Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA285G0004 Erigeron canadensis HOM05D006263 ORTHO05D007549 3.0e-201 704.9 346 100.0
HanXRQChr01g0024721 Helianthus annuus HOM05D006263 ORTHO05D007549 4.8e-154 548.1 344 77.6
Lsat_1_v5_gn_1_59641 Lactuca sativa HOM05D006263 ORTHO05D007549 1.1e-145 520.4 347 72.9
DCAR_013689 Daucus carota HOM05D006263 ORTHO05D007549 8.5e-135 484.2 339 67.8
Dinv14580 Davidia involucrata HOM05D006263 ORTHO05D007549 1.9e-134 483.0 340 68.8
Lj2A357T95 Lonicera japonica HOM05D006263 ORTHO05D007549 1.1e-131 473.8 342 69.0
Oeu060008.1 Olea europaea HOM05D006263 ORTHO05D007549 4.8e-130 468.4 349 64.8
Migut.B01469 Erythranthe guttata HOM05D006263 ORTHO05D007549 7.7e-128 461.1 342 63.5
Rhsim04G0087300 Rhododendron simsii HOM05D006263 ORTHO05D007549 2.2e-127 459.5 341 65.4
Aqoxy1G00489 Aquilegia oxysepala HOM05D006263 ORTHO05D007549 6.5e-127 458.0 343 65.0
Nn7g35844 Nelumbo nucifera HOM05D006263 ORTHO05D007549 6.5e-127 458.0 337 65.9
GSVIVG01033398001 Vitis vinifera HOM05D006263 ORTHO05D007549 6.5e-127 458.0 339 64.3
Ciclev10020896m.g Citrus clementina HOM05D006263 ORTHO05D007549 1.9e-126 456.4 347 65.1
PSO339G1401 Papaver somniferum HOM05D006263 ORTHO05D007549 5.5e-126 454.9 342 65.5
PSO384G1918 Papaver somniferum HOM05D006263 ORTHO05D007549 1.2e-125 453.8 342 65.5
Haze_19445 Corylus avellana HOM05D006263 ORTHO05D007549 2.7e-125 452.6 342 63.5
CSS0025413 Camellia sinensis var. sinensis HOM05D006263 ORTHO05D007549 4.7e-125 451.8 335 66.3
Potri.019G034400 Populus trichocarpa HOM05D006263 ORTHO05D007549 1.0e-124 450.7 344 62.8
Cfa016439 Carpinus fangiana HOM05D006263 ORTHO05D007549 2.3e-124 449.5 342 63.5
Haze_19416 Corylus avellana HOM05D006263 ORTHO05D007549 3.0e-124 449.1 342 62.9
C09p58780 Brassica napus HOM05D006263 ORTHO05D007549 8.8e-124 447.6 337 62.6
CAN.G216.5 Capsicum annuum HOM05D006263 ORTHO05D007549 1.1e-123 447.2 340 62.9
BraA10t44195Z Brassica rapa HOM05D006263 ORTHO05D007549 1.5e-123 446.8 337 62.3
Nitab4.5_0000001g0100 Nicotiana tabacum HOM05D006263 ORTHO05D007549 1.5e-123 446.8 337 62.3
ClCG05G001960 Citrullus lanatus HOM05D006263 ORTHO05D007549 2.0e-123 446.4 339 62.8
Sabra19G0044500 Salix brachista HOM05D006263 ORTHO05D007549 2.6e-123 446.0 344 63.1
Gorai.007G289300 Gossypium raimondii HOM05D006263 ORTHO05D007549 3.3e-123 445.7 342 62.0
Manes.09G141600 Manihot esculenta HOM05D006263 ORTHO05D007549 3.3e-123 445.7 343 62.4
COL.COLO4_13602 Corchorus olitorius HOM05D006263 ORTHO05D007549 5.7e-123 444.9 342 62.0
Solyc10g050850.2 Solanum lycopersicum HOM05D006263 ORTHO05D007549 5.7e-123 444.9 340 63.2
SGA_v2.0_scaffold145G36025 Striga asiatica HOM05D006263 ORTHO05D007549 5.7e-123 444.9 342 61.1
Nitab4.5_0002825g0060 Nicotiana tabacum HOM05D006263 ORTHO05D007549 7.4e-123 444.5 337 62.3
Carub.0006s1648 Capsella rubella HOM05D006263 ORTHO05D007549 1.3e-122 443.7 337 63.5
unitig_26.g9717 Utricularia gibba HOM05D006263 ORTHO05D007549 1.7e-122 443.4 337 62.3
Cc06_g22910 Coffea canephora HOM05D006263 ORTHO05D007549 2.2e-122 443.0 335 63.6
Sopen10g022420 Solanum pennellii HOM05D006263 ORTHO05D007549 2.2e-122 443.0 340 62.9
PGSC0003DMG400008259 Solanum tuberosum HOM05D006263 ORTHO05D007549 2.2e-122 443.0 340 63.5
Atru.chr2.1379 Acer truncatum HOM05D006263 ORTHO05D007549 2.8e-122 442.6 347 65.1
Gohir.A11G259300 Gossypium hirsutum HOM05D006263 ORTHO05D007549 2.8e-122 442.6 342 61.7
TAR623G0038 Trochodendron aralioides HOM05D006263 ORTHO05D007549 3.7e-122 442.2 347 63.7
BcaC04g18720 Brassica carinata HOM05D006263 ORTHO05D007549 4.8e-122 441.8 337 62.0
BolC9t58720H Brassica oleracea HOM05D006263 ORTHO05D007549 4.8e-122 441.8 338 62.1
A10p21320 Brassica napus HOM05D006263 ORTHO05D007549 6.3e-122 441.4 337 61.4
PGR042G1093 Punica granatum HOM05D006263 ORTHO05D007549 6.3e-122 441.4 339 63.1
Duzib177G1028 Durio zibethinus HOM05D006263 ORTHO05D007549 8.2e-122 441.0 346 61.8
Gohir.D11G269500 Gossypium hirsutum HOM05D006263 ORTHO05D007549 8.2e-122 441.0 342 61.4
Prupe.7G003700 Prunus persica HOM05D006263 ORTHO05D007549 1.1e-121 440.7 337 63.2
MELO3C006156.2 Cucumis melo HOM05D006263 ORTHO05D007549 1.8e-121 439.9 341 62.5
TWI34G1357 Tripterygium wilfordii HOM05D006263 ORTHO05D007549 1.8e-121 439.9 347 61.1
Thhalv10013996m.g Eutrema salsugineum HOM05D006263 ORTHO05D007549 3.1e-121 439.1 337 62.3
MSTRG.20649 Avicennia marina HOM05D006263 ORTHO05D007549 5.3e-121 438.3 342 62.3
Thecc.05G294200 Theobroma cacao HOM05D006263 ORTHO05D007549 5.3e-121 438.3 349 60.7
AT5G18200 Arabidopsis thaliana HOM05D006263 ORTHO05D007549 9.1e-121 437.6 337 61.4
Sp6g26120 Schrenkiella parvula HOM05D006263 ORTHO05D007549 1.2e-120 437.2 337 62.0
BcaB08g36696 Brassica carinata HOM05D006263 ORTHO05D007549 1.5e-120 436.8 335 61.5
Potri.006G233200 Populus trichocarpa HOM05D006263 ORTHO05D007549 1.5e-120 436.8 339 60.8
Hund06464 Selenicereus undatus HOM05D006263 ORTHO05D007549 1.5e-120 436.8 340 60.6
Medtr6g029470 Medicago truncatula HOM05D006263 ORTHO05D007549 2.0e-120 436.4 338 63.0
AL6G29400 Arabidopsis lyrata HOM05D006263 ORTHO05D007549 2.6e-120 436.0 338 63.0
Psat1g096040 Pisum sativum HOM05D006263 ORTHO05D007549 4.5e-120 435.3 339 63.1
CiPaw.10G000900 Carya illinoinensis HOM05D006263 ORTHO05D007549 1.0e-119 434.1 343 61.8
Lalb_Chr06g0173981 Lupinus albus HOM05D006263 ORTHO05D007549 1.7e-119 433.3 340 61.8
THA.LOC104827270 Tarenaya hassleriana HOM05D006263 ORTHO05D007549 1.7e-119 433.3 338 62.4
CARHR194860 Cardamine hirsuta HOM05D006263 ORTHO05D007549 8.5e-119 431.0 339 61.7
Phvul.004G080400 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 1.1e-118 430.6 341 61.6
Ca_04490_v3 Cicer arietinum L. HOM05D006263 ORTHO05D007549 3.2e-118 429.1 339 61.7
Lj6g0008715 Lotus japonicus HOM05D006263 ORTHO05D007549 5.5e-118 428.3 341 61.9
QL07p019666 Quercus lobata HOM05D006263 ORTHO05D007549 5.5e-118 428.3 342 60.2
AUR62012878 Chenopodium quinoa HOM05D006263 ORTHO05D007549 1.6e-117 426.8 339 61.4
Glyma.16G153300 Glycine max HOM05D006263 ORTHO05D007549 1.6e-117 426.8 341 61.0
Sabra19G0042300 Salix brachista HOM05D006263 ORTHO05D007549 2.1e-117 426.4 390 55.9
AUR62027102 Chenopodium quinoa HOM05D006263 ORTHO05D007549 2.7e-117 426.0 339 60.8
VMungo0464G2181 Vigna mungo HOM05D006263 ORTHO05D007549 1.4e-116 423.7 338 61.2
CANSAT78G2484 Cannabis sativa HOM05D006263 ORTHO05D007549 1.8e-116 423.3 339 60.2
Eucgr.L01413 Eucalyptus grandis HOM05D006263 ORTHO05D007549 3.0e-116 422.5 346 59.2
Eucgr.K02258 Eucalyptus grandis HOM05D006263 ORTHO05D007549 8.8e-116 421.0 346 59.0
HPP92_015639 Vanilla planifolia HOM05D006263 ORTHO05D007549 8.8e-116 421.0 339 60.2
MD12G1003100 Malus domestica HOM05D006263 ORTHO05D007549 1.1e-115 420.6 343 59.5
CDE02G1162 Ceratophyllum demersum HOM05D006263 ORTHO05D007549 2.0e-115 419.9 345 59.7
Peaxi162Scf00076g01055 Petunia axillaris HOM05D006263 ORTHO05D007549 2.2e-114 416.4 343 60.1
Aa31LG11G11400 Aethionema arabicum HOM05D006263 ORTHO05D007549 1.1e-113 414.1 371 56.1
RcHm_v2.0_Chr3g0497171 Rosa chinensis HOM05D006263 ORTHO05D007549 1.8e-113 413.3 340 58.8
arahy.Tifrunner.gnm1.ann1.NGU2DL Arachis hypogaea HOM05D006263 ORTHO05D007549 3.1e-113 412.5 336 60.4
TAR369G0989 Trochodendron aralioides HOM05D006263 ORTHO05D007549 9.1e-113 411.0 346 61.3
FvH4_1g28080 Fragaria vesca HOM05D006263 ORTHO05D007549 8.5e-111 404.4 341 58.9
FAN19G0970 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.1e-110 404.1 341 58.9
FAN23G2537 Fragaria x ananassa HOM05D006263 ORTHO05D007549 7.2e-110 401.4 341 58.1
ATR0697G038 Amborella trichopoda HOM05D006263 ORTHO05D007549 9.4e-110 401.0 380 54.7
FAN28G0550 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.6e-109 400.2 341 57.8
FAN26G0246 Fragaria x ananassa HOM05D006263 ORTHO05D007549 2.0e-107 393.3 341 57.5
EL10Ac9g22064 Beta vulgaris HOM05D006263 ORTHO05D007549 3.3e-107 392.5 342 57.3
Sc18g0007080 Simmondsia chinensis HOM05D006263 ORTHO05D007549 7.5e-107 391.3 342 57.6
FAN28G1368 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.7e-106 390.2 341 56.3
SalBow5G0264 Salvia bowleyana HOM05D006263 ORTHO05D007549 2.8e-106 389.4 341 56.0
Zm00001eb301000 Zea mays HOM05D006263 ORTHO05D007549 3.7e-106 389.0 341 54.5
Ca_04491_v3 Cicer arietinum L. HOM05D006263 ORTHO05D000429 1.4e-105 387.1 337 56.7
Cpa.g.sc51.112 Carica papaya HOM05D006263 ORTHO05D007549 2.0e-104 383.3 349 56.7
Ah.01g007390 Amaranthus hybridus HOM05D006263 ORTHO05D007549 1.0e-103 380.9 435 47.1
vmacro09144 Vaccinium macrocarpon HOM05D006263 ORTHO05D007549 1.3e-103 380.6 340 57.1
Psat1g096000 Pisum sativum HOM05D006263 ORTHO05D007549 5.0e-103 378.6 337 55.5
TPR.G34629 Trifolium pratense HOM05D006263 ORTHO05D007549 4.2e-102 375.6 337 54.6
Actinidia17306 Actinidia chinensis HOM05D000412 ORTHO05D000429 9.4e-102 374.4 288 65.6
Medtr6g029530 Medicago truncatula HOM05D006263 ORTHO05D007549 1.6e-101 373.6 337 53.7
Oeu003888.1 Olea europaea HOM05D006263 ORTHO05D007549 2.8e-98 362.8 271 63.5
MBI11_g31289_MAGBIO Magnolia biondii HOM05D006263 ORTHO05D007549 3.1e-97 359.4 348 55.2
SEGI_37923 Sequoiadendron giganteum HOM05D006263 ORTHO05D007549 4.4e-91 339.0 339 51.0
CsaV3_3G009370 Cucumis sativus L. HOM05D006263 ORTHO05D007549 9.8e-83 311.2 254 61.8
Sed0020840 Sechium edule HOM05D006263 ORTHO05D007549 6.4e-82 308.5 255 60.0
Os07g0171200 Oryza sativa ssp. japonica HOM05D006263 ORTHO05D007549 1.9e-78 297.0 230 59.1
Eucgr.A02096 Eucalyptus grandis HOM05D006263 ORTHO05D007549 8.0e-77 291.6 289 52.2
Hma1.2p1_0376F.1_g139140 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 6.4e-74 282.0 183 69.4
Hma1.2p1_0376F.1_g139150 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 6.4e-74 282.0 183 69.4
Pp3c17_20460 Physcomitrium patens HOM05D006263 ORTHO05D007549 3.9e-71 272.7 344 42.7
Mapoly0103s0062 Marchantia polymorpha HOM05D006263 ORTHO05D007549 1.1e-68 264.6 343 41.7
SMO367G0539 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 2.3e-63 246.9 339 38.9
FAN16G0439 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.2e-51 208.0 205 55.1
RhsimUnG0048700 Rhododendron simsii HOM05D006263 ORTHO05D007549 7.3e-46 188.7 179 55.3
Pp3c2_1350 Physcomitrium patens HOM05D006263 ORTHO05D007549 2.4e-44 183.7 259 39.4
FAN18G1683 Fragaria x ananassa HOM05D000349 ORTHO05D007549 2.4e-41 173.7 202 48.5
FAN06G4136 Fragaria x ananassa HOM05D000349 ORTHO05D007549 2.3e-39 167.2 208 46.6
Hma1.2p1_0376F.1_g139120 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 3.0e-39 166.8 171 53.8
FAN18G1526 Fragaria x ananassa HOM05D000349 ORTHO05D007549 1.5e-35 154.5 181 49.2
FAN24G0044 Fragaria x ananassa HOM05D006263 ORTHO05D007549 7.9e-32 142.1 233 38.2
TPR.G18346 Trifolium pratense HOM05D006263 ORTHO05D007549 6.0e-24 115.9 81 65.4
SMO275G0019 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 1.3e-21 108.2 129 41.1
SMO367G0580 Selaginella moellendorffii HOM05D006263 ORTHO05D378923 7.2e-17 92.4 107 41.1
FAN15G0659 Fragaria x ananassa HOM05D006263 ORTHO05D007549 3.3e-14 83.6 171 34.5
FAN22G0951 Fragaria x ananassa HOM05D000005 ORTHO05D000294 2.8e-13 80.5 79 50.6
FAN25G1138 Fragaria x ananassa HOM05D012843 ORTHO05D017973 2.8e-13 80.5 79 50.6
FAN03G3217 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.1e-12 78.6 58 60.3
FAN11G1140 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.1e-12 78.6 58 60.3
FAN12G3135 Fragaria x ananassa HOM05D000005 ORTHO05D000294 1.1e-12 78.6 79 49.4
FAN22G0360 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.1e-12 78.6 58 60.3
FAN22G1437 Fragaria x ananassa HOM05D002676 ORTHO05D007549 9.1e-12 75.5 58 58.6
FAN09G2057 Fragaria x ananassa HOM05D000005 ORTHO05D000294 1.1e-09 68.6 60 56.7
FAN08G1181 Fragaria x ananassa HOM05D003914 ORTHO05D001189 7.2e-09 65.9 51 56.9
FAN27G3525 Fragaria x ananassa HOM05D003914 ORTHO05D001189 7.2e-09 65.9 51 56.9
Phvul.004G082000 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 8.8e-07 58.9 59 45.8


User provided reference genes

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