Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G3501 Erigeron canadensis HOM05D002567 ORTHO05D007435 1.8e-268 928.7 478 100.0
HanXRQChr01g0001661 Helianthus annuus HOM05D002567 ORTHO05D007435 2.1e-176 622.9 408 81.4
Lsat_1_v5_gn_5_189341 Lactuca sativa HOM05D002567 ORTHO05D007435 5.2e-159 565.1 399 74.9
Cc01_g20520 Coffea canephora HOM05D002567 ORTHO05D007435 1.6e-152 543.5 427 67.4
Rhsim01G0282400 Rhododendron simsii HOM05D002567 ORTHO05D007435 1.5e-150 537.0 416 67.5
Actinidia24843 Actinidia chinensis HOM05D002567 ORTHO05D007435 2.6e-150 536.2 413 65.6
CSS0018114 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 2.6e-150 536.2 415 66.3
CSS0004593 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 9.8e-150 534.3 412 66.5
TWI14G0999 Tripterygium wilfordii HOM05D002567 ORTHO05D007435 4.9e-149 531.9 411 66.2
PGSC0003DMG402011364 Solanum tuberosum HOM05D002567 ORTHO05D007435 5.4e-148 528.5 416 65.1
Sed0025005 Sechium edule HOM05D002567 ORTHO05D007435 7.1e-148 528.1 419 66.1
Migut.D00184 Erythranthe guttata HOM05D002567 ORTHO05D007435 4.6e-147 525.4 415 64.3
Sopen09g029600 Solanum pennellii HOM05D002567 ORTHO05D007435 1.0e-146 524.2 427 63.7
MD03G1284200 Malus domestica HOM05D002567 ORTHO05D007435 1.3e-146 523.9 402 66.2
SalBow3G3633 Salvia bowleyana HOM05D002567 ORTHO05D007435 1.7e-146 523.5 414 64.5
Cpa.g.sc9.190 Carica papaya HOM05D002567 ORTHO05D007435 2.3e-146 523.1 414 65.5
Cfa005987 Carpinus fangiana HOM05D002567 ORTHO05D007435 2.3e-146 523.1 408 65.7
RcHm_v2.0_Chr6g0293181 Rosa chinensis HOM05D002567 ORTHO05D007435 3.0e-146 522.7 406 65.0
Hund05401 Selenicereus undatus HOM05D002567 ORTHO05D007435 3.9e-146 522.3 420 64.8
TAR365G0282 Trochodendron aralioides HOM05D002567 ORTHO05D007435 5.1e-146 521.9 414 64.3
GSVIVG01010968001 Vitis vinifera HOM05D002567 ORTHO05D007435 5.1e-146 521.9 412 65.5
Lj2C1189T5 Lonicera japonica HOM05D002567 ORTHO05D007435 6.6e-146 521.5 437 63.8
Ciclev10019856m.g Citrus clementina HOM05D002567 ORTHO05D007435 8.6e-146 521.2 409 66.3
vmacro14988 Vaccinium macrocarpon HOM05D002567 ORTHO05D007435 5.6e-145 518.5 415 64.3
Oeu046707.1 Olea europaea HOM05D002567 ORTHO05D007435 1.2e-144 517.3 415 65.1
Prupe.8G255700 Prunus persica HOM05D002567 ORTHO05D007435 3.6e-144 515.8 407 65.4
Eucgr.K03452 Eucalyptus grandis HOM05D002567 ORTHO05D007435 8.1e-144 514.6 427 62.8
QL12p030562 Quercus lobata HOM05D002567 ORTHO05D007435 1.1e-143 514.2 408 64.2
CiPaw.07G103700 Carya illinoinensis HOM05D002567 ORTHO05D007435 1.8e-143 513.5 406 64.8
Manes.05G065800 Manihot esculenta HOM05D002567 ORTHO05D007435 3.1e-143 512.7 407 64.9
FvH4_c6g00110 Fragaria vesca HOM05D002567 ORTHO05D007435 1.2e-142 510.8 395 65.8
Thecc.01G294000 Theobroma cacao HOM05D002567 ORTHO05D007435 2.0e-142 510.0 406 64.5
CANSAT25G3369 Cannabis sativa HOM05D002567 ORTHO05D007435 3.4e-142 509.2 396 64.4
ClCG09G006190 Citrullus lanatus HOM05D002567 ORTHO05D007435 3.4e-142 509.2 423 63.6
SGA_v2.0_scaffold1G00388 Striga asiatica HOM05D002567 ORTHO05D007435 4.4e-142 508.8 407 64.4
Sc05g0004310 Simmondsia chinensis HOM05D002567 ORTHO05D007435 5.8e-142 508.4 409 63.6
FvH4_c6g00080 Fragaria vesca HOM05D002567 ORTHO05D007435 9.9e-142 507.7 401 64.6
THA.LOC104817512 Tarenaya hassleriana HOM05D002567 ORTHO05D007435 2.2e-141 506.5 404 64.1
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 2.9e-141 506.1 413 64.6
PGR044G2614 Punica granatum HOM05D002567 ORTHO05D007435 6.4e-141 505.0 412 64.1
Gohir.D08G083800 Gossypium hirsutum HOM05D002567 ORTHO05D007435 8.4e-141 504.6 404 64.1
Aa31LG1G29180 Aethionema arabicum HOM05D002567 ORTHO05D007435 2.4e-140 503.1 403 64.3
PSO832G0331 Papaver somniferum HOM05D002567 ORTHO05D007435 3.2e-140 502.7 415 61.7
Gohir.A08G074500 Gossypium hirsutum HOM05D002567 ORTHO05D007435 4.1e-140 502.3 406 64.0
Phvul.007G165166 Phaseolus vulgaris HOM05D002567 ORTHO05D007435 4.1e-140 502.3 413 62.5
FAN20G2691 Fragaria x ananassa HOM05D002567 ORTHO05D007435 1.6e-139 500.4 419 62.1
FAN24G0883 Fragaria x ananassa HOM05D002567 ORTHO05D007435 2.1e-139 500.0 419 62.1
ATR0706G146 Amborella trichopoda HOM05D002567 ORTHO05D007435 2.7e-139 499.6 433 61.9
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 2.7e-139 499.6 446 59.2
Aqoxy5G00699 Aquilegia oxysepala HOM05D002567 ORTHO05D007435 3.5e-139 499.2 406 62.1
Glyma.10G020300 Glycine max HOM05D002567 ORTHO05D007435 3.5e-139 499.2 406 64.3
Glyma.02G153800 Glycine max HOM05D002567 ORTHO05D007435 2.3e-138 496.5 407 63.4
Medtr1g088870 Medicago truncatula HOM05D002567 ORTHO05D007435 5.1e-138 495.4 403 63.8
Ca_10357_v3 Cicer arietinum L. HOM05D002567 ORTHO05D007435 1.1e-137 494.2 409 63.3
Lalb_Chr06g0163361 Lupinus albus HOM05D002567 ORTHO05D007435 1.6e-136 490.3 405 62.7
Nn5g30061 Nelumbo nucifera HOM05D002567 ORTHO05D007435 1.6e-136 490.3 423 60.8
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 4.7e-136 488.8 393 64.4
Gorai.004G088200 Gossypium raimondii HOM05D002567 ORTHO05D007435 4.7e-136 488.8 430 60.2
BcaB01g03155 Brassica carinata HOM05D002567 ORTHO05D007435 1.1e-135 487.6 402 62.9
Lj5g0023248 Lotus japonicus HOM05D002567 ORTHO05D007435 1.4e-135 487.3 401 63.1
TPR.G33972 Trifolium pratense HOM05D002567 ORTHO05D007435 1.4e-135 487.3 409 62.1
VMungo0720G1827 Vigna mungo HOM05D002567 ORTHO05D007435 1.4e-135 487.3 414 60.9
DCAR_012404 Daucus carota HOM05D002567 ORTHO05D007435 5.2e-135 485.3 415 62.7
FAN15G3695 Fragaria x ananassa HOM05D002567 ORTHO05D007435 1.5e-134 483.8 456 57.2
Thhalv10001431m.g Eutrema salsugineum HOM05D002567 ORTHO05D007435 3.4e-134 482.6 403 62.3
A03p26080 Brassica napus HOM05D002567 ORTHO05D007435 5.8e-134 481.9 400 63.2
CARHR143220 Cardamine hirsuta HOM05D002567 ORTHO05D007435 5.8e-134 481.9 403 60.8
BraA03t11823Z Brassica rapa HOM05D002567 ORTHO05D007435 9.9e-134 481.1 400 63.2
C03p31100 Brassica napus HOM05D002567 ORTHO05D007435 1.7e-133 480.3 406 62.8
BolC3t15458H Brassica oleracea HOM05D002567 ORTHO05D007435 8.4e-133 478.0 400 62.5
BcaC01g05016 Brassica carinata HOM05D002567 ORTHO05D007435 1.1e-132 477.6 400 62.8
Sp4g29760 Schrenkiella parvula HOM05D002567 ORTHO05D007435 2.4e-132 476.5 401 61.8
AL4G47410 Arabidopsis lyrata HOM05D002567 ORTHO05D007435 9.3e-132 474.6 400 62.2
CAN.G1562.6 Capsicum annuum HOM05D002567 ORTHO05D007435 1.6e-131 473.8 428 59.8
AT2G47830 Arabidopsis thaliana HOM05D002567 ORTHO05D007435 1.3e-130 470.7 397 62.7
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 1.3e-130 470.7 405 61.0
Os03g0346800 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D007435 6.6e-130 468.4 406 59.6
AUR62043263 Chenopodium quinoa HOM05D002567 ORTHO05D007435 5.6e-129 465.3 407 60.0
AUR62033190 Chenopodium quinoa HOM05D002567 ORTHO05D007435 1.6e-128 463.8 408 60.0
Duzib133G1128 Durio zibethinus HOM05D002567 ORTHO05D007435 3.1e-127 459.5 402 60.4
Dinv19731 Davidia involucrata HOM05D002567 ORTHO05D007435 3.1e-119 433.0 343 64.4
Ah.15g093860 Amaranthus hybridus HOM05D002567 ORTHO05D007435 2.6e-118 429.9 405 57.3
Psat6g167000 Pisum sativum HOM05D002567 ORTHO05D007435 8.7e-114 414.8 276 74.6
Hma1.2p1_0399F.1_g143930 Hydrangea macrophylla HOM05D002567 ORTHO05D007435 7.6e-110 401.7 378 56.6
MELO3C016044.2 Cucumis melo HOM05D002567 ORTHO05D007435 1.5e-105 387.5 405 56.3
Mapoly0007s0103 Marchantia polymorpha HOM05D002567 ORTHO05D007435 1.5e-102 377.5 311 58.8
HPP92_011840 Vanilla planifolia HOM05D002567 ORTHO05D007435 2.0e-102 377.1 269 67.7
SMO145G0291 Selaginella moellendorffii HOM05D002567 ORTHO05D007435 6.7e-98 362.1 308 59.7
CsaV3_7G028940 Cucumis sativus L. HOM05D002567 ORTHO05D007435 9.7e-97 358.2 308 61.4
Pp3c14_1830 Physcomitrium patens HOM05D002567 ORTHO05D007435 2.6e-94 350.1 332 55.7
Pp3c10_1060 Physcomitrium patens HOM05D002567 ORTHO05D007435 7.7e-94 348.6 452 44.5
Sed0015917 Sechium edule HOM05D002567 ORTHO05D007435 4.2e-92 342.8 315 58.4
Carub.0004s3055 Capsella rubella HOM05D002567 ORTHO05D007435 3.9e-90 336.3 319 57.4
Potri.002G209023 Populus trichocarpa HOM05D002567 ORTHO05D007435 2.6e-86 323.6 278 59.7
AUR62033191 Chenopodium quinoa HOM05D002567 ORTHO05D007435 2.4e-79 300.4 250 62.0
Solyc09g074740.2 Solanum lycopersicum HOM05D002567 ORTHO05D007435 1.6e-78 297.7 193 76.2
Peaxi162Scf00067g01814 Petunia axillaris HOM05D002567 ORTHO05D007435 5.9e-78 295.8 221 69.7
Atru.chr5.1231 Acer truncatum HOM05D002567 ORTHO05D007435 1.5e-76 291.2 188 74.5
Zm00001eb016640 Zea mays HOM05D002567 ORTHO05D007435 1.6e-75 287.7 267 55.1
FAN19G1365 Fragaria x ananassa HOM05D002567 ORTHO05D007435 9.7e-73 278.5 184 74.5
CDE02G2579 Ceratophyllum demersum HOM05D002567 ORTHO05D007435 6.5e-69 265.8 278 51.1
Solyc09g074750.3 Solanum lycopersicum HOM05D002567 ORTHO05D007435 4.7e-59 233.0 244 52.0
Peaxi162Scf00067g01819 Petunia axillaris HOM05D002567 ORTHO05D007435 6.3e-56 222.6 218 53.7
Atru.chr5.1230 Acer truncatum HOM05D002567 ORTHO05D007435 2.3e-50 204.1 196 56.6
arahy.Tifrunner.gnm1.ann1.XK0FMC Arachis hypogaea HOM05D002567 ORTHO05D007435 5.2e-34 149.8 335 35.5
Cfa024758 Carpinus fangiana HOM05D002567 ORTHO05D007435 6.0e-30 136.3 318 30.5
CAN.G1349.13 Capsicum annuum HOM05D000586 ORTHO05D007435 6.6e-29 132.9 117 59.0
PRCOL_00000973 Prasinoderma coloniale HOM05D002567 ORTHO05D007435 5.6e-28 129.8 306 28.8
DCAR_017872 Daucus carota HOM05D002567 ORTHO05D007435 7.6e-25 119.4 75 74.7
arahy.Tifrunner.gnm1.ann1.5I5ID6 Arachis hypogaea HOM05D002567 ORTHO05D007435 2.9e-24 117.5 77 71.4
arahy.Tifrunner.gnm1.ann1.L0WASJ Arachis hypogaea HOM05D002567 ORTHO05D007435 2.9e-24 117.5 77 71.4
MCO08G095 Micromonas commoda HOM05D002567 ORTHO05D007435 6.4e-24 116.3 358 27.9
CAN.G312.11 Capsicum annuum HOM05D000586 ORTHO05D003356 2.4e-23 114.4 86 68.6
Ciclev10006598m.g Citrus clementina HOM05D002567 ORTHO05D007435 3.3e-20 104.0 64 82.8
Nitab4.5_0011064g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 7.3e-20 102.8 108 55.6
Actinidia21062 Actinidia chinensis HOM05D002567 ORTHO05D007435 1.2e-17 95.5 67 67.2
CARHR055860 Cardamine hirsuta HOM05D002567 ORTHO05D007435 3.4e-17 94.0 92 54.3
CAN.G2.56 Capsicum annuum HOM05D000586 ORTHO05D003356 2.9e-16 90.9 55 78.2
CARHR220570 Cardamine hirsuta HOM05D002567 ORTHO05D007435 9.3e-15 85.9 92 53.3
Oeu011429.1 Olea europaea HOM05D002567 ORTHO05D007435 2.3e-13 81.3 48 77.1
Nitab4.5_0005578g0030 Nicotiana tabacum HOM05D002567 ORTHO05D007435 1.1e-10 72.4 84 48.8
Duzib133G1109 Durio zibethinus HOM05D002567 ORTHO05D007435 6.9e-10 69.7 85 41.2
Sopen09g029580 Solanum pennellii HOM05D002567 ORTHO05D007435 1.5e-09 68.6 49 67.3
EL10Ac7g17491 Beta vulgaris HOM05D002567 ORTHO05D007435 2.0e-09 68.2 41 75.6
Duzib133G0811 Durio zibethinus HOM05D002567 ORTHO05D007435 1.7e-08 65.1 85 40.0
QL08p057959 Quercus lobata HOM05D000870 ORTHO05D000715 6.4e-08 63.2 322 20.2
GSVIVG01016640001 Vitis vinifera HOM05D000870 ORTHO05D000715 8.4e-08 62.8 322 22.0
Eucgr.G02893 Eucalyptus grandis HOM05D000870 ORTHO05D000715 1.1e-07 62.4 321 21.2
RcHm_v2.0_Chr1g0365671 Rosa chinensis HOM05D000870 ORTHO05D000715 2.4e-07 61.2 321 20.9
Lsat_1_v5_gn_5_86321 Lactuca sativa HOM05D000295 ORTHO05D001778 3.2e-07 60.8 36 83.3
FvH4_7g21220 Fragaria vesca HOM05D000870 ORTHO05D000715 4.2e-07 60.5 321 20.6
FAN03G1595 Fragaria x ananassa HOM05D000870 ORTHO05D000715 4.2e-07 60.5 321 20.6
FAN06G4451 Fragaria x ananassa HOM05D000870 ORTHO05D000715 4.2e-07 60.5 321 20.6
Cfa001540 Carpinus fangiana HOM05D000870 ORTHO05D000715 5.4e-07 60.1 321 20.2
BraA04t18463Z Brassica rapa HOM05D000870 ORTHO05D000715 7.1e-07 59.7 321 22.4
AUR62043266 Chenopodium quinoa HOM05D003402 ORTHO05D003939 7.1e-07 59.7 43 67.4
vmacro07142 Vaccinium macrocarpon HOM05D000870 ORTHO05D000715 1.2e-06 58.9 321 20.9
Aa31LG5G20150 Aethionema arabicum HOM05D000870 ORTHO05D000715 1.6e-06 58.5 321 21.5
Lsat_1_v5_gn_0_19060 Lactuca sativa HOM05D002567 ORTHO05D007435 1.6e-06 58.5 83 44.6
DCAR_015229 Daucus carota HOM05D000870 ORTHO05D000715 2.1e-06 58.2 323 22.3
ECA232G3794 Erigeron canadensis HOM05D000870 ORTHO05D000715 2.1e-06 58.2 337 22.8
HPP92_019816 Vanilla planifolia HOM05D000870 ORTHO05D000715 2.1e-06 58.2 301 21.9
A05p06940 Brassica napus HOM05D000870 ORTHO05D000715 2.7e-06 57.8 321 23.1
TWI15G0914 Tripterygium wilfordii HOM05D000870 ORTHO05D000715 2.7e-06 57.8 299 22.7
BcaB02g09118 Brassica carinata HOM05D000870 ORTHO05D000715 3.5e-06 57.4 321 23.1
CANSAT54G0016 Cannabis sativa HOM05D000870 ORTHO05D000715 3.5e-06 57.4 311 20.9
Oeu025628.1 Olea europaea HOM05D000870 ORTHO05D000715 3.5e-06 57.4 321 19.9
A04p30450 Brassica napus HOM05D000870 ORTHO05D000715 4.6e-06 57.0 321 22.1
Thhalv10016762m.g Eutrema salsugineum HOM05D000870 ORTHO05D000715 4.6e-06 57.0 321 23.1
arahy.Tifrunner.gnm1.ann1.66ANXA Arachis hypogaea HOM05D002567 ORTHO05D007435 6.0e-06 56.6 77 39.0
C04p67350 Brassica napus HOM05D000870 ORTHO05D000715 6.0e-06 56.6 321 22.1
BolC4t28230H Brassica oleracea HOM05D000870 ORTHO05D000715 6.0e-06 56.6 321 22.1
Carub.0004s2152 Capsella rubella HOM05D000870 ORTHO05D000715 6.0e-06 56.6 321 22.1
AUR62042552 Chenopodium quinoa HOM05D004615 ORTHO05D000004 6.0e-06 56.6 132 29.5
Solyc05g054730.3 Solanum lycopersicum HOM05D000870 ORTHO05D000715 6.0e-06 56.6 321 20.2
Sopen05g033200 Solanum pennellii HOM05D000870 ORTHO05D000715 6.0e-06 56.6 321 20.2
BcaB06g29087 Brassica carinata HOM05D000870 ORTHO05D000715 7.9e-06 56.2 321 22.1
HanXRQChr09g0247671 Helianthus annuus HOM05D000870 ORTHO05D000715 7.9e-06 56.2 299 23.7
Os01g0837800 Oryza sativa ssp. japonica HOM05D000870 ORTHO05D000715 7.9e-06 56.2 299 23.4
Zm00001eb148620 Zea mays HOM05D000870 ORTHO05D000715 7.9e-06 56.2 299 23.4


User provided reference genes

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