Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 1.3e-32 142.5 74 100.0
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 2.2e-24 115.2 75 82.7
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 2.9e-24 114.8 65 89.2
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 3.5e-22 107.8 71 77.5
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 7.8e-22 106.7 63 84.1
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 7.8e-22 106.7 63 84.1
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 6.6e-21 103.6 70 78.6
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 6.6e-21 103.6 71 74.6
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 1.1e-20 102.8 71 73.2
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 1.5e-20 102.4 71 71.8
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.9e-20 102.1 63 79.4
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 2.5e-20 101.7 65 80.0
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 2.5e-20 101.7 69 73.9
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 2.5e-20 101.7 60 81.7
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.5e-20 101.7 71 71.8
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 3.3e-20 101.3 71 70.4
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 3.3e-20 101.3 60 81.7
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 3.3e-20 101.3 72 73.6
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 4.3e-20 100.9 67 77.6
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 4.3e-20 100.9 70 72.9
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 5.6e-20 100.5 71 76.1
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 5.6e-20 100.5 71 76.1
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 5.6e-20 100.5 70 75.7
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 5.6e-20 100.5 72 70.8
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 5.6e-20 100.5 71 71.8
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 5.6e-20 100.5 63 82.5
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 7.3e-20 100.1 64 79.7
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 7.3e-20 100.1 71 73.2
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 7.3e-20 100.1 66 75.8
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 7.3e-20 100.1 73 69.9
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 7.3e-20 100.1 71 74.6
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 7.3e-20 100.1 69 72.5
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 7.3e-20 100.1 69 72.5
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 7.3e-20 100.1 71 74.6
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 9.6e-20 99.8 65 80.0
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 9.6e-20 99.8 71 76.1
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 9.6e-20 99.8 69 75.4
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 9.6e-20 99.8 60 78.3
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 9.6e-20 99.8 69 72.5
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 1.3e-19 99.4 71 67.6
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.3e-19 99.4 71 70.4
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 1.3e-19 99.4 71 70.4
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 1.3e-19 99.4 70 75.7
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.6e-19 99.0 70 74.3
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 1.6e-19 99.0 67 77.6
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.6e-19 99.0 67 77.6
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.6e-19 99.0 67 77.6
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 1.6e-19 99.0 63 77.8
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 1.6e-19 99.0 72 69.4
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.6e-19 99.0 68 72.1
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 2.1e-19 98.6 67 77.6
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 2.1e-19 98.6 69 73.9
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 2.1e-19 98.6 71 73.2
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 2.1e-19 98.6 71 71.8
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 2.1e-19 98.6 65 73.8
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 2.1e-19 98.6 58 84.5
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 2.8e-19 98.2 71 73.2
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 2.8e-19 98.2 65 75.4
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 2.8e-19 98.2 72 70.8
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 2.8e-19 98.2 72 70.8
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 2.8e-19 98.2 60 80.0
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 3.6e-19 97.8 58 84.5
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 3.6e-19 97.8 58 84.5
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 3.6e-19 97.8 77 71.4
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 3.6e-19 97.8 73 68.5
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 4.8e-19 97.4 58 84.5
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 4.8e-19 97.4 66 72.7
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 6.2e-19 97.1 64 75.0
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 6.2e-19 97.1 68 67.6
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 6.2e-19 97.1 69 71.0
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 8.1e-19 96.7 72 69.4
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 8.1e-19 96.7 60 76.7
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 8.1e-19 96.7 67 76.1
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 1.1e-18 96.3 72 69.4
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 1.1e-18 96.3 58 82.8
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 1.1e-18 96.3 66 75.8
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 1.1e-18 96.3 73 69.9
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 1.1e-18 96.3 74 70.3
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 1.1e-18 96.3 59 79.7
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 1.1e-18 96.3 58 82.8
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.1e-18 96.3 71 69.0
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 1.4e-18 95.9 68 70.6
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.4e-18 95.9 67 76.1
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 1.4e-18 95.9 72 68.1
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 1.4e-18 95.9 72 72.2
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 1.4e-18 95.9 71 66.2
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.4e-18 95.9 73 67.1
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 1.4e-18 95.9 71 73.2
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 1.4e-18 95.9 72 72.2
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 1.8e-18 95.5 58 82.8
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 1.8e-18 95.5 55 83.6
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 1.8e-18 95.5 71 69.0
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.4e-18 95.1 60 78.3
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 2.4e-18 95.1 71 66.2
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 3.1e-18 94.7 71 63.4
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 3.1e-18 94.7 72 66.7
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 4.0e-18 94.4 74 67.6
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 4.0e-18 94.4 67 76.1
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 5.3e-18 94.0 72 68.1
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 5.3e-18 94.0 58 79.3
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 6.9e-18 93.6 58 79.3
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 6.9e-18 93.6 58 79.3
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 6.9e-18 93.6 58 79.3
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 6.9e-18 93.6 58 79.3
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 6.9e-18 93.6 59 78.0
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 6.9e-18 93.6 72 68.1
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 9.0e-18 93.2 74 67.6
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 9.0e-18 93.2 60 75.0
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 9.0e-18 93.2 71 67.6
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 1.2e-17 92.8 56 80.4
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 1.2e-17 92.8 60 76.7
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 1.5e-17 92.4 57 77.2
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 1.5e-17 92.4 60 73.3
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 1.5e-17 92.4 71 66.2
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 2.0e-17 92.0 68 70.6
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 2.0e-17 92.0 68 70.6
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 2.0e-17 92.0 71 66.2
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 2.0e-17 92.0 71 66.2
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 2.0e-17 92.0 72 66.7
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 2.0e-17 92.0 72 65.3
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 2.6e-17 91.7 68 67.6
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 3.4e-17 91.3 66 69.7
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 3.4e-17 91.3 54 85.2
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 4.5e-17 90.9 58 75.9
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 4.5e-17 90.9 69 68.1
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 4.5e-17 90.9 70 65.7
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 7.6e-17 90.1 70 67.1
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 9.9e-17 89.7 64 73.4
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.3e-16 89.4 69 68.1
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 1.7e-16 89.0 54 81.5
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 1.7e-16 89.0 60 68.3
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 1.7e-16 89.0 70 64.3
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 6.4e-16 87.0 71 62.0
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 8.4e-16 86.7 77 62.3
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 8.4e-16 86.7 77 62.3
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 3.2e-15 84.7 57 71.9
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 4.2e-15 84.3 54 75.9
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 2.1e-14 82.0 60 68.3
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 3.5e-14 81.3 67 62.7
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 2.3e-13 78.6 58 69.0
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.3e-13 78.6 58 69.0
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 8.7e-13 76.6 58 60.3
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 1.5e-12 75.9 58 63.8
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 1.9e-12 75.5 52 73.1
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 2.5e-12 75.1 61 57.4
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 4.3e-12 74.3 73 47.9
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 9.6e-12 73.2 49 79.6
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 9.6e-12 73.2 56 57.1
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 1.3e-11 72.8 68 52.9
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 3.7e-11 71.2 48 70.8
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 1.1e-10 69.7 50 64.0
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 1.1e-10 69.7 53 64.2
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 1.4e-10 69.3 51 66.7
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 1.8e-10 68.9 35 94.3
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 1.8e-10 68.9 58 53.4
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 4.2e-07 57.8 47 51.1


User provided reference genes

Program Settings