Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 5.6e-74 280.8 136 100.0
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 2.7e-68 261.9 136 90.4
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 3.5e-68 261.5 136 91.9
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 3.5e-68 261.5 136 91.9
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 4.6e-68 261.2 136 90.4
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 1.0e-67 260.0 136 89.7
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 1.7e-67 259.2 136 90.4
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 8.6e-67 256.9 136 89.0
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 8.6e-67 256.9 136 89.0
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 8.6e-67 256.9 136 89.0
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 8.6e-67 256.9 134 91.0
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 1.1e-66 256.5 136 89.0
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.1e-66 256.5 136 89.0
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 1.1e-66 256.5 136 88.2
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 1.5e-66 256.1 135 88.9
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 1.9e-66 255.8 136 88.2
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 3.3e-66 255.0 136 87.5
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 3.3e-66 255.0 135 88.9
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 3.3e-66 255.0 136 87.5
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 4.3e-66 254.6 132 90.9
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 4.3e-66 254.6 135 88.9
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 4.3e-66 254.6 136 88.2
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 5.6e-66 254.2 136 86.8
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 5.6e-66 254.2 136 87.5
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 5.6e-66 254.2 136 86.8
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 7.3e-66 253.8 136 86.8
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 7.3e-66 253.8 135 88.1
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 1.2e-65 253.1 136 86.8
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 1.2e-65 253.1 136 88.2
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 1.2e-65 253.1 136 87.5
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 87.5
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 86.8
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 86.8
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 86.8
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 86.8
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 87.5
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.1e-65 252.3 136 86.0
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.1e-65 252.3 136 86.8
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 2.1e-65 252.3 133 88.7
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.8e-65 251.9 136 86.8
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.8e-65 251.9 136 86.8
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 2.8e-65 251.9 136 86.8
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 2.8e-65 251.9 136 86.0
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 2.8e-65 251.9 135 87.4
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 4.7e-65 251.1 136 86.0
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 4.7e-65 251.1 136 86.0
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 4.7e-65 251.1 136 85.3
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 4.7e-65 251.1 136 85.3
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 4.7e-65 251.1 135 85.2
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 6.2e-65 250.8 135 86.7
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 1.1e-64 250.0 136 84.6
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 1.1e-64 250.0 136 84.6
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 1.1e-64 250.0 136 84.6
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 1.1e-64 250.0 136 84.6
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 1.1e-64 250.0 135 85.9
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 1.1e-64 250.0 136 86.0
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 1.4e-64 249.6 136 86.8
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 1.8e-64 249.2 136 85.3
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 1.8e-64 249.2 136 83.8
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 1.8e-64 249.2 136 83.1
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 2.4e-64 248.8 136 84.6
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 2.4e-64 248.8 136 85.3
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 3.1e-64 248.4 136 83.8
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 3.1e-64 248.4 136 85.3
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 4.0e-64 248.1 136 85.3
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 5.2e-64 247.7 136 86.0
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 5.2e-64 247.7 136 83.1
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 5.2e-64 247.7 136 85.3
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 6.8e-64 247.3 136 85.3
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 5.8e-63 244.2 136 84.6
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 9.9e-63 243.4 136 86.0
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 4.1e-61 238.0 136 83.1
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 5.4e-61 237.7 136 81.6
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 5.4e-61 237.7 136 81.6
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 7.1e-61 237.3 136 81.6
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 7.1e-61 237.3 135 82.2
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 9.2e-61 236.9 136 81.6
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 9.2e-61 236.9 138 82.6
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 1.2e-60 236.5 136 80.1
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 1.2e-60 236.5 136 80.1
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 2.7e-60 235.3 136 80.1
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 6.0e-60 234.2 136 80.1
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 7.8e-60 233.8 136 79.4
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 1.0e-59 233.4 129 86.8
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 1.3e-59 233.0 136 78.7
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 1.3e-59 233.0 136 78.7
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 1.7e-59 232.6 131 85.5
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 1.7e-59 232.6 136 78.7
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 2.3e-59 232.3 124 88.7
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 3.0e-59 231.9 136 80.9
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 3.0e-59 231.9 124 88.7
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 1.9e-58 229.2 124 87.9
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 5.6e-58 227.6 124 86.3
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 7.3e-58 227.3 130 82.3
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 9.6e-58 226.9 124 84.7
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 9.6e-58 226.9 124 86.3
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 8.1e-57 223.8 119 88.2
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 4.0e-56 221.5 141 73.8
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 7.6e-55 217.2 135 74.1
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 1.3e-54 216.5 124 85.5
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 1.7e-54 216.1 130 78.5
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 4.9e-54 214.5 133 75.9
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 8.4e-54 213.8 206 55.3
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 4.2e-53 211.5 134 75.4
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 9.3e-53 210.3 133 73.7
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 3.5e-52 208.4 134 75.4
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 1.9e-50 202.6 131 72.5
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 3.3e-50 201.8 120 79.2
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 2.1e-49 199.1 131 71.0
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 6.2e-49 197.6 136 70.6
BcaC05g27681 Brassica carinata HOM05D005489 ORTHO05D006629 5.3e-48 194.5 121 77.7
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 1.1e-45 186.8 136 65.4
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 7.1e-45 184.1 134 64.9
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 4.6e-44 181.4 153 60.8
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 4.3e-42 174.9 92 89.1
CBR_g30829 Chara braunii HOM05D005489 ORTHO05D006629 1.1e-40 170.2 125 64.0
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 9.0e-40 167.2 125 69.6
Haze_00523 Corylus avellana HOM05D005489 ORTHO05D006629 2.5e-34 149.1 76 88.2
DCAR_023128 Daucus carota HOM05D005489 ORTHO05D006629 1.3e-33 146.7 75 86.7
CANSAT25G2554 Cannabis sativa HOM05D005489 ORTHO05D006629 1.6e-33 146.4 92 72.8
ClCG03G009110 Citrullus lanatus HOM05D005489 ORTHO05D006629 1.6e-33 146.4 74 87.8
CsaV3_5G023520 Cucumis sativus L. HOM05D005489 ORTHO05D006629 1.6e-33 146.4 74 87.8
Cfa015959 Carpinus fangiana HOM05D005489 ORTHO05D006629 3.7e-33 145.2 91 76.9
BcaC05g27682 Brassica carinata HOM05D005489 ORTHO05D006629 4.8e-33 144.8 74 85.1
C05p36640 Brassica napus HOM05D005489 ORTHO05D006629 4.8e-33 144.8 74 85.1
TAR127G0005 Trochodendron aralioides HOM05D005489 ORTHO05D006629 4.8e-33 144.8 75 86.7
ATR0121G008 Amborella trichopoda HOM05D005489 ORTHO05D006629 1.2e-31 140.2 74 85.1
Nn2g15248 Nelumbo nucifera HOM05D005489 ORTHO05D006629 7.1e-29 131.0 73 79.5
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 2.3e-27 125.9 140 52.9
Oeu050268.1 Olea europaea HOM05D005489 ORTHO05D006629 3.3e-26 122.1 76 75.0
Sopen11g008620 Solanum pennellii HOM05D000147 ORTHO05D004360 1.2e-23 113.6 72 76.4
Cre01.g042950 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 2.0e-23 112.8 133 40.6
PRCOL_00003843 Prasinoderma coloniale HOM05D005489 ORTHO05D006629 9.7e-18 94.0 117 47.9
ClCG03G009140 Citrullus lanatus HOM05D005489 ORTHO05D006629 4.1e-16 88.6 50 86.0
SalBow7G4082 Salvia bowleyana HOM05D005489 ORTHO05D006629 4.1e-16 88.6 165 41.2
Eucgr.F04378 Eucalyptus grandis HOM05D005489 ORTHO05D006629 5.3e-16 88.2 47 83.0
Solyc11g013660.1 Solanum lycopersicum HOM05D005489 ORTHO05D006629 6.7e-11 71.2 70 57.1
SalBow7G1125 Salvia bowleyana HOM05D002998 ORTHO05D006629 4.8e-09 65.1 35 74.3
Os08g0469200 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 6.3e-09 64.7 67 52.2
PRCOL_00003098 Prasinoderma coloniale HOM05D001685 ORTHO05D007488 3.1e-08 62.4 141 32.6


User provided reference genes

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