Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 2.9e-293 1011.1 499 100.0
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 1.1e-215 753.4 502 76.5
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 1.6e-211 739.6 502 71.9
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 1.4e-207 726.5 504 71.6
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.8e-207 726.1 499 71.5
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 1.9e-204 716.1 502 71.3
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 3.0e-202 708.8 503 68.4
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 2.9e-197 692.2 499 68.3
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.5e-196 689.9 505 67.7
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.8e-195 685.6 536 65.1
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.0e-194 683.7 489 69.1
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 1.8e-194 682.9 504 67.1
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 2.3e-194 682.6 504 65.5
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 5.2e-194 681.4 498 68.1
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 5.2e-194 681.4 501 67.1
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 1.5e-193 679.9 502 67.1
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 9.8e-193 677.2 494 67.6
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 1.3e-192 676.8 502 67.5
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 2.9e-192 675.6 507 66.3
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 3.7e-192 675.2 502 67.1
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 4.9e-192 674.9 505 67.3
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 8.3e-192 674.1 501 67.1
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 1.1e-191 673.7 506 67.2
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 2.4e-191 672.5 501 66.9
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 3.2e-191 672.2 498 66.5
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 4.1e-191 671.8 504 66.7
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 5.4e-191 671.4 500 66.8
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 9.2e-191 670.6 498 67.3
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 1.6e-190 669.8 474 70.7
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 2.0e-190 669.5 502 66.9
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 2.0e-190 669.5 502 66.3
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 2.7e-190 669.1 495 65.9
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.7e-190 669.1 506 66.8
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 6.0e-190 667.9 495 66.1
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 6.0e-190 667.9 499 66.7
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.0e-189 667.2 500 66.0
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 1.3e-189 666.8 501 66.1
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 1.7e-189 666.4 495 65.9
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 3.9e-189 665.2 496 65.5
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 5.0e-189 664.8 500 66.4
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 6.6e-189 664.5 496 65.5
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 6.6e-189 664.5 496 65.5
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 6.6e-189 664.5 500 66.6
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 8.6e-189 664.1 495 66.3
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 8.6e-189 664.1 495 65.3
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 8.6e-189 664.1 501 67.1
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 1.1e-188 663.7 509 65.6
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 1.1e-188 663.7 452 73.0
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 1.5e-188 663.3 495 66.3
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 1.9e-188 662.9 500 66.6
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.9e-188 662.9 498 65.5
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 2.5e-188 662.5 492 66.3
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 2.5e-188 662.5 495 66.3
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 2.5e-188 662.5 494 65.6
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 4.3e-188 661.8 496 65.3
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 4.3e-188 661.8 502 65.3
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 7.3e-188 661.0 486 67.1
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 1.2e-187 660.2 502 65.9
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 1.6e-187 659.8 498 65.3
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 1.6e-187 659.8 502 64.5
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 2.1e-187 659.4 503 64.8
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 2.8e-187 659.1 500 63.8
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 3.6e-187 658.7 495 65.5
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 3.6e-187 658.7 503 64.4
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 4.7e-187 658.3 494 65.6
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 8.0e-187 657.5 495 65.3
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 1.4e-186 656.8 499 65.1
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 2.3e-186 656.0 496 65.1
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 5.2e-186 654.8 496 65.7
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 6.8e-186 654.4 496 65.1
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 8.9e-186 654.1 500 64.8
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 1.2e-185 653.7 503 64.4
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 1.2e-185 653.7 500 63.6
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 1.5e-185 653.3 498 65.5
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 4.4e-185 651.7 496 64.7
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 5.8e-185 651.4 589 58.7
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 7.5e-185 651.0 503 64.4
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 9.8e-185 650.6 504 63.9
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 1.3e-184 650.2 500 63.6
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 2.2e-184 649.4 540 60.6
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 3.7e-184 648.7 499 63.7
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 4.9e-184 648.3 511 62.0
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 6.4e-184 647.9 499 64.3
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 8.3e-184 647.5 540 60.4
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 5.4e-183 644.8 502 64.9
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 9.2e-183 644.0 507 63.9
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.6e-182 643.3 506 64.2
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 2.1e-182 642.9 501 62.7
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 6.0e-182 641.3 502 62.5
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 7.8e-182 641.0 497 64.0
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.7e-181 639.8 497 64.2
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 6.6e-181 637.9 499 64.5
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.6e-179 633.3 499 64.7
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 2.3e-178 629.4 576 57.6
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 6.8e-178 627.9 469 66.5
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 2.6e-177 625.9 501 61.3
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 1.7e-176 623.2 468 66.7
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 2.9e-176 622.5 555 59.6
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 4.9e-176 621.7 468 66.5
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.0e-173 612.5 504 62.5
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 3.9e-173 612.1 498 61.8
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 8.6e-173 610.9 502 62.2
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 1.1e-172 610.5 499 62.1
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 1.9e-172 609.8 502 61.6
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 3.3e-172 609.0 505 61.4
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 7.3e-172 607.8 495 60.6
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.5e-169 600.1 501 61.5
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 7.6e-169 597.8 500 60.0
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 7.6e-169 597.8 501 61.7
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 2.9e-168 595.9 502 59.8
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 3.5e-166 589.0 452 63.9
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.3e-165 587.0 513 59.1
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.0e-165 585.9 504 60.3
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.5e-164 582.8 504 59.9
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 3.3e-164 582.4 453 63.8
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 4.3e-164 582.0 450 65.3
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 9.6e-164 580.9 447 63.5
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 1.3e-163 580.5 502 60.0
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 1.3e-163 580.5 500 59.2
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 8.1e-163 577.8 458 64.0
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 1.5e-161 573.5 511 58.5
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.1e-159 567.4 528 58.0
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 1.0e-144 517.7 390 65.6
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.2e-142 510.8 387 64.6
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 1.4e-138 497.3 536 50.4
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 2.4e-138 496.5 652 45.6
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 3.2e-135 486.1 519 49.3
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 2.5e-132 476.5 421 57.5
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 2.2e-131 473.4 493 53.8
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 9.7e-124 448.0 457 54.9
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 1.1e-111 407.9 459 50.8
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.8e-106 390.6 273 68.1
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.6e-105 387.5 278 70.5
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 1.7e-104 384.0 279 66.3
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 7.2e-103 378.6 331 57.7
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 6.6e-88 328.9 240 64.6
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 4.0e-85 319.7 246 64.2
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 1.6e-81 307.8 256 60.2
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 1.9e-74 284.3 499 39.3
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 1.2e-65 255.0 580 31.4
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.3e-64 250.8 204 62.3
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 2.0e-60 237.7 369 39.0
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 6.4e-59 232.6 212 58.5
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 1.5e-44 184.9 138 63.8
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.1e-39 168.7 181 48.1
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 3.4e-36 157.1 110 69.1
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 3.8e-35 153.7 187 41.7
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.1e-34 152.1 121 63.6
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.4e-26 125.2 251 35.5
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.2e-26 123.6 251 35.1
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 7.1e-26 122.9 68 79.4
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 2.1e-22 111.3 100 59.0
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 6.9e-21 106.3 63 79.4
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 7.2e-18 96.3 172 30.8
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 8.7e-16 89.4 72 63.9
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 6.3e-14 83.2 115 44.3
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 1.2e-12 79.0 61 62.3
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 6.5e-11 73.2 81 49.4
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 4.2e-10 70.5 247 25.5
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 2.3e-08 64.7 137 29.2
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 1.1e-07 62.4 36 75.0
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.6e-07 61.2 41 65.9
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.7e-07 59.3 108 39.8


User provided reference genes

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