Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.5e-182 642.9 364 100.0
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 1.8e-103 380.2 317 70.3
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 4.0e-103 379.0 325 68.6
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 9.0e-95 351.3 233 82.8
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.7e-93 347.1 323 62.2
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 1.6e-91 340.5 265 70.2
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 3.5e-91 339.3 219 81.7
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 1.0e-90 337.8 276 68.5
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 1.3e-90 337.4 340 60.9
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 6.7e-90 335.1 227 78.0
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 8.7e-90 334.7 278 68.0
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 5.7e-89 332.0 219 80.8
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 7.4e-89 331.6 219 79.9
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 7.4e-89 331.6 219 79.0
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 7.4e-89 331.6 219 79.0
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 3.7e-88 329.3 221 77.8
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 4.8e-88 328.9 219 79.0
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 6.2e-88 328.6 232 75.4
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 6.2e-88 328.6 222 77.9
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 8.2e-88 328.2 327 59.0
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 8.2e-88 328.2 328 60.1
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 8.2e-88 328.2 221 77.4
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 1.1e-87 327.8 265 70.6
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 1.4e-87 327.4 222 77.5
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 1.4e-87 327.4 222 77.9
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 1.8e-87 327.0 245 72.7
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 2.4e-87 326.6 218 79.4
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 2.4e-87 326.6 237 75.5
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 2.4e-87 326.6 222 77.9
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 2.4e-87 326.6 222 77.9
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 3.1e-87 326.2 222 77.5
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 4.0e-87 325.9 320 60.0
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 5.3e-87 325.5 219 79.5
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 6.9e-87 325.1 245 71.8
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 9.0e-87 324.7 219 77.2
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 1.2e-86 324.3 347 57.6
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.0e-86 323.6 305 62.0
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 2.6e-86 323.2 222 76.1
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 3.4e-86 322.8 221 78.3
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 4.5e-86 322.4 213 80.3
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 4.5e-86 322.4 219 76.7
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 4.5e-86 322.4 219 77.6
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 5.8e-86 322.0 331 58.9
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 5.8e-86 322.0 224 76.3
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 7.6e-86 321.6 217 78.8
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 7.6e-86 321.6 222 75.7
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 1.0e-85 321.2 216 79.6
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.0e-85 321.2 224 76.3
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 1.3e-85 320.9 213 79.3
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 1.3e-85 320.9 219 77.6
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.3e-85 320.9 217 78.3
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 1.3e-85 320.9 334 59.6
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 1.7e-85 320.5 219 76.7
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.7e-85 320.5 321 58.3
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 1.1e-84 317.8 270 67.0
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 1.1e-84 317.8 219 76.3
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 1.9e-84 317.0 218 78.0
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 1.9e-84 317.0 221 74.7
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.5e-84 316.6 219 77.6
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 3.2e-84 316.2 229 71.6
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 4.2e-84 315.8 219 77.6
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 5.5e-84 315.5 222 75.2
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 5.5e-84 315.5 319 59.9
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 7.1e-84 315.1 218 77.5
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 9.3e-84 314.7 217 76.5
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.2e-83 314.3 219 77.2
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.2e-83 314.3 219 77.2
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 2.7e-83 313.2 219 76.7
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.7e-83 313.2 244 70.1
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 3.5e-83 312.8 252 68.7
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 3.5e-83 312.8 252 68.7
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 6.1e-83 312.0 247 69.2
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 6.1e-83 312.0 247 69.2
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 7.9e-83 311.6 258 66.7
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 7.9e-83 311.6 225 73.8
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 1.3e-82 310.8 220 75.9
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 2.3e-82 310.1 220 76.4
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 2.3e-82 310.1 216 75.9
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 3.0e-82 309.7 221 75.6
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 3.0e-82 309.7 220 74.5
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 3.9e-82 309.3 220 75.9
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 6.7e-82 308.5 324 57.7
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 8.7e-82 308.1 253 68.8
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 8.7e-82 308.1 253 68.4
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.1e-81 307.8 218 76.1
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 1.1e-81 307.8 218 76.6
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 1.5e-81 307.4 243 68.7
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 1.5e-81 307.4 332 57.2
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 1.5e-81 307.4 220 75.9
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 1.9e-81 307.0 221 75.6
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 1.9e-81 307.0 221 76.0
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 1.9e-81 307.0 236 72.0
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 1.9e-81 307.0 232 71.1
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 1.9e-81 307.0 220 74.5
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 2.5e-81 306.6 218 74.8
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 3.3e-81 306.2 250 68.4
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 3.3e-81 306.2 222 74.3
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 7.4e-81 305.1 216 74.5
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.2e-80 303.5 216 74.1
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 2.8e-80 303.1 221 73.3
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 2.8e-80 303.1 225 73.8
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.7e-80 302.8 238 68.9
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 4.8e-80 302.4 225 73.3
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 6.3e-80 302.0 220 74.1
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 8.2e-80 301.6 242 69.8
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 8.2e-80 301.6 222 73.4
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 1.1e-79 301.2 217 75.1
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 2.4e-79 300.1 216 73.6
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 6.9e-79 298.5 220 74.1
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 2.6e-78 296.6 216 73.6
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 1.3e-77 294.3 284 60.6
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 4.2e-76 289.3 219 71.2
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 6.1e-75 285.4 218 71.1
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.4e-74 284.3 263 62.0
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.8e-74 283.9 241 63.1
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 1.5e-73 280.8 225 64.4
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.5e-73 280.0 251 63.3
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 9.7e-73 278.1 318 52.5
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 1.3e-72 277.7 247 64.0
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 2.2e-72 276.9 220 67.7
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 4.8e-72 275.8 177 79.7
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 8.2e-72 275.0 216 67.6
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 1.4e-71 274.2 221 69.2
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 8.5e-69 265.0 177 78.5
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 8.8e-66 255.0 169 78.1
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 9.7e-65 251.5 190 71.6
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.8e-63 247.3 223 63.2
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 7.0e-63 245.4 166 77.1
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 8.5e-61 238.4 317 46.7
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 3.6e-59 233.0 195 69.7
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 8.0e-59 231.9 206 66.0
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.0e-57 227.3 190 67.4
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.8e-56 223.4 173 69.9
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 1.8e-55 220.7 152 77.6
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 2.4e-55 220.3 193 65.8
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 3.1e-55 219.9 176 70.5
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.2e-54 218.0 224 55.4
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.2e-54 218.0 224 55.4
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 1.2e-51 208.0 185 60.0
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.1e-51 207.2 215 57.2
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.6e-51 206.5 152 75.7
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 1.4e-50 204.5 180 60.6
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 1.4e-50 204.5 182 59.3
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 2.8e-48 196.8 182 58.2
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 5.4e-47 192.6 162 67.9
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 2.2e-45 187.2 346 40.2
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 1.4e-42 177.9 159 62.3
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 4.7e-27 126.3 242 35.1
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 6.1e-27 125.9 225 40.4
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 8.3e-24 115.5 68 80.9
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 5.6e-20 102.8 208 36.5
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 2.2e-16 90.9 198 34.3
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 3.5e-14 83.6 234 30.3
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 4.3e-12 76.6 262 29.0
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 3.6e-11 73.6 42 78.6
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 8.9e-10 68.9 46 76.1
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 5.8e-09 66.2 42 73.8
Nitab4.5_0000780g0100 Nicotiana tabacum HOM05D004368 ORTHO05D004990 9.9e-09 65.5 157 36.3
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 1.3e-08 65.1 51 68.6


User provided reference genes

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