica HOM05D004393 ORTHO05D004897 9.1e-17 90.9 160 37.5
SEGI_03768 Sequoiadendron giganteum HOM05D004393 ORTHO05D004897 1.2e-16 90.5 127 39.4
A09p32120 Brassica napus HOM05D004393 ORTHO05D004897 2.0e-16 89.7 136 42.6
Pp3c27_1110 Physcomitrium patens HOM05D004393 ORTHO05D004897 3.5e-16 89.0 122 39.3
SGA_v2.0_scaffold24G10548 Striga asiatica HOM05D004393 ORTHO05D004897 7.7e-16 87.8 151 37.7
TAR624G0853 Trochodendron aralioides HOM05D004393 ORTHO05D004897 7.7e-16 87.8 126 44.4
Lj5g0027195 Lotus japonicus HOM05D004393 ORTHO05D004897 1.0e-15 87.4 142 40.1
SMO351G0170 Selaginella moellendorffii HOM05D004393 ORTHO05D004897 1.7e-15 86.7 143 37.1
Ca_10603_v3 Cicer arietinum L. HOM05D004393 ORTHO05D004897 2.2e-15 86.3 142 36.6
Psat6g185840 Pisum sativum HOM05D004393 ORTHO05D004897 3.8e-15 85.5 147 34.0
Os11g0171700 Oryza sativa ssp. japonica HOM05D004393 ORTHO05D004897 2.5e-14 82.8 162 32.7
SHI09053 Sapria himalayana HOM05D004393 ORTHO05D004897 7.2e-14 81.3 147 32.7
BcaC07g37547 Brassica carinata HOM05D004393 ORTHO05D004897 2.1e-13 79.7 149 36.2
BolC8t47860H Brassica oleracea HOM05D004393 ORTHO05D004897 2.1e-13 79.7 149 36.2
BcaB06g26599 Brassica carinata HOM05D004393 ORTHO05D004897 6.1e-13 78.2 128 38.3
A08p08270 Brassica napus HOM05D004393 ORTHO05D004897 6.1e-13 78.2 126 40.5
BcaC06g35663 Brassica carinata HOM05D004393 ORTHO05D004897 8.0e-13 77.8 128 39.8
C07p12350 Brassica napus HOM05D004393 ORTHO05D004897 8.0e-13 77.8 128 39.8
ECA232G2172 Erigeron canadensis HOM05D004393 ORTHO05D004897 8.0e-13 77.8 145 32.4
BraA08t32845Z Brassica rapa HOM05D004393 ORTHO05D004897 1.0e-12 77.4 126 39.7
A07p08200 Brassica napus HOM05D004393 ORTHO05D004897 1.8e-12 76.6 143 36.4
BraA07t28604Z Brassica rapa HOM05D004393 ORTHO05D004897 1.8e-12 76.6 143 36.4
HanXRQChr09g0268931 Helianthus annuus HOM05D004393 ORTHO05D004897 3.0e-12 75.9 128 33.6
AagrBONN_evm.TU.Sc2ySwM_344.4382 Anthoceros agrestis HOM05D004393 ORTHO05D004897 4.0e-12 75.5 120 34.2
Zm00001eb091700 Zea mays HOM05D004393 ORTHO05D004897 2.0e-11 73.2 161 31.1
BcaB04g17878 Brassica carinata HOM05D004393 ORTHO05D004897 3.3e-11 72.4 138 36.2
Mapoly0005s0164 Marchantia polymorpha HOM05D004393 ORTHO05D004897 7.5e-11 71.2 120 33.3
Lsat_1_v5_gn_4_119261 Lactuca sativa HOM05D004393 ORTHO05D004897 1.7e-10 70.1 145 31.0
Pp3c5_9820 Physcomitrium patens HOM05D004393 ORTHO05D004897 1.1e-09 67.4 142 31.0
CDE12G0855 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 2.7e-08 62.8 55 52.7
BolC7t41736H Brassica oleracea HOM05D004393 ORTHO05D004897 1.3e-07 60.5 104 38.5
Glyma.20G176566 Glycine max HOM05D004393 ORTHO05D004897 2.9e-07 59.3 95 37.9
SMO231G0043 Selaginella moellendorffii HOM05D055046 ORTHO05D004897 3.2e-06 55.8 106 37.7


User provided reference genes

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