Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.3e-241 838.6 424 100.0
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 3.3e-171 605.5 423 75.2
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 8.4e-143 511.1 428 66.6
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.2e-136 490.7 431 60.3
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 1.8e-129 466.8 435 58.2
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 4.9e-127 458.8 434 56.2
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 9.3e-126 454.5 441 56.0
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 6.7e-124 448.4 453 54.3
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.1e-123 447.6 455 54.1
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.9e-123 446.8 432 55.3
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 5.3e-121 438.7 453 53.4
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.5e-120 437.2 455 52.1
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 3.8e-119 432.6 431 54.8
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 3.8e-119 432.6 453 51.7
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 6.0e-117 425.2 451 51.4
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 2.3e-116 423.3 444 52.5
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 3.9e-116 422.5 451 51.4
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 1.5e-115 420.6 448 51.6
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 2.5e-115 419.9 448 51.3
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 4.3e-115 419.1 458 51.1
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 5.7e-115 418.7 429 56.4
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 7.4e-115 418.3 442 52.3
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 7.4e-115 418.3 449 51.4
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 2.8e-114 416.4 456 50.2
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 6.3e-114 415.2 436 51.8
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 1.8e-113 413.7 446 51.8
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 4.1e-113 412.5 451 50.1
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 4.1e-113 412.5 448 52.0
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 5.3e-113 412.1 443 52.4
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 6.9e-113 411.8 443 51.0
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 9.0e-113 411.4 434 52.8
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 9.0e-113 411.4 451 51.2
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 2.6e-112 409.8 451 51.0
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 1.7e-111 407.1 448 50.9
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 1.1e-110 404.4 442 50.9
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 1.4e-110 404.1 451 49.9
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 2.1e-109 400.2 431 49.9
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 6.1e-109 398.7 431 49.9
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 7.9e-109 398.3 438 51.6
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 7.9e-109 398.3 464 47.6
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 7.9e-109 398.3 437 51.3
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 1.4e-108 397.5 431 49.9
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 5.1e-108 395.6 441 48.3
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 8.8e-108 394.8 428 50.5
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 1.5e-107 394.0 438 49.8
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 2.0e-107 393.7 440 51.1
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 2.0e-107 393.7 446 49.3
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.3e-107 392.9 417 52.3
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 7.4e-107 391.7 444 50.7
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.7e-106 390.6 435 50.6
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 2.2e-106 390.2 432 49.3
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.2e-106 390.2 445 49.4
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 2.8e-106 389.8 445 49.9
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 3.7e-106 389.4 434 50.0
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 3.7e-106 389.4 425 50.4
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.7e-106 389.4 421 51.1
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 4.8e-106 389.0 439 49.2
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 1.1e-105 387.9 440 49.5
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 2.4e-105 386.7 448 46.7
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 2.4e-105 386.7 434 49.8
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 4.1e-105 386.0 424 48.8
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 5.3e-105 385.6 440 48.2
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 5.3e-105 385.6 437 49.9
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 6.9e-105 385.2 453 48.3
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 6.9e-105 385.2 428 50.0
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 9.1e-105 384.8 427 47.8
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 9.1e-105 384.8 438 50.0
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 9.1e-105 384.8 413 51.3
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 1.2e-104 384.4 429 47.8
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 1.2e-104 384.4 453 47.2
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 1.5e-104 384.0 491 45.6
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 2.6e-104 383.3 439 47.2
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 7.7e-104 381.7 446 48.9
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 1.3e-103 380.9 424 48.6
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 1.3e-103 380.9 434 50.0
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.3e-103 380.9 439 49.4
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.1e-102 377.9 428 48.8
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.9e-102 377.1 428 48.6
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.5e-102 375.6 428 48.4
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 1.2e-101 374.4 469 45.4
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 4.7e-101 372.5 423 48.7
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 7.9e-101 371.7 425 47.5
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 1.4e-100 370.9 435 47.4
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 1.4e-100 370.9 447 49.0
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 3.0e-100 369.8 433 47.6
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.9e-100 369.4 425 48.5
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.9e-100 369.4 425 47.1
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 3.9e-100 369.4 433 47.6
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 3.9e-100 369.4 442 47.3
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.1e-100 369.0 425 47.1
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 6.7e-100 368.6 435 47.1
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 2.0e-99 367.1 435 47.1
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 2.0e-99 367.1 473 44.4
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 1.3e-98 364.4 449 46.1
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 3.1e-97 359.8 441 43.8
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 7.0e-97 358.6 456 45.0
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 1.5e-96 357.5 435 45.5
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 3.5e-96 356.3 336 56.0
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 6.5e-95 352.1 415 49.2
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 2.1e-93 347.1 417 48.2
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 2.0e-91 340.5 432 46.1
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 2.0e-91 340.5 370 49.5
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 9.7e-91 338.2 445 43.6
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 9.7e-91 338.2 416 47.4
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 1.3e-90 337.8 404 49.3
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 1.6e-88 330.9 441 44.4
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 2.0e-88 330.5 423 43.0
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 2.6e-88 330.1 560 39.3
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 5.9e-88 328.9 283 58.3
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.0e-87 328.2 376 49.5
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 1.9e-86 323.9 418 44.7
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 3.2e-86 323.2 443 43.8
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 3.2e-86 323.2 433 42.0
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 1.0e-84 318.2 428 43.5
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 1.0e-84 318.2 433 41.6
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 1.8e-84 317.4 443 42.4
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 1.8e-84 317.4 259 58.3
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 2.3e-84 317.0 259 63.3
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.3e-82 311.2 248 59.7
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.3e-82 311.2 248 59.7
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 2.8e-82 310.1 248 59.7
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 1.0e-76 291.6 259 57.1
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.6e-69 267.7 319 50.2
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 1.2e-67 261.5 416 38.9
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 2.9e-58 230.3 442 36.7
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.2e-53 214.9 217 50.2
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 5.8e-51 206.1 424 35.6
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 1.9e-49 201.1 429 33.1
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 3.0e-47 193.7 434 31.8
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 5.6e-46 189.5 433 31.9
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 6.4e-42 176.0 254 39.4
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 2.3e-39 167.5 301 37.5
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 1.6e-37 161.4 319 35.1
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 5.2e-36 156.4 136 52.2
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 5.2e-36 156.4 248 39.1
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 3.8e-34 150.2 137 56.2
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 3.0e-23 114.0 397 27.5
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.1e-23 113.2 106 50.9
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 1.9e-22 111.3 419 25.5
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 2.8e-21 107.5 239 28.9
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 2.8e-21 107.5 192 30.7
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 5.3e-20 103.2 99 52.5
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 7.6e-19 99.4 186 38.7
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 9.9e-19 99.0 186 38.2
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 6.4e-18 96.3 148 42.6
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 7.1e-17 92.8 138 45.7
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 1.0e-15 89.0 246 26.4
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 2.1e-13 81.3 117 44.4
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 1.8e-12 78.2 134 38.8
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 1.8e-12 78.2 134 38.8
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 6.9e-12 76.3 120 36.7
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 9.0e-12 75.9 108 48.1
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.6e-11 74.3 139 41.0
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.2e-10 71.2 138 37.7
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 2.5e-09 67.8 198 32.8
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 7.9e-08 62.8 77 45.5
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.1e-06 58.9 54 59.3
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.3e-06 57.0 54 57.4


User provided reference genes

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