Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 0.0e+00 2020.4 1047 100.0
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 0.0e+00 1678.7 1048 84.5
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 1.9e-222 776.9 1067 45.5
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 7.6e-195 685.3 1062 41.1
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 4.6e-192 676.0 1076 41.1
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 1.5e-190 671.0 1078 39.9
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.2e-187 661.4 1076 40.3
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 1.5e-179 634.4 1107 40.0
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 3.2e-177 626.7 1075 38.1
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 2.3e-175 620.5 1089 37.2
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 3.7e-173 613.2 1103 37.5
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 1.1e-172 611.7 1094 38.2
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 1.1e-172 611.7 1110 41.1
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 7.6e-171 605.5 1066 37.3
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 2.4e-169 600.5 1077 38.0
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 4.2e-169 599.7 1077 38.3
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 2.7e-168 597.0 1091 36.7
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 6.0e-168 595.9 1069 37.5
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 6.7e-167 592.4 1050 38.0
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 1.5e-166 591.3 1084 37.0
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 3.3e-166 590.1 1075 37.7
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 1.4e-164 584.7 1065 37.1
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 2.4e-164 583.9 1068 38.1
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 3.1e-164 583.6 1077 37.2
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 2.6e-163 580.5 1229 35.1
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 6.5e-162 575.9 1080 38.1
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 1.1e-161 575.1 1073 39.1
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 1.4e-161 574.7 1071 36.7
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 2.1e-160 570.9 1069 37.0
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 2.7e-160 570.5 1126 35.9
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 5.1e-159 566.2 1232 34.3
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 8.7e-159 565.5 1113 38.7
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 1.9e-158 564.3 1130 38.1
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 3.3e-158 563.5 1114 35.8
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 1.3e-157 561.6 1079 37.0
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 8.2e-157 558.9 1113 35.9
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 2.0e-155 554.3 1103 38.4
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 4.5e-155 553.1 1104 38.3
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 1.0e-154 552.0 952 37.4
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 1.3e-154 551.6 1086 38.2
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 5.0e-154 549.7 1113 35.8
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 1.1e-153 548.5 1075 35.1
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 1.1e-153 548.5 1060 34.6
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 1.4e-153 548.1 1079 34.7
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 1.6e-152 544.7 1079 34.2
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 1.6e-152 544.7 1079 34.2
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 6.1e-152 542.7 1077 35.3
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 7.9e-152 542.3 1081 35.1
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 7.9e-152 542.3 1081 35.1
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 1.8e-151 541.2 1074 36.2
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 3.0e-151 540.4 1076 34.6
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 2.2e-149 534.3 1076 35.2
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 8.2e-149 532.3 1098 35.6
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 1.8e-148 531.2 1081 33.9
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 5.3e-148 529.6 1075 34.3
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 1.5e-147 528.1 1181 33.5
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 1.7e-146 524.6 1084 33.8
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 1.7e-146 524.6 1083 33.7
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 2.2e-146 524.2 1092 35.0
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 6.5e-146 522.7 1079 33.4
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 5.5e-145 519.6 1120 33.9
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 3.6e-144 516.9 1092 34.0
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.6e-144 516.9 1088 38.0
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 6.1e-144 516.2 1071 34.0
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 6.1e-144 516.2 1077 34.6
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 1.0e-143 515.4 1075 35.0
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 3.9e-143 513.5 1089 33.1
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 8.8e-143 512.3 1082 32.9
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 2.0e-142 511.1 1074 34.1
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 2.6e-142 510.8 1157 33.8
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 7.4e-142 509.2 1073 34.7
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 1.4e-140 505.0 1095 36.0
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.1e-140 503.4 883 39.4
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 5.3e-140 503.1 1035 35.7
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 2.0e-139 501.1 1080 34.3
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.6e-139 500.7 1159 36.1
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 3.5e-139 500.4 1109 33.5
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 4.5e-139 500.0 1096 33.8
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 5.9e-139 499.6 1046 33.4
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 1.7e-138 498.0 883 38.2
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 2.2e-138 497.7 1079 34.1
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 2.2e-138 497.7 1046 34.1
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 3.6e-136 490.3 1074 33.0
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 2.2e-133 481.1 1064 33.8
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 4.8e-133 479.9 1068 33.2
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 1.4e-132 478.4 1047 34.0
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 4.1e-132 476.9 1111 33.4
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 1.6e-131 474.9 529 48.0
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 6.5e-130 469.5 1047 33.6
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 8.0e-128 462.6 1070 32.6
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 7.5e-126 456.1 1062 32.1
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 7.5e-126 456.1 1085 32.4
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 1.1e-124 452.2 1089 32.5
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 4.1e-124 450.3 492 50.0
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 8.5e-122 442.6 1077 31.4
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 7.2e-121 439.5 901 36.5
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 1.2e-120 438.7 1045 32.2
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 8.3e-117 426.0 1430 28.5
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 2.1e-112 411.4 815 37.2
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 3.7e-109 400.6 835 33.1
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 7.8e-107 392.9 784 38.1
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 1.3e-106 392.1 1098 31.0
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 6.6e-106 389.8 748 36.1
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 6.8e-103 379.8 821 36.3
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 2.6e-102 377.9 721 38.4
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 4.3e-97 360.5 1053 28.6
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 1.4e-95 355.5 1078 29.4
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 2.3e-95 354.8 283 59.4
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.1e-87 329.3 450 43.3
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 1.1e-81 309.3 485 35.3
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 3.3e-81 307.8 751 32.2
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 1.1e-76 292.7 485 37.3
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 1.9e-76 292.0 514 35.4
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.9e-68 265.4 1004 29.7
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 3.0e-66 258.1 313 46.0
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.3e-61 242.7 296 46.3
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.0e-50 204.9 182 56.6
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 1.1e-49 203.0 708 26.7
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 3.7e-48 198.0 194 54.1
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 1.3e-45 189.5 262 38.5
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 1.4e-44 186.0 272 42.6
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 1.2e-43 183.0 183 51.4
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.4e-39 168.7 227 45.8
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.1e-36 159.8 155 55.5
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 1.4e-36 159.5 128 57.8
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.2e-35 156.4 211 44.1
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 1.8e-34 152.5 283 39.2
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 4.8e-32 144.4 148 43.2
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 1.0e-26 126.7 103 58.3
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 2.3e-26 125.6 207 41.1
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 9.7e-25 120.2 226 39.8
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 6.3e-24 117.5 213 39.0
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.1e-23 115.2 213 35.2
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 4.1e-23 114.8 105 43.8
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 2.2e-21 109.0 272 31.6
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 1.5e-20 106.3 202 38.1
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 1.4e-18 99.8 135 43.0
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.1e-17 96.7 180 34.4
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.6e-14 86.3 81 49.4
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.5e-14 85.1 645 28.8
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 1.0e-13 83.6 78 53.8
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.6e-11 76.3 69 49.3
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 3.6e-11 75.1 169 36.1
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 2.2e-08 65.9 62 53.2
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 2.0e-06 59.3 59 42.4


User provided reference genes

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