Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 4.8e-35 150.6 75 100.0
Lsat_1_v5_gn_1_105600 Lactuca sativa HOM05D003654 ORTHO05D004176 9.7e-20 99.8 75 68.0
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 3.8e-16 87.8 51 76.5
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 1.0e-13 79.7 72 56.9
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 9.1e-10 66.6 41 68.3
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.6e-09 65.9 43 69.8
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.6e-09 65.9 43 69.8
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 1.6e-09 65.9 70 51.4
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 2.0e-09 65.5 57 54.4
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 2.7e-09 65.1 59 52.5
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 2.7e-09 65.1 59 52.5
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 2.7e-09 65.1 59 52.5
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 2.7e-09 65.1 59 52.5
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 2.7e-09 65.1 49 61.2
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.7e-09 65.1 60 55.0
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 4.5e-09 64.3 57 54.4
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 4.5e-09 64.3 37 75.7
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 4.5e-09 64.3 37 75.7
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 5.9e-09 63.9 39 76.9
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.0e-08 63.2 40 72.5
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.0e-08 63.2 40 72.5
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 1.0e-08 63.2 33 84.8
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 1.0e-08 63.2 33 84.8
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 1.7e-08 62.4 58 55.2
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 1.7e-08 62.4 58 55.2
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 1.7e-08 62.4 58 55.2
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.7e-08 62.4 68 47.1
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 2.2e-08 62.0 36 72.2
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.2e-08 62.0 81 42.0
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 2.9e-08 61.6 36 75.0
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 3.8e-08 61.2 82 43.9
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 3.8e-08 61.2 65 50.8
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.8e-08 61.2 33 78.8
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 5.0e-08 60.8 68 47.1
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 5.0e-08 60.8 68 47.1
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 5.0e-08 60.8 37 70.3
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 6.5e-08 60.5 37 67.6
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 6.5e-08 60.5 39 66.7
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 8.5e-08 60.1 39 66.7
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 8.5e-08 60.1 46 60.9
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 8.5e-08 60.1 48 60.4
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.1e-07 59.7 36 75.0
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 1.1e-07 59.7 34 73.5
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.1e-07 59.7 32 81.2
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 1.5e-07 59.3 52 53.8
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 1.5e-07 59.3 46 56.5
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 1.5e-07 59.3 34 73.5
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 1.9e-07 58.9 33 75.8
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.9e-07 58.9 43 62.8
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 1.9e-07 58.9 37 67.6
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.9e-07 58.9 36 69.4
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.9e-07 58.9 36 69.4
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.9e-07 58.9 36 69.4
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.9e-07 58.9 36 69.4
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.9e-07 58.9 36 69.4
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 1.9e-07 58.9 54 55.6
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 2.5e-07 58.5 64 51.6
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 2.5e-07 58.5 36 66.7
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 2.5e-07 58.5 46 63.0
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 3.2e-07 58.2 32 78.1
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 3.2e-07 58.2 53 56.6
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 3.2e-07 58.2 36 66.7
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 3.2e-07 58.2 36 66.7
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 3.2e-07 58.2 34 73.5
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 3.2e-07 58.2 33 75.8
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 4.2e-07 57.8 63 49.2
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 4.2e-07 57.8 36 66.7
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.2e-07 57.8 82 42.7
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 4.2e-07 57.8 34 73.5
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 4.2e-07 57.8 68 48.5
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 5.5e-07 57.4 42 66.7
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 5.5e-07 57.4 79 49.4
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 5.5e-07 57.4 33 75.8
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 5.5e-07 57.4 42 57.1
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 7.2e-07 57.0 33 72.7
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 7.2e-07 57.0 33 72.7
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 7.2e-07 57.0 36 66.7
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 9.4e-07 56.6 47 57.4
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 9.4e-07 56.6 36 61.1
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 9.4e-07 56.6 36 61.1
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 9.4e-07 56.6 36 61.1
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 9.4e-07 56.6 48 56.2
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 9.4e-07 56.6 52 53.8
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 9.4e-07 56.6 40 65.0
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 9.4e-07 56.6 33 75.8
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 1.2e-06 56.2 34 73.5
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 1.2e-06 56.2 30 80.0
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 1.6e-06 55.8 49 55.1
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.6e-06 55.8 53 52.8
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 1.6e-06 55.8 54 55.6
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 2.1e-06 55.5 39 61.5
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 2.1e-06 55.5 34 70.6
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.1e-06 55.5 36 63.9
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 2.1e-06 55.5 34 67.6
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 2.7e-06 55.1 32 78.1
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.7e-06 55.1 64 50.0
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 3.6e-06 54.7 39 61.5
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 3.6e-06 54.7 41 63.4
Lj3g0024349 Lotus japonicus HOM05D003654 ORTHO05D004176 3.6e-06 54.7 65 44.6
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 3.6e-06 54.7 57 49.1
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 3.6e-06 54.7 42 54.8
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 3.6e-06 54.7 55 54.5
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.7e-06 54.3 34 70.6
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 4.7e-06 54.3 35 62.9
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 4.7e-06 54.3 32 75.0
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 6.1e-06 53.9 37 64.9
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 6.1e-06 53.9 33 72.7
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 8.0e-06 53.5 37 62.2
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 8.0e-06 53.5 54 53.7
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 8.0e-06 53.5 74 43.2
Potri.009G058500 Populus trichocarpa HOM05D003654 ORTHO05D004176 8.0e-06 53.5 42 59.5


User provided reference genes

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