Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G3797 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.5e-103 380.2 309 100.0
HanXRQChr01g0009481 Helianthus annuus HOM05D004676 ORTHO05D005661 6.1e-68 261.9 176 83.5
Lsat_1_v5_gn_5_170600 Lactuca sativa HOM05D004676 ORTHO05D005661 1.5e-61 240.7 136 89.7
ECA233G5350 Erigeron canadensis HOM05D004676 ORTHO05D005661 4.7e-60 235.7 174 77.0
TAR633G1457 Trochodendron aralioides HOM05D004676 ORTHO05D005661 4.7e-60 235.7 178 73.6
Prupe.6G077300 Prunus persica HOM05D004676 ORTHO05D005661 5.2e-59 232.3 217 65.0
Manes.02G133000 Manihot esculenta HOM05D004676 ORTHO05D005661 7.5e-58 228.4 173 66.5
Dinv12426 Davidia involucrata HOM05D004676 ORTHO05D005661 9.8e-58 228.0 177 74.0
Potri.001G148000 Populus trichocarpa HOM05D004676 ORTHO05D005661 1.3e-57 227.6 174 73.6
Nn1g00565 Nelumbo nucifera HOM05D004676 ORTHO05D005661 3.7e-57 226.1 177 74.0
CiPaw.13G094200 Carya illinoinensis HOM05D004676 ORTHO05D005661 1.1e-56 224.6 179 73.2
Haze_24097 Corylus avellana HOM05D004676 ORTHO05D005661 1.8e-56 223.8 175 73.1
Sabra01G0116300 Salix brachista HOM05D004676 ORTHO05D005661 4.1e-56 222.6 172 67.4
Sabra01G0117800 Salix brachista HOM05D004676 ORTHO05D005661 4.1e-56 222.6 172 67.4
Gohir.A07G098600 Gossypium hirsutum HOM05D004676 ORTHO05D005661 7.0e-56 221.9 176 72.7
Gohir.D07G102900 Gossypium hirsutum HOM05D004676 ORTHO05D005661 7.0e-56 221.9 176 72.7
Gorai.001G110800 Gossypium raimondii HOM05D004676 ORTHO05D005661 7.0e-56 221.9 176 72.7
Haze_12047 Corylus avellana HOM05D004676 ORTHO05D005661 9.1e-56 221.5 176 76.1
Lj1P153T22 Lonicera japonica HOM05D004676 ORTHO05D005661 1.2e-55 221.1 134 80.6
Thecc.09G321600 Theobroma cacao HOM05D004676 ORTHO05D005661 1.2e-55 221.1 176 73.3
Duzib168G2248 Durio zibethinus HOM05D004676 ORTHO05D005661 3.5e-55 219.5 172 73.8
TAR100G0004 Trochodendron aralioides HOM05D004676 ORTHO05D005661 3.5e-55 219.5 216 59.7
SGA_v2.0_scaffold154G37155 Striga asiatica HOM05D004676 ORTHO05D005661 7.7e-55 218.4 187 72.2
Cpa.g.sc81.149 Carica papaya HOM05D004676 ORTHO05D005661 1.0e-54 218.0 174 72.4
Hma1.2p1_0418F.1_g149200 Hydrangea macrophylla HOM05D004676 ORTHO05D005661 1.0e-54 218.0 137 78.1
Manes.01G173800 Manihot esculenta HOM05D004676 ORTHO05D005661 1.0e-54 218.0 134 79.9
QL09p008735 Quercus lobata HOM05D004676 ORTHO05D005661 1.0e-54 218.0 137 78.8
Rhsim01G0227600 Rhododendron simsii HOM05D004676 ORTHO05D005661 1.0e-54 218.0 177 73.4
CsaV3_6G016860 Cucumis sativus L. HOM05D004676 ORTHO05D005661 1.7e-54 217.2 173 72.3
Cpa.g.sc161.42 Carica papaya HOM05D004676 ORTHO05D005661 2.9e-54 216.5 171 73.7
vmacro05212 Vaccinium macrocarpon HOM05D004676 ORTHO05D005661 8.5e-54 214.9 132 81.8
unitig_747.g22032 Utricularia gibba HOM05D004676 ORTHO05D005661 1.1e-53 214.5 214 60.3
Cfa011505 Carpinus fangiana HOM05D004676 ORTHO05D005661 1.5e-53 214.2 176 68.2
MELO3C025917.2 Cucumis melo HOM05D004676 ORTHO05D005661 1.5e-53 214.2 171 71.9
Sc21g0005490 Simmondsia chinensis HOM05D004676 ORTHO05D005661 1.9e-53 213.8 180 71.7
Oeu019194.1 Olea europaea HOM05D004676 ORTHO05D005661 2.5e-53 213.4 180 71.1
Ciclev10028807m.g Citrus clementina HOM05D004676 ORTHO05D005661 3.2e-53 213.0 181 71.3
unitig_0.g1557 Utricularia gibba HOM05D004676 ORTHO05D005661 4.2e-53 212.6 173 71.1
Nitab4.5_0005880g0060 Nicotiana tabacum HOM05D004676 ORTHO05D005661 1.6e-52 210.7 177 74.0
Thecc.09G321800 Theobroma cacao HOM05D004676 ORTHO05D005661 2.1e-52 210.3 171 70.2
Atru.chr3.3906 Acer truncatum HOM05D004676 ORTHO05D005661 6.1e-52 208.8 177 70.1
CiPaw.14G068300 Carya illinoinensis HOM05D004676 ORTHO05D005661 6.1e-52 208.8 132 78.8
Nitab4.5_0001424g0070 Nicotiana tabacum HOM05D004676 ORTHO05D005661 6.1e-52 208.8 177 73.4
Peaxi162Scf00045g00052 Petunia axillaris HOM05D004676 ORTHO05D005661 6.1e-52 208.8 177 71.8
RcHm_v2.0_Chr5g0064541 Rosa chinensis HOM05D004676 ORTHO05D005661 6.1e-52 208.8 174 69.5
ClCG02G020150 Citrullus lanatus HOM05D004676 ORTHO05D005661 8.0e-52 208.4 129 76.7
PGSC0003DMG400018489 Solanum tuberosum HOM05D004676 ORTHO05D005661 1.4e-51 207.6 179 72.1
MD03G1093300 Malus domestica HOM05D004676 ORTHO05D005661 1.8e-51 207.2 179 67.6
CAN.G137.34 Capsicum annuum HOM05D004676 ORTHO05D005661 2.3e-51 206.8 178 72.5
TAR588G0001 Trochodendron aralioides HOM05D004676 ORTHO05D005661 2.3e-51 206.8 138 73.2
Eucgr.E01963 Eucalyptus grandis HOM05D004676 ORTHO05D005661 3.0e-51 206.5 182 69.8
THA.LOC104800662 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 5.2e-51 205.7 177 68.9
Actinidia34405 Actinidia chinensis HOM05D004676 ORTHO05D005661 6.8e-51 205.3 170 67.1
Nitab4.5_0003154g0010 Nicotiana tabacum HOM05D004676 ORTHO05D005661 6.8e-51 205.3 177 71.8
Solyc08g005450.3 Solanum lycopersicum HOM05D004676 ORTHO05D005661 6.8e-51 205.3 179 72.1
THA.LOC104826325 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 6.8e-51 205.3 177 70.1
Eucgr.E01882 Eucalyptus grandis HOM05D004676 ORTHO05D005661 8.8e-51 204.9 138 75.4
MD11G1108100 Malus domestica HOM05D004676 ORTHO05D005661 8.8e-51 204.9 136 73.5
PGR119G2251 Punica granatum HOM05D004676 ORTHO05D005661 1.2e-50 204.5 183 71.0
Aqoxy7G03598 Aquilegia oxysepala HOM05D004676 ORTHO05D005661 1.5e-50 204.1 137 76.6
Sopen08g001490 Solanum pennellii HOM05D004676 ORTHO05D005661 1.5e-50 204.1 179 71.5
TAR677G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 2.6e-50 203.4 211 55.0
SHI01165 Sapria himalayana HOM05D004676 ORTHO05D005661 3.4e-50 203.0 170 64.7
DCAR_025381 Daucus carota HOM05D004676 ORTHO05D005661 4.4e-50 202.6 137 75.9
Oeu051436.2 Olea europaea HOM05D004676 ORTHO05D005661 7.5e-50 201.8 180 71.1
Actinidia23939 Actinidia chinensis HOM05D004676 ORTHO05D005661 1.7e-49 200.7 171 68.4
Aa31LG5G7310 Aethionema arabicum HOM05D004676 ORTHO05D005661 2.2e-49 200.3 173 64.2
SGA_v2.0_scaffold47G17549 Striga asiatica HOM05D004676 ORTHO05D005661 3.7e-49 199.5 182 68.1
Ah.04g160390 Amaranthus hybridus HOM05D004676 ORTHO05D005661 4.9e-49 199.1 177 69.5
FAN16G2805 Fragaria x ananassa HOM05D004676 ORTHO05D005661 6.3e-49 198.7 176 67.0
FAN25G1996 Fragaria x ananassa HOM05D004676 ORTHO05D005661 6.3e-49 198.7 180 66.1
AT2G28910 Arabidopsis thaliana HOM05D004676 ORTHO05D005661 8.3e-49 198.4 175 65.7
FAN11G0391 Fragaria x ananassa HOM05D004676 ORTHO05D005661 1.1e-48 198.0 176 67.0
Hund18907 Selenicereus undatus HOM05D004676 ORTHO05D005661 1.1e-48 198.0 182 67.0
DCAR_024536 Daucus carota HOM05D004676 ORTHO05D005661 1.4e-48 197.6 128 77.3
AL4G23440 Arabidopsis lyrata HOM05D004676 ORTHO05D005661 3.1e-48 196.4 170 70.0
Migut.L00671 Erythranthe guttata HOM05D004676 ORTHO05D005661 3.1e-48 196.4 184 65.8
TWI75G1679 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 3.1e-48 196.4 140 72.9
Glyma.10G284600 Glycine max HOM05D004676 ORTHO05D005661 5.4e-48 195.7 214 57.5
Phvul.007G016200 Phaseolus vulgaris HOM05D004676 ORTHO05D005661 5.4e-48 195.7 176 65.3
MBI14_g16284_MAGBIO Magnolia biondii HOM05D004676 ORTHO05D005661 7.0e-48 195.3 177 66.1
EL10Ac4g09397 Beta vulgaris HOM05D004676 ORTHO05D005661 1.2e-47 194.5 181 65.2
Migut.D02100 Erythranthe guttata HOM05D004676 ORTHO05D005661 1.2e-47 194.5 181 64.1
FAN21G2159 Fragaria x ananassa HOM05D004676 ORTHO05D005661 1.2e-47 194.5 178 67.4
Sp4g11720 Schrenkiella parvula HOM05D004676 ORTHO05D005661 1.2e-47 194.5 173 68.2
FvH4_3g36111 Fragaria vesca HOM05D004676 ORTHO05D005661 1.6e-47 194.1 176 66.5
CARHR122080 Cardamine hirsuta HOM05D004676 ORTHO05D005661 2.0e-47 193.7 171 69.0
Glyma.20G104700 Glycine max HOM05D004676 ORTHO05D005661 2.7e-47 193.4 177 62.1
AUR62000799 Chenopodium quinoa HOM05D004676 ORTHO05D005661 3.5e-47 193.0 176 68.2
PSO339G5531 Papaver somniferum HOM05D004676 ORTHO05D005661 3.5e-47 193.0 179 63.1
Sed0011846 Sechium edule HOM05D004676 ORTHO05D005661 3.5e-47 193.0 179 69.3
PSO151G0082 Papaver somniferum HOM05D004676 ORTHO05D005661 4.5e-47 192.6 179 63.1
CANSAT21G2535 Cannabis sativa HOM05D004676 ORTHO05D005661 7.7e-47 191.8 181 66.3
AUR62005169 Chenopodium quinoa HOM05D004676 ORTHO05D005661 7.7e-47 191.8 176 67.6
Migut.L00698 Erythranthe guttata HOM05D004676 ORTHO05D005661 7.7e-47 191.8 185 65.4
Carub.0004s0990 Capsella rubella HOM05D004676 ORTHO05D005661 1.0e-46 191.4 170 64.7
BcaC02g11024 Brassica carinata HOM05D004676 ORTHO05D005661 1.7e-46 190.7 171 66.1
C04p22070 Brassica napus HOM05D004676 ORTHO05D005661 1.7e-46 190.7 171 66.1
BolC4t23730H Brassica oleracea HOM05D004676 ORTHO05D005661 1.7e-46 190.7 171 66.1
A07p19390 Brassica napus HOM05D004676 ORTHO05D005661 5.0e-46 189.1 171 68.4
Cc01_g12890 Coffea canephora HOM05D004676 ORTHO05D005661 6.6e-46 188.7 189 63.5
TWI79G0464 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 8.6e-46 188.3 140 70.7
Psat0s2898g0040 Pisum sativum HOM05D004676 ORTHO05D005661 1.1e-45 188.0 178 64.0
CDE04G1893 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 3.3e-45 186.4 174 63.8
VMungo0720G1898 Vigna mungo HOM05D004676 ORTHO05D005661 5.6e-45 185.7 176 63.1
ATR0733G034 Amborella trichopoda HOM05D004676 ORTHO05D005661 7.3e-45 185.3 133 70.7
Ca_11220_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 1.6e-44 184.1 177 62.1
TPR.G18864 Trifolium pratense HOM05D004676 ORTHO05D005661 2.1e-44 183.7 179 62.0
Eucgr.J02052 Eucalyptus grandis HOM05D004676 ORTHO05D005661 3.6e-44 183.0 139 65.5
BolC4t27336H Brassica oleracea HOM05D004676 ORTHO05D005661 4.7e-44 182.6 169 63.9
CDE07G0255 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 4.7e-44 182.6 173 63.0
RcHm_v2.0_Chr5g0064551 Rosa chinensis HOM05D004676 ORTHO05D005661 6.1e-44 182.2 174 62.1
A04p05090 Brassica napus HOM05D004676 ORTHO05D005661 1.2e-42 177.9 169 65.7
A04p21940 Brassica napus HOM05D004676 ORTHO05D005661 1.2e-42 177.9 169 65.7
BraA04t17761Z Brassica rapa HOM05D004676 ORTHO05D005661 1.2e-42 177.9 169 65.7
TAR383G0008 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.2e-42 177.9 111 76.6
TAR455G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.2e-42 177.9 111 76.6
Ca_09918_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 3.4e-42 176.4 137 65.7
Lalb_Chr02g0143571 Lupinus albus HOM05D004676 ORTHO05D005661 3.4e-42 176.4 173 57.2
BcaB02g10212 Brassica carinata HOM05D004676 ORTHO05D005661 4.4e-42 176.0 175 67.4
SEGI_40255 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 4.4e-42 176.0 178 53.9
arahy.Tifrunner.gnm1.ann1.ID2MIU Arachis hypogaea HOM05D004676 ORTHO05D005661 1.7e-41 174.1 181 59.7
Lj5g0019317 Lotus japonicus HOM05D004676 ORTHO05D005661 3.7e-41 172.9 182 56.0
Lalb_Chr06g0163861 Lupinus albus HOM05D004676 ORTHO05D005661 6.4e-41 172.2 173 53.8
HPP92_003389 Vanilla planifolia HOM05D004676 ORTHO05D005661 1.1e-40 171.4 173 62.4
BraA07t29644Z Brassica rapa HOM05D004676 ORTHO05D005661 3.2e-40 169.9 161 65.2
RcHm_v2.0_Chr5g0064841 Rosa chinensis HOM05D004676 ORTHO05D005661 3.2e-40 169.9 129 66.7
COL.COLO4_18509 Corchorus olitorius HOM05D004676 ORTHO05D005661 1.0e-38 164.9 136 60.3
ECA233G0785 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.7e-38 164.1 174 59.8
Pp3c8_12040 Physcomitrium patens HOM05D004676 ORTHO05D005661 3.0e-38 163.3 182 53.3
AagrBONN_evm.TU.Sc2ySwM_228.4612 Anthoceros agrestis HOM05D004676 ORTHO05D005661 5.6e-37 159.1 178 55.1
BcaC02g08125 Brassica carinata HOM05D004676 ORTHO05D005661 9.5e-37 158.3 121 66.9
Os09g0103700 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 1.6e-36 157.5 161 54.0
ECA233G0017 Erigeron canadensis HOM05D004676 ORTHO05D005661 3.6e-36 156.4 174 59.2
FvH4_3g36120 Fragaria vesca HOM05D002246 ORTHO05D002308 6.2e-36 155.6 176 56.2
FAN11G1736 Fragaria x ananassa HOM05D002246 ORTHO05D002308 1.8e-35 154.1 131 61.1
Mapoly0006s0051 Marchantia polymorpha HOM05D004676 ORTHO05D005661 4.4e-34 149.4 173 54.3
Zm00001eb095710 Zea mays HOM05D004676 ORTHO05D005661 2.2e-33 147.1 144 58.3
Zm00001eb307410 Zea mays HOM05D004676 ORTHO05D005661 2.9e-33 146.7 131 59.5
Os05g0297400 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 3.2e-32 143.3 144 56.9
ECA233G4946 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.3e-30 137.9 174 55.7
SMO117G0168 Selaginella moellendorffii HOM05D004676 ORTHO05D005661 3.0e-30 136.7 128 56.2
ATR0693G379 Amborella trichopoda HOM05D004676 ORTHO05D005661 7.3e-29 132.1 133 55.6
C04p58100 Brassica napus HOM05D004676 ORTHO05D005661 8.9e-27 125.2 97 68.0
RcHm_v2.0_Chr5g0064811 Rosa chinensis HOM05D004676 ORTHO05D005661 1.9e-24 117.5 174 48.9
CBR_g53496 Chara braunii HOM05D004676 ORTHO05D137281 5.4e-24 115.9 93 63.4
Eucgr.E01961 Eucalyptus grandis HOM05D004676 ORTHO05D005661 7.1e-24 115.5 92 65.2
TAR625G0807 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.3e-22 111.3 172 48.8
BraA07t30700Z Brassica rapa HOM05D004676 ORTHO05D005661 1.7e-22 110.9 91 63.7
MD11G1107700 Malus domestica HOM05D004676 ORTHO05D005661 1.5e-21 107.8 72 73.6
HPP92_003385 Vanilla planifolia HOM05D004676 ORTHO05D005661 4.3e-21 106.3 111 64.0
ECA247G4102 Erigeron canadensis HOM05D004676 ORTHO05D005661 7.6e-18 95.5 173 41.0
Dinv42954 Davidia involucrata HOM05D004736 ORTHO05D006424 1.9e-16 90.9 49 85.7
Dinv43146 Davidia involucrata HOM05D004736 ORTHO05D006424 1.9e-16 90.9 49 85.7
ECA233G2734 Erigeron canadensis HOM05D004676 ORTHO05D005661 7.3e-13 79.0 45 82.2
SEGI_06382 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 6.0e-07 59.3 82 42.7


User provided reference genes

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