Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G3457 Erigeron canadensis HOM05D003136 ORTHO05D003562 3.1e-43 177.9 83 100.0
Lsat_1_v5_gn_9_6521 Lactuca sativa HOM05D003136 ORTHO05D003562 1.2e-18 96.3 103 49.5
Rhsim13G0000900 Rhododendron simsii HOM05D003136 ORTHO05D003562 1.7e-17 92.4 97 49.5
Sc17g0000160 Simmondsia chinensis HOM05D003136 ORTHO05D003562 1.1e-16 89.7 101 48.5
HanXRQChr15g0464391 Helianthus annuus HOM05D003136 ORTHO05D003562 1.5e-16 89.4 103 47.6
QL12p034332 Quercus lobata HOM05D003136 ORTHO05D003562 1.9e-16 89.0 103 47.6
Nn3g21882 Nelumbo nucifera HOM05D003136 ORTHO05D003562 2.5e-16 88.6 100 48.0
Ciclev10018861m.g Citrus clementina HOM05D003136 ORTHO05D003562 3.2e-16 88.2 99 48.5
vmacro02370 Vaccinium macrocarpon HOM05D003136 ORTHO05D003562 3.2e-16 88.2 100 48.0
Sabra02G0166100 Salix brachista HOM05D003136 ORTHO05D003562 4.2e-16 87.8 98 49.0
Oeu009105.2 Olea europaea HOM05D003136 ORTHO05D003562 5.5e-16 87.4 100 46.0
CiPaw.08G084600 Carya illinoinensis HOM05D003136 ORTHO05D003562 7.2e-16 87.0 103 46.6
HanXRQChr10g0285601 Helianthus annuus HOM05D003136 ORTHO05D003562 7.2e-16 87.0 100 47.0
Potri.002G189700 Populus trichocarpa HOM05D003136 ORTHO05D003562 7.2e-16 87.0 98 49.0
GSVIVG01028201001 Vitis vinifera HOM05D003136 ORTHO05D003562 7.2e-16 87.0 103 46.6
Sabra14G0085000 Salix brachista HOM05D003136 ORTHO05D003562 1.6e-15 85.9 98 46.9
Potri.014G114900 Populus trichocarpa HOM05D003136 ORTHO05D003562 2.1e-15 85.5 98 46.9
TWI59G0671 Tripterygium wilfordii HOM05D003136 ORTHO05D003562 2.1e-15 85.5 100 47.0
Actinidia21356 Actinidia chinensis HOM05D003136 ORTHO05D003562 2.7e-15 85.1 100 46.0
CiPaw.07G123400 Carya illinoinensis HOM05D003136 ORTHO05D003562 2.7e-15 85.1 100 48.0
Nn4g25407 Nelumbo nucifera HOM05D003136 ORTHO05D003562 2.7e-15 85.1 103 46.6
Thecc.01G322400 Theobroma cacao HOM05D003136 ORTHO05D003562 2.7e-15 85.1 100 46.0
Actinidia06390 Actinidia chinensis HOM05D003136 ORTHO05D003562 3.6e-15 84.7 100 46.0
Sed0004994 Sechium edule HOM05D003136 ORTHO05D003562 3.6e-15 84.7 101 45.5
SGA_v2.0_scaffold80G25692 Striga asiatica HOM05D003136 ORTHO05D003562 4.7e-15 84.3 100 45.0
ClCG09G004660 Citrullus lanatus HOM05D003136 ORTHO05D003562 6.1e-15 84.0 101 45.5
MELO3C023608.2 Cucumis melo HOM05D003136 ORTHO05D003562 6.1e-15 84.0 101 45.5
CsaV3_7G030450 Cucumis sativus L. HOM05D003136 ORTHO05D003562 6.1e-15 84.0 101 45.5
Gohir.D11G111500 Gossypium hirsutum HOM05D003136 ORTHO05D003562 6.1e-15 84.0 103 45.6
Gohir.D12G125100 Gossypium hirsutum HOM05D003136 ORTHO05D003562 6.1e-15 84.0 100 45.0
Gorai.007G119400 Gossypium raimondii HOM05D003136 ORTHO05D003562 6.1e-15 84.0 103 45.6
Gorai.008G136100 Gossypium raimondii HOM05D003136 ORTHO05D003562 6.1e-15 84.0 100 45.0
QL03p009619 Quercus lobata HOM05D003136 ORTHO05D003562 6.1e-15 84.0 100 46.0
CSS0015575 Camellia sinensis var. sinensis HOM05D003136 ORTHO05D003562 8.0e-15 83.6 100 47.0
CSS0033262 Camellia sinensis var. sinensis HOM05D003136 ORTHO05D003562 8.0e-15 83.6 100 47.0
CSS0044264 Camellia sinensis var. sinensis HOM05D003136 ORTHO05D003562 8.0e-15 83.6 100 47.0
PSO210G0090 Papaver somniferum HOM05D003136 ORTHO05D003562 8.0e-15 83.6 100 47.0
PSO761G0237 Papaver somniferum HOM05D003136 ORTHO05D003562 8.0e-15 83.6 100 47.0
Peaxi162Scf00309g00121 Petunia axillaris HOM05D003136 ORTHO05D003562 8.0e-15 83.6 100 46.0
PGR142G2717 Punica granatum HOM05D003136 ORTHO05D003562 8.0e-15 83.6 100 46.0
Manes.05G010800 Manihot esculenta HOM05D003136 ORTHO05D003562 1.0e-14 83.2 103 43.7
Thecc.05G328100 Theobroma cacao HOM05D003136 ORTHO05D003562 1.0e-14 83.2 100 44.0
MSTRG.21725 Avicennia marina HOM05D003136 ORTHO05D003562 1.4e-14 82.8 100 46.0
TAR365G0734 Trochodendron aralioides HOM05D003136 ORTHO05D003562 1.4e-14 82.8 100 45.0
Atru.chr5.904 Acer truncatum HOM05D003136 ORTHO05D003562 1.8e-14 82.4 100 46.0
Cfa004879 Carpinus fangiana HOM05D003136 ORTHO05D003562 1.8e-14 82.4 100 46.0
Duzib138G1355 Durio zibethinus HOM05D003136 ORTHO05D003562 1.8e-14 82.4 100 45.0
Duzib177G0590 Durio zibethinus HOM05D003136 ORTHO05D003562 1.8e-14 82.4 100 45.0
Eucgr.K00591 Eucalyptus grandis HOM05D003136 ORTHO05D003562 1.8e-14 82.4 100 43.0
Glyma.19G220000 Glycine max HOM05D003136 ORTHO05D003562 1.8e-14 82.4 101 45.5
Gohir.A12G121400 Gossypium hirsutum HOM05D003136 ORTHO05D003562 1.8e-14 82.4 100 44.0
Gohir.D11G285600 Gossypium hirsutum HOM05D003136 ORTHO05D003562 1.8e-14 82.4 100 45.0
Gorai.007G308800 Gossypium raimondii HOM05D003136 ORTHO05D003562 1.8e-14 82.4 100 45.0
Sed0000670 Sechium edule HOM05D003136 ORTHO05D003562 1.8e-14 82.4 101 43.6
ECA247G2356 Erigeron canadensis HOM05D003136 ORTHO05D003562 2.3e-14 82.0 100 46.0
Migut.D00028 Erythranthe guttata HOM05D003136 ORTHO05D003562 2.3e-14 82.0 100 46.0
arahy.Tifrunner.gnm1.ann1.3N4E8I Arachis hypogaea HOM05D003136 ORTHO05D003562 3.0e-14 81.6 100 45.0
arahy.Tifrunner.gnm1.ann1.3UY4XW Arachis hypogaea HOM05D003136 ORTHO05D003562 3.0e-14 81.6 100 45.0
Ca_09235_v3 Cicer arietinum L. HOM05D003136 ORTHO05D003562 3.0e-14 81.6 103 43.7
TAR633G0221 Trochodendron aralioides HOM05D003136 ORTHO05D003562 3.0e-14 81.6 100 45.0
Glyma.03G222900 Glycine max HOM05D003136 ORTHO05D003562 4.0e-14 81.3 101 44.6
Duzib133G0059 Durio zibethinus HOM05D003136 ORTHO05D003562 5.2e-14 80.9 100 44.0
THA.LOC104802129 Tarenaya hassleriana HOM05D003136 ORTHO05D003562 5.2e-14 80.9 100 44.0
Haze_05118 Corylus avellana HOM05D003136 ORTHO05D003562 6.8e-14 80.5 100 44.0
FAN14G2912 Fragaria x ananassa HOM05D003136 ORTHO05D003562 6.8e-14 80.5 100 42.0
CSS0040158 Camellia sinensis var. sinensis HOM05D003136 ORTHO05D003562 8.8e-14 80.1 100 44.0
FvH4_6g08350 Fragaria vesca HOM05D003136 ORTHO05D003562 1.2e-13 79.7 100 42.0
MD02G1277600 Malus domestica HOM05D003136 ORTHO05D003562 1.2e-13 79.7 100 42.0
Solyc01g068390.3 Solanum lycopersicum HOM05D003136 ORTHO05D003562 1.2e-13 79.7 100 46.0
Sopen01g030350 Solanum pennellii HOM05D003136 ORTHO05D003562 1.2e-13 79.7 100 46.0
PGSC0003DMG400017959 Solanum tuberosum HOM05D003136 ORTHO05D003562 1.2e-13 79.7 100 46.0
COL.COLO4_05504 Corchorus olitorius HOM05D003136 ORTHO05D003562 1.5e-13 79.3 100 43.0
Prupe.2G042900 Prunus persica HOM05D003136 ORTHO05D003562 1.5e-13 79.3 100 42.0
Gohir.A08G121050 Gossypium hirsutum HOM05D003136 ORTHO05D003562 2.0e-13 79.0 100 43.0
Gorai.004G146700 Gossypium raimondii HOM05D003136 ORTHO05D003562 2.0e-13 79.0 100 43.0
MD07G1045700 Malus domestica HOM05D003136 ORTHO05D003562 2.0e-13 79.0 100 42.0
Psat3g017600 Pisum sativum HOM05D003136 ORTHO05D003562 2.0e-13 79.0 100 43.0
CARHR172570 Cardamine hirsuta HOM05D003136 ORTHO05D003562 2.6e-13 78.6 102 43.1
FAN09G0203 Fragaria x ananassa HOM05D003136 ORTHO05D003562 2.6e-13 78.6 100 41.0
Gohir.A11G106550 Gossypium hirsutum HOM05D003136 ORTHO05D003562 2.6e-13 78.6 103 43.7
Gohir.D08G142350 Gossypium hirsutum HOM05D003136 ORTHO05D003562 2.6e-13 78.6 100 43.0
CDE08G0964 Ceratophyllum demersum HOM05D003136 ORTHO05D003562 3.4e-13 78.2 100 41.0
AUR62024567 Chenopodium quinoa HOM05D003136 ORTHO05D003562 3.4e-13 78.2 109 40.4
Gohir.A11G275200 Gossypium hirsutum HOM05D003136 ORTHO05D003562 3.4e-13 78.2 100 43.0
Lalb_Chr04g0260111 Lupinus albus HOM05D003136 ORTHO05D003562 3.4e-13 78.2 100 44.0
RcHm_v2.0_Chr3g0458251 Rosa chinensis HOM05D003136 ORTHO05D003562 3.4e-13 78.2 100 40.0
VMungo1383G3057 Vigna mungo HOM05D003136 ORTHO05D003562 3.4e-13 78.2 101 41.6
Lalb_Chr15g0077921 Lupinus albus HOM05D003136 ORTHO05D003562 4.4e-13 77.8 100 44.0
TWI14G1445 Tripterygium wilfordii HOM05D003136 ORTHO05D003562 4.4e-13 77.8 100 45.0
Zm00001eb007030 Zea mays HOM05D003136 ORTHO05D003562 4.4e-13 77.8 106 42.5
CANSAT54G2960 Cannabis sativa HOM05D003136 ORTHO05D003562 5.7e-13 77.4 100 43.0
Cc01_g21900 Coffea canephora HOM05D003136 ORTHO05D003562 5.7e-13 77.4 103 41.7
DCAR_005729 Daucus carota HOM05D003136 ORTHO05D003562 5.7e-13 77.4 100 42.0
Dinv30935 Davidia involucrata HOM05D003136 ORTHO05D003562 5.7e-13 77.4 100 43.0
Prupe.6G306300 Prunus persica HOM05D003136 ORTHO05D003562 7.5e-13 77.0 100 43.0
Rhsim11G0100200 Rhododendron simsii HOM05D003136 ORTHO05D003562 7.5e-13 77.0 100 43.0
A07p25910 Brassica napus HOM05D003136 ORTHO05D003562 9.8e-13 76.6 100 42.0
BraA07t30238Z Brassica rapa HOM05D003136 ORTHO05D003562 9.8e-13 76.6 100 42.0
Phvul.001G216400 Phaseolus vulgaris HOM05D003136 ORTHO05D003562 9.8e-13 76.6 101 43.6
AT3G62240 Arabidopsis thaliana HOM05D003136 ORTHO05D003562 1.3e-12 76.3 102 41.2
Thhalv10005791m.g Eutrema salsugineum HOM05D003136 ORTHO05D003562 1.3e-12 76.3 103 40.8
Medtr7g110170 Medicago truncatula HOM05D003136 ORTHO05D003562 1.3e-12 76.3 99 43.4
Os05g0279400 Oryza sativa ssp. japonica HOM05D003136 ORTHO05D003562 1.7e-12 75.9 106 38.7
THA.LOC104827656 Tarenaya hassleriana HOM05D003136 ORTHO05D003562 1.7e-12 75.9 100 41.0
TPR.G4074 Trifolium pratense HOM05D003136 ORTHO05D003562 1.7e-12 75.9 100 42.0
Sp5g01150 Schrenkiella parvula HOM05D003136 ORTHO05D003562 2.2e-12 75.5 103 40.8
Zm00001eb401280 Zea mays HOM05D003136 ORTHO05D003562 2.2e-12 75.5 106 39.6
Ah.11g045790 Amaranthus hybridus HOM05D003136 ORTHO05D003562 2.8e-12 75.1 101 40.6
Carub.0005s2896 Capsella rubella HOM05D003136 ORTHO05D003562 2.8e-12 75.1 97 41.2
ATR0693G331 Amborella trichopoda HOM05D003136 ORTHO05D003562 3.7e-12 74.7 102 39.2
Aqoxy2G02557 Aquilegia oxysepala HOM05D003136 ORTHO05D003562 3.7e-12 74.7 101 42.6
Aqoxy329s004 Aquilegia oxysepala HOM05D003136 ORTHO05D003562 3.7e-12 74.7 101 42.6
Thhalv10001330m.g Eutrema salsugineum HOM05D003136 ORTHO05D003562 3.7e-12 74.7 100 41.0
Lalb_Chr06g0167071 Lupinus albus HOM05D003136 ORTHO05D003562 3.7e-12 74.7 101 43.6
CANSAT35G1199 Cannabis sativa HOM05D003136 ORTHO05D003562 4.8e-12 74.3 101 41.6
Potri.005G004600 Populus trichocarpa HOM05D003136 ORTHO05D003562 4.8e-12 74.3 97 43.3
RcHm_v2.0_Chr5g0011091 Rosa chinensis HOM05D003136 ORTHO05D003562 4.8e-12 74.3 97 43.3
Actinidia35493 Actinidia chinensis HOM05D003136 ORTHO05D003562 6.3e-12 73.9 99 42.4
AL5G44980 Arabidopsis lyrata HOM05D003136 ORTHO05D003562 6.3e-12 73.9 102 40.2
Lj1g0020409 Lotus japonicus HOM05D003136 ORTHO05D003562 6.3e-12 73.9 100 41.0
Manes.09G180200 Manihot esculenta HOM05D003136 ORTHO05D003562 6.3e-12 73.9 100 41.0
MD04G1187900 Malus domestica HOM05D003136 ORTHO05D003562 1.1e-11 73.2 103 39.8
DCAR_001894 Daucus carota HOM05D003136 ORTHO05D003562 1.4e-11 72.8 99 39.4
Potri.013G004200 Populus trichocarpa HOM05D003136 ORTHO05D003562 1.4e-11 72.8 97 42.3
RcHm_v2.0_Chr1g0326951 Rosa chinensis HOM05D003136 ORTHO05D003562 1.4e-11 72.8 100 41.0
Zm00001eb401260 Zea mays HOM05D003136 ORTHO05D003562 1.4e-11 72.8 103 38.8
FAN03G0588 Fragaria x ananassa HOM05D003136 ORTHO05D003562 1.8e-11 72.4 101 40.6
BcaB02g08802 Brassica carinata HOM05D003136 ORTHO05D003562 2.4e-11 72.0 98 42.9
FAN10G2106 Fragaria x ananassa HOM05D003136 ORTHO05D003562 2.4e-11 72.0 101 40.6
Lalb_Chr18g0046491 Lupinus albus HOM05D003136 ORTHO05D003562 2.4e-11 72.0 100 42.0
BcaC08g45188 Brassica carinata HOM05D003136 ORTHO05D003562 3.1e-11 71.6 105 39.0
C06p28160 Brassica napus HOM05D003136 ORTHO05D003562 3.1e-11 71.6 105 39.0
BolC6t37982H Brassica oleracea HOM05D003136 ORTHO05D003562 3.1e-11 71.6 105 39.0
FvH4_7g03760 Fragaria vesca HOM05D003136 ORTHO05D003562 4.1e-11 71.2 101 40.6
FAN01G0053 Fragaria x ananassa HOM05D003136 ORTHO05D003562 4.1e-11 71.2 101 40.6
FAN06G2586 Fragaria x ananassa HOM05D003136 ORTHO05D003562 4.1e-11 71.2 101 40.6
Aa31LG10G16180 Aethionema arabicum HOM05D003136 ORTHO05D003562 5.4e-11 70.9 105 38.1
Carub.0004s2983 Capsella rubella HOM05D003136 ORTHO05D003562 5.4e-11 70.9 100 39.0
Lju99C8T1 Lonicera japonica HOM05D003136 ORTHO05D003562 5.4e-11 70.9 99 43.4
SalBow6G6137 Salvia bowleyana HOM05D003136 ORTHO05D003562 7.0e-11 70.5 121 37.2
AL4G46630 Arabidopsis lyrata HOM05D003136 ORTHO05D003562 9.1e-11 70.1 100 41.0
A05p00710 Brassica napus HOM05D003136 ORTHO05D003562 9.1e-11 70.1 96 41.7
Sabra13G0003400 Salix brachista HOM05D003136 ORTHO05D003562 9.1e-11 70.1 97 40.2
BcaC02g12595 Brassica carinata HOM05D003136 ORTHO05D003562 1.6e-10 69.3 96 41.7
BolC4t21714H Brassica oleracea HOM05D003136 ORTHO05D003562 1.6e-10 69.3 96 41.7
Sp4g29080 Schrenkiella parvula HOM05D003136 ORTHO05D003562 2.0e-10 68.9 103 38.8
Mapoly0106s0017 Marchantia polymorpha HOM05D003136 ORTHO05D003562 2.7e-10 68.6 102 40.2
Os01g0251200 Oryza sativa ssp. japonica HOM05D003136 ORTHO05D003562 2.7e-10 68.6 109 35.8
AT2G47090 Arabidopsis thaliana HOM05D003136 ORTHO05D003562 3.5e-10 68.2 100 38.0
CARHR142470 Cardamine hirsuta HOM05D003136 ORTHO05D003562 3.5e-10 68.2 100 40.0
EL10Ac4g09540 Beta vulgaris HOM05D003136 ORTHO05D003562 4.5e-10 67.8 100 40.0
Oeu002574.1 Olea europaea HOM05D003136 ORTHO05D003562 4.5e-10 67.8 97 38.1
C04p00850 Brassica napus HOM05D003136 ORTHO05D003562 5.9e-10 67.4 96 40.6
Lj2C1213G0 Lonicera japonica HOM05D003136 ORTHO05D003562 5.9e-10 67.4 80 41.2
HPP92_002693 Vanilla planifolia HOM05D003136 ORTHO05D003562 5.9e-10 67.4 101 35.6
EL10As5g23580 Beta vulgaris HOM05D003136 ORTHO05D003562 1.0e-09 66.6 89 41.6
AUR62011734 Chenopodium quinoa HOM05D003136 ORTHO05D003562 1.3e-09 66.2 74 44.6
unitig_0.g290 Utricularia gibba HOM05D003136 ORTHO05D003562 8.5e-09 63.5 106 37.7
AUR62000461 Chenopodium quinoa HOM05D003136 ORTHO05D003562 2.5e-08 62.0 100 36.0
Hund09694 Selenicereus undatus HOM05D003136 ORTHO05D003562 7.2e-08 60.5 89 40.4
CAN.G179.41 Capsicum annuum HOM05D003136 ORTHO05D003562 2.7e-07 58.5 91 41.8
CBR_g4019 Chara braunii HOM05D003136 ORTHO05D003562 6.1e-07 57.4 74 37.8
Pp3c19_13370 Physcomitrium patens HOM05D003136 ORTHO05D003562 6.1e-07 57.4 105 36.2
SEGI_15107 Sequoiadendron giganteum HOM05D003136 ORTHO05D003562 6.1e-07 57.4 100 35.0
QL93p2005_0002 Quercus lobata HOM05D003136 ORTHO05D003562 8.0e-07 57.0 57 50.9
AagrBONN_evm.TU.Sc2ySwM_117.1657 Anthoceros agrestis HOM05D003136 ORTHO05D003562 1.4e-06 56.2 103 34.0
SMO367G0009 Selaginella moellendorffii HOM05D003136 ORTHO05D003562 1.8e-06 55.8 101 34.7
MBI18_g09618_MAGBIO Magnolia biondii HOM05D003136 ORTHO05D003562 2.3e-06 55.5 58 48.3
vmacro01615 Vaccinium macrocarpon HOM05D003136 ORTHO05D003562 8.8e-06 53.5 69 42.0


User provided reference genes

Program Settings