Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 3.4e-228 794.7 403 100.0
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 1.7e-171 606.3 406 76.4
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 2.4e-165 585.9 416 74.5
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 8.5e-163 577.4 405 76.5
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 7.9e-108 394.8 427 55.7
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 7.6e-103 378.3 434 52.5
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 1.4e-101 374.0 428 52.6
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 1.9e-101 373.6 425 50.1
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 3.2e-101 372.9 425 51.3
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 1.2e-100 370.9 424 51.9
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 5.6e-98 362.1 427 51.5
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 2.0e-95 353.6 425 50.4
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 2.0e-95 353.6 425 51.1
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 2.6e-95 353.2 428 49.3
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 3.4e-95 352.8 418 51.2
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 1.7e-94 350.5 429 49.9
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 1.7e-94 350.5 424 49.3
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 3.8e-94 349.4 425 50.8
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 3.2e-93 346.3 424 48.1
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 4.2e-93 345.9 425 49.4
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 4.2e-93 345.9 424 47.9
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 1.2e-92 344.4 425 48.2
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 2.7e-92 343.2 425 48.2
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 3.0e-91 339.7 436 48.2
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 8.7e-91 338.2 423 47.8
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.5e-90 337.4 390 50.8
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 1.6e-89 334.0 432 50.5
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 8.2e-89 331.6 422 48.1
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 1.4e-88 330.9 422 48.6
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 2.4e-88 330.1 439 46.2
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 2.6e-87 326.6 420 45.0
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 4.5e-87 325.9 424 46.7
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.2e-86 323.6 424 46.5
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 2.9e-86 323.2 429 47.6
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 5.0e-86 322.4 415 47.2
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 7.2e-85 318.5 422 47.2
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 7.9e-84 315.1 422 46.7
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 1.8e-83 313.9 354 52.5
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 2.3e-83 313.5 422 46.4
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 5.1e-83 312.4 422 46.2
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 1.1e-82 311.2 423 45.9
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.5e-82 310.8 422 46.2
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 1.9e-82 310.5 426 47.2
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 4.3e-82 309.3 436 44.5
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 7.4e-82 308.5 429 45.7
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 7.4e-82 308.5 432 44.4
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.7e-81 307.4 429 45.7
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.1e-80 304.7 422 44.1
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.1e-80 304.7 429 45.2
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 5.3e-80 302.4 420 45.2
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.6e-79 300.1 419 44.6
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 2.6e-79 300.1 400 45.8
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 4.5e-79 299.3 444 43.2
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 1.3e-78 297.7 430 44.7
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 2.9e-78 296.6 423 44.7
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 1.9e-77 293.9 453 41.3
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 5.5e-77 292.4 352 51.7
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 5.5e-77 292.4 402 45.3
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 5.5e-77 292.4 380 46.8
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 1.2e-76 291.2 355 49.9
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 7.9e-76 288.5 423 43.7
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.5e-74 284.3 325 52.9
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 2.6e-74 283.5 436 41.5
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 2.6e-74 283.5 430 43.5
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 3.3e-74 283.1 421 42.0
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 9.7e-74 281.6 430 44.7
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 2.2e-73 280.4 429 43.4
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 3.7e-73 279.6 424 43.4
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 3.7e-73 279.6 424 43.4
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 3.7e-73 279.6 430 44.9
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 3.7e-73 279.6 425 42.1
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 6.3e-73 278.9 421 43.5
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 1.8e-72 277.3 425 44.9
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 3.1e-72 276.6 438 43.8
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 4.1e-72 276.2 446 40.6
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 5.3e-72 275.8 433 42.7
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 9.1e-72 275.0 424 43.4
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 1.5e-71 274.2 430 41.6
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 3.4e-71 273.1 431 42.5
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 7.7e-71 271.9 428 42.8
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 1.0e-70 271.6 426 45.1
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 2.2e-70 270.4 431 44.3
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 2.9e-70 270.0 420 42.4
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 2.9e-70 270.0 430 44.2
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 5.0e-70 269.2 418 43.5
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 1.4e-69 267.7 433 42.7
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 2.5e-69 266.9 449 40.8
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 7.2e-69 265.4 426 43.2
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 9.4e-69 265.0 426 41.3
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 1.2e-68 264.6 424 41.7
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.6e-68 264.2 431 39.7
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 1.8e-67 260.8 431 40.8
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 2.3e-67 260.4 422 42.4
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 5.2e-67 259.2 337 48.4
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 2.2e-65 253.8 425 40.0
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 6.3e-65 252.3 425 38.8
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 2.2e-62 243.8 429 38.7
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 5.0e-62 242.7 427 40.5
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 8.5e-62 241.9 421 39.4
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 1.5e-61 241.1 425 36.9
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 1.9e-61 240.7 426 37.3
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 4.2e-61 239.6 404 37.4
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 5.5e-61 239.2 426 37.1
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 9.4e-61 238.4 483 37.7
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 4.7e-60 236.1 426 37.3
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 1.0e-59 235.0 398 39.9
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.4e-59 234.6 426 35.9
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 2.3e-59 233.8 411 39.9
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 5.2e-59 232.6 413 37.8
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 7.5e-58 228.8 266 49.6
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 1.3e-57 228.0 266 48.9
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.7e-57 227.6 413 40.2
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 4.8e-57 226.1 424 36.3
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 8.2e-57 225.3 426 38.7
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 1.6e-55 221.1 421 39.0
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 2.0e-55 220.7 425 36.2
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 3.8e-54 216.5 434 37.6
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.2e-52 211.5 423 34.5
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 2.7e-52 210.3 413 36.8
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 2.7e-52 210.3 179 67.0
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 3.6e-52 209.9 403 36.0
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 2.2e-49 200.7 426 37.8
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 2.0e-47 194.1 426 35.9
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 7.7e-47 192.2 425 35.1
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 2.3e-43 180.6 351 37.3
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 1.5e-42 177.9 344 37.8
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 1.4e-40 171.4 408 32.6
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 2.1e-36 157.5 368 33.7
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 6.1e-36 156.0 295 36.9
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 1.4e-35 154.8 231 40.3
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.7e-33 147.9 215 41.4
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 1.7e-33 147.9 170 50.6
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 5.2e-27 126.3 247 38.5
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 8.9e-27 125.6 187 42.2
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 8.9e-27 125.6 181 43.1
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 2.6e-26 124.0 198 40.4
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 7.5e-26 122.5 187 41.2
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 7.5e-26 122.5 187 41.2
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 1.7e-25 121.3 172 43.6
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 1.9e-24 117.9 422 27.7
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 8.1e-20 102.4 83 66.3
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 2.6e-18 97.4 120 51.7
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 3.6e-12 77.0 71 52.1
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 6.2e-12 76.3 62 56.5
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 2.4e-11 74.3 84 45.2
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 3.1e-11 73.9 86 44.2
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 3.1e-11 73.9 86 44.2
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 5.8e-10 69.7 65 53.8
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 5.8e-10 69.7 65 53.8
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 5.8e-10 69.7 65 53.8
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 7.6e-10 69.3 152 32.9
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 9.9e-10 68.9 60 65.0
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 9.9e-10 68.9 102 41.2
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 1.3e-09 68.6 192 28.1
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 2.9e-09 67.4 82 41.5
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 5.4e-08 63.2 60 48.3
Hma1.2p1_0377F.1_g139390 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.6e-07 61.6 58 55.2
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 4.6e-07 60.1 57 50.9
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 4.6e-07 60.1 57 50.9
arahy.Tifrunner.gnm1.ann1.59R5K9 Arachis hypogaea HOM05D004053 ORTHO05D005065 3.9e-06 57.0 70 42.9


User provided reference genes

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