Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 1.5e-95 352.8 175 100.0
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 5.0e-75 284.6 175 77.1
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 4.4e-71 271.6 172 77.3
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 3.2e-66 255.4 175 72.0
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 5.9e-52 208.0 174 59.2
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 1.0e-51 207.2 182 59.3
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 1.7e-51 206.5 173 61.3
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 6.5e-51 204.5 172 58.7
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 4.7e-49 198.4 183 56.8
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 1.4e-48 196.8 181 56.9
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 4.0e-48 195.3 181 56.4
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 2.0e-47 193.0 184 53.8
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 2.6e-47 192.6 184 56.0
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 7.5e-47 191.0 178 56.2
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 7.5e-47 191.0 166 61.4
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 1.7e-46 189.9 179 54.7
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 1.7e-46 189.9 170 58.8
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 2.8e-46 189.1 185 56.2
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 3.1e-45 185.7 172 55.8
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 3.1e-45 185.7 182 54.4
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 4.1e-45 185.3 178 56.2
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 4.1e-45 185.3 181 59.7
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 5.4e-45 184.9 181 54.1
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 1.2e-44 183.7 170 54.7
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 1.2e-44 183.7 183 51.9
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 2.0e-44 183.0 184 52.2
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 2.7e-44 182.6 172 57.6
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 3.5e-44 182.2 177 53.7
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 3.5e-44 182.2 183 53.6
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 5.9e-44 181.4 183 51.9
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 5.9e-44 181.4 174 51.7
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 7.7e-44 181.0 170 54.1
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 1.7e-43 179.9 174 51.1
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 1.7e-43 179.9 174 51.1
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 2.3e-43 179.5 177 53.7
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 2.3e-43 179.5 177 53.7
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 2.3e-43 179.5 179 54.2
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 3.8e-43 178.7 177 53.7
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 5.0e-43 178.3 185 53.5
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 6.6e-43 177.9 177 53.7
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 1.1e-42 177.2 174 51.7
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 1.2e-41 173.7 173 52.0
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 1.6e-41 173.3 171 51.5
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 2.1e-41 172.9 185 51.9
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 3.6e-41 172.2 186 51.1
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 4.7e-41 171.8 173 52.0
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 6.1e-41 171.4 174 51.1
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 8.0e-41 171.0 178 50.6
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 1.0e-40 170.6 172 51.2
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 1.4e-40 170.2 183 51.9
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 1.8e-40 169.9 181 49.7
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 1.8e-40 169.9 174 51.7
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 3.0e-40 169.1 183 50.3
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 5.2e-40 168.3 177 49.7
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 5.2e-40 168.3 173 49.7
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 1.2e-39 167.2 176 52.3
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 1.5e-39 166.8 185 53.0
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 2.0e-39 166.4 181 51.4
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 2.0e-39 166.4 182 48.9
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 2.0e-39 166.4 168 51.8
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 2.6e-39 166.0 175 52.0
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 7.5e-39 164.5 172 47.7
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 7.5e-39 164.5 188 51.1
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 9.8e-39 164.1 173 48.6
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 1.3e-38 163.7 171 49.1
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 2.2e-38 162.9 172 50.0
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 2.2e-38 162.9 171 50.9
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 2.9e-38 162.5 186 48.4
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 3.7e-38 162.2 182 48.4
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 3.7e-38 162.2 185 48.6
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 4.9e-38 161.8 178 47.2
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 4.9e-38 161.8 172 48.8
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 8.3e-38 161.0 178 51.1
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 8.3e-38 161.0 195 44.1
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 8.3e-38 161.0 183 49.2
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 1.4e-37 160.2 175 49.1
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 4.1e-37 158.7 174 50.0
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 7.0e-37 157.9 172 49.4
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 7.0e-37 157.9 185 48.1
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 1.2e-36 157.1 179 46.9
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 3.5e-36 155.6 169 48.5
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 3.5e-36 155.6 173 47.4
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 4.6e-36 155.2 178 48.3
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 2.3e-35 152.9 182 46.7
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 2.3e-35 152.9 175 46.9
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 1.1e-34 150.6 181 44.8
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 2.5e-34 149.4 174 47.1
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 2.5e-34 149.4 172 44.8
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 2.8e-33 146.0 181 44.2
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 6.2e-33 144.8 167 44.9
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 5.8e-31 138.3 178 44.4
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 7.5e-31 137.9 179 45.3
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 9.8e-31 137.5 179 45.3
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 2.9e-30 136.0 188 43.6
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 3.7e-30 135.6 178 44.9
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 3.7e-30 135.6 154 47.4
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 3.7e-30 135.6 182 40.1
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 4.9e-30 135.2 179 45.3
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 8.3e-30 134.4 186 43.5
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 1.4e-29 133.7 179 44.1
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 1.9e-29 133.3 179 43.6
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 2.4e-29 132.9 185 40.5
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 2.4e-29 132.9 154 46.8
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 5.4e-29 131.7 174 40.8
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 9.2e-29 131.0 177 42.9
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 9.2e-29 131.0 177 42.9
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 1.6e-28 130.2 178 43.3
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 4.6e-28 128.6 181 44.8
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 2.3e-27 126.3 177 41.8
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 3.0e-27 125.9 186 39.2
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 3.9e-27 125.6 175 45.1
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 8.6e-27 124.4 176 43.8
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 1.1e-26 124.0 180 41.7
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 1.5e-26 123.6 126 54.0
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 2.5e-26 122.9 178 39.9
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 3.3e-26 122.5 113 54.9
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 5.6e-26 121.7 127 51.2
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 2.1e-25 119.8 184 40.2
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 8.1e-25 117.9 183 39.3
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 2.3e-24 116.3 184 39.7
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 3.1e-24 115.9 183 38.3
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 6.8e-24 114.8 144 44.4
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 8.9e-24 114.4 183 39.3
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 8.9e-24 114.4 183 39.3
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 1.5e-23 113.6 177 40.7
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 2.0e-23 113.2 183 37.7
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 4.4e-23 112.1 182 37.9
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 2.2e-22 109.8 183 37.2
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 6.4e-22 108.2 183 36.1
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 8.3e-22 107.8 183 37.7
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 3.2e-21 105.9 184 37.5
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 2.1e-20 103.2 185 36.2
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 2.1e-20 103.2 116 46.6
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 1.0e-19 100.9 120 48.3
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 7.3e-18 94.7 202 33.2
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 2.1e-17 93.2 92 57.6
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 2.1e-17 93.2 158 36.1
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 6.2e-17 91.7 96 51.0
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 4.4e-15 85.5 182 34.1
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 1.7e-14 83.6 182 34.6
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 1.4e-13 80.5 88 47.7
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 3.2e-13 79.3 176 34.1
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 6.6e-11 71.6 59 54.2
Zm00001eb242880 Zea mays HOM05D005110 ORTHO05D006074 4.4e-07 58.9 210 29.0


User provided reference genes

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