Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G1760 Erigeron canadensis HOM05D006331 ORTHO05D008043 5.4e-201 704.1 357 100.0
HanXRQChr01g0017771 Helianthus annuus HOM05D006331 ORTHO05D008043 6.5e-130 468.0 303 82.2
Lsat_1_v5_gn_1_81581 Lactuca sativa HOM05D006331 ORTHO05D008043 1.5e-118 430.3 296 79.1
Dinv30329 Davidia involucrata HOM05D006331 ORTHO05D008043 1.4e-100 370.5 298 66.8
GSVIVG01022367001 Vitis vinifera HOM05D006331 ORTHO05D008043 1.9e-97 360.1 258 70.9
Cfa002168 Carpinus fangiana HOM05D006331 ORTHO05D008043 4.2e-97 359.0 295 65.1
Cfa002176 Carpinus fangiana HOM05D006331 ORTHO05D008043 4.2e-97 359.0 295 65.1
Ciclev10000807m.g Citrus clementina HOM05D006331 ORTHO05D008043 4.2e-97 359.0 305 60.0
Prupe.5G076700 Prunus persica HOM05D006331 ORTHO05D008043 4.2e-97 359.0 307 62.5
Eucgr.H05078 Eucalyptus grandis HOM05D006331 ORTHO05D008043 5.5e-97 358.6 267 68.9
Thecc.01G141800 Theobroma cacao HOM05D006331 ORTHO05D008043 5.5e-97 358.6 276 66.3
TAR376G0453 Trochodendron aralioides HOM05D006331 ORTHO05D008043 3.6e-96 355.9 252 72.6
CiPaw.03G115600 Carya illinoinensis HOM05D006331 ORTHO05D008043 6.1e-96 355.1 305 63.9
PGR102G1699 Punica granatum HOM05D006331 ORTHO05D008043 6.1e-96 355.1 295 61.0
Glyma.05G195400 Glycine max HOM05D006331 ORTHO05D008043 8.0e-96 354.8 268 68.3
TPR.G37385 Trifolium pratense HOM05D006331 ORTHO05D008043 8.0e-96 354.8 269 70.6
Ca_17611_v3 Cicer arietinum L. HOM05D006331 ORTHO05D008043 2.3e-95 353.2 292 64.7
Medtr8g094730 Medicago truncatula HOM05D006331 ORTHO05D008043 2.3e-95 353.2 267 67.0
FAN13G1065 Fragaria x ananassa HOM05D006331 ORTHO05D008043 5.2e-95 352.1 289 65.4
CSS0035477 Camellia sinensis var. sinensis HOM05D006331 ORTHO05D008043 8.8e-95 351.3 241 75.9
CSS0012546 Camellia sinensis var. sinensis HOM05D006331 ORTHO05D008043 1.2e-94 350.9 241 75.9
FvH4_5g00410 Fragaria vesca HOM05D006331 ORTHO05D008043 1.5e-94 350.5 289 65.1
FAN18G4276 Fragaria x ananassa HOM05D006331 ORTHO05D008043 1.5e-94 350.5 289 65.1
QL10p040044 Quercus lobata HOM05D006331 ORTHO05D008043 1.5e-94 350.5 291 64.6
Thhalv10013258m.g Eutrema salsugineum HOM05D006331 ORTHO05D008043 3.4e-94 349.4 253 70.0
AT5G08740 Arabidopsis thaliana HOM05D006331 ORTHO05D008043 4.4e-94 349.0 243 70.8
Duzib264G0015 Durio zibethinus HOM05D006331 ORTHO05D008043 4.4e-94 349.0 250 69.2
BolC9t59572H Brassica oleracea HOM05D006331 ORTHO05D008043 7.5e-94 348.2 260 69.6
THA.LOC104819353 Tarenaya hassleriana HOM05D006331 ORTHO05D008043 7.5e-94 348.2 253 70.4
vmacro11024 Vaccinium macrocarpon HOM05D006331 ORTHO05D008043 7.5e-94 348.2 298 63.8
Lj4g0002141 Lotus japonicus HOM05D006331 ORTHO05D008043 9.8e-94 347.8 268 67.9
CANSAT01G2335 Cannabis sativa HOM05D006331 ORTHO05D008043 1.7e-93 347.1 271 66.8
CARHR204260 Cardamine hirsuta HOM05D006331 ORTHO05D008043 1.7e-93 347.1 243 70.8
A10p28040 Brassica napus HOM05D006331 ORTHO05D008043 2.8e-93 346.3 256 70.3
C09p68240 Brassica napus HOM05D006331 ORTHO05D008043 2.8e-93 346.3 260 69.2
Gohir.D12G001700 Gossypium hirsutum HOM05D006331 ORTHO05D008043 3.7e-93 345.9 298 64.8
Psat7g043600 Pisum sativum HOM05D006331 ORTHO05D008043 3.7e-93 345.9 291 64.9
Sp6g34130 Schrenkiella parvula HOM05D006331 ORTHO05D008043 3.7e-93 345.9 253 69.2
Gohir.A12G001900 Gossypium hirsutum HOM05D006331 ORTHO05D008043 4.8e-93 345.5 298 64.1
BraA10t44853Z Brassica rapa HOM05D006331 ORTHO05D008043 6.3e-93 345.1 255 70.2
AUR62000551 Chenopodium quinoa HOM05D006331 ORTHO05D008043 6.3e-93 345.1 295 64.1
MD04G1081700 Malus domestica HOM05D006331 ORTHO05D008043 1.1e-92 344.4 292 63.7
AL6G19490 Arabidopsis lyrata HOM05D006331 ORTHO05D008043 1.8e-92 343.6 242 71.1
Gorai.008G001100 Gossypium raimondii HOM05D006331 ORTHO05D008043 3.1e-92 342.8 298 64.4
Phvul.002G275600 Phaseolus vulgaris HOM05D006331 ORTHO05D008043 4.1e-92 342.4 267 64.8
Aqoxy6G00239 Aquilegia oxysepala HOM05D006331 ORTHO05D008043 9.1e-92 341.3 303 58.4
Potri.007G098700 Populus trichocarpa HOM05D006331 ORTHO05D008043 9.1e-92 341.3 238 69.3
RcHm_v2.0_Chr7g0202111 Rosa chinensis HOM05D006331 ORTHO05D008043 9.1e-92 341.3 294 62.6
MELO3C008946.2 Cucumis melo HOM05D006331 ORTHO05D008043 1.2e-91 340.9 264 65.9
CsaV3_4G030790 Cucumis sativus L. HOM05D006331 ORTHO05D008043 1.2e-91 340.9 282 64.2
TWI75G0452 Tripterygium wilfordii HOM05D006331 ORTHO05D008043 1.6e-91 340.5 284 64.1
EL10Ac4g09668 Beta vulgaris HOM05D006331 ORTHO05D008043 2.7e-91 339.7 300 62.0
Carub.0006s0771 Capsella rubella HOM05D006331 ORTHO05D008043 3.5e-91 339.3 243 66.7
Sabra07G0082300 Salix brachista HOM05D006331 ORTHO05D008043 2.2e-90 336.7 252 65.9
Nitab4.5_0004338g0140 Nicotiana tabacum HOM05D006331 ORTHO05D008043 2.9e-90 336.3 269 66.9
AUR62006903 Chenopodium quinoa HOM05D006331 ORTHO05D008043 6.5e-90 335.1 288 63.9
Hund07213 Selenicereus undatus HOM05D006331 ORTHO05D008043 6.5e-90 335.1 281 64.8
Migut.L00582 Erythranthe guttata HOM05D006331 ORTHO05D008043 2.5e-89 333.2 270 63.0
FAN04G0432 Fragaria x ananassa HOM05D006331 ORTHO05D008043 2.5e-89 333.2 245 70.6
Migut.L00271 Erythranthe guttata HOM05D006331 ORTHO05D008043 4.2e-89 332.4 270 63.0
SalBow7G0499 Salvia bowleyana HOM05D006331 ORTHO05D008043 1.2e-88 330.9 291 59.1
Sed0028082 Sechium edule HOM05D006331 ORTHO05D008043 1.2e-88 330.9 261 66.7
DCAR_013180 Daucus carota HOM05D006331 ORTHO05D008043 1.6e-88 330.5 243 65.8
Sopen03g007600 Solanum pennellii HOM05D006331 ORTHO05D008043 1.6e-88 330.5 227 73.6
Cc07_g19500 Coffea canephora HOM05D006331 ORTHO05D008043 2.1e-88 330.1 275 64.7
Solyc03g043750.3 Solanum lycopersicum HOM05D006331 ORTHO05D008043 3.6e-88 329.3 227 73.6
VMungo0251G2607 Vigna mungo HOM05D006331 ORTHO05D008043 4.7e-88 328.9 273 65.9
Aa31LG3G17820 Aethionema arabicum HOM05D006331 ORTHO05D008043 8.0e-88 328.2 245 70.2
Lalb_Chr12g0202951 Lupinus albus HOM05D006331 ORTHO05D008043 1.0e-87 327.8 291 59.1
Nn5g28340 Nelumbo nucifera HOM05D006331 ORTHO05D008043 1.0e-87 327.8 281 60.1
Oeu050103.1 Olea europaea HOM05D006331 ORTHO05D008043 1.0e-87 327.8 335 55.2
PSO170G3731 Papaver somniferum HOM05D006331 ORTHO05D008043 1.0e-87 327.8 266 64.7
Nitab4.5_0002100g0110 Nicotiana tabacum HOM05D006331 ORTHO05D008043 2.3e-87 326.6 270 63.7
arahy.Tifrunner.gnm1.ann1.GTTL2Q Arachis hypogaea HOM05D006331 ORTHO05D008043 3.0e-87 326.2 285 61.4
PGSC0003DMG400016687 Solanum tuberosum HOM05D006331 ORTHO05D008043 4.0e-87 325.9 227 72.7
COL.COLO4_12111 Corchorus olitorius HOM05D006331 ORTHO05D008043 5.2e-87 325.5 218 73.4
PSO528G0231 Papaver somniferum HOM05D006331 ORTHO05D008043 5.2e-87 325.5 260 64.6
MSTRG.3598 Avicennia marina HOM05D006331 ORTHO05D008043 4.4e-86 322.4 291 59.5
Actinidia16518 Actinidia chinensis HOM05D006331 ORTHO05D008043 7.5e-86 321.6 247 66.4
CAN.G11.28 Capsicum annuum HOM05D006331 ORTHO05D008043 1.7e-85 320.5 269 62.8
BcaB08g37229 Brassica carinata HOM05D006331 ORTHO05D008043 2.8e-85 319.7 264 64.8
Oeu042319.1 Olea europaea HOM05D006331 ORTHO05D008043 3.7e-85 319.3 267 59.6
SGA_v2.0_scaffold143G35715 Striga asiatica HOM05D006331 ORTHO05D008043 3.7e-85 319.3 301 56.1
arahy.Tifrunner.gnm1.ann1.9C2QS4 Arachis hypogaea HOM05D006331 ORTHO05D008043 1.1e-84 317.8 292 58.9
Os06g0214900 Oryza sativa ssp. japonica HOM05D006331 ORTHO05D008043 1.1e-84 317.8 258 61.2
Atru.BG.96.p Acer truncatum HOM05D006331 ORTHO05D008043 2.0e-83 313.5 220 70.9
Haze_25343 Corylus avellana HOM05D006331 ORTHO05D008043 7.8e-83 311.6 213 71.8
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 5.0e-82 308.9 295 55.3
ATR0665G153 Amborella trichopoda HOM05D006331 ORTHO05D008043 1.1e-81 307.8 228 66.2
Rhsim02G0171900 Rhododendron simsii HOM05D006331 ORTHO05D008043 1.5e-81 307.4 224 68.3
ClCG04G001810 Citrullus lanatus HOM05D006331 ORTHO05D008043 6.1e-80 302.0 300 57.3
HPP92_013148 Vanilla planifolia HOM05D006331 ORTHO05D008043 2.2e-77 293.5 237 62.0
SMO172G0167 Selaginella moellendorffii HOM05D006331 ORTHO05D008043 1.2e-75 287.7 253 59.7
Ah.06g188590 Amaranthus hybridus HOM05D006331 ORTHO05D008043 7.8e-75 285.0 295 52.5
Mapoly0183s0011 Marchantia polymorpha HOM05D006331 ORTHO05D008043 1.7e-74 283.9 245 58.0
Pp3c24_18540 Physcomitrium patens HOM05D006331 ORTHO05D008043 4.6e-67 259.2 232 56.5
Atru.chr4.1109 Acer truncatum HOM05D006331 ORTHO05D008043 1.2e-64 251.1 174 72.4
Sc16g0009670 Simmondsia chinensis HOM05D006331 ORTHO05D008043 1.1e-63 248.1 174 68.4
Cpa.g.sc37.37 Carica papaya HOM05D006331 ORTHO05D008043 5.2e-63 245.7 171 69.0
Glyma.08G002967 Glycine max HOM05D006331 ORTHO05D008043 6.4e-61 238.8 154 74.7
Manes.10G075600 Manihot esculenta HOM05D006331 ORTHO05D008043 1.9e-57 227.3 283 48.4
AagrBONN_evm.TU.Sc2ySwM_228.1808 Anthoceros agrestis HOM05D006331 ORTHO05D008043 1.1e-55 221.5 252 48.4
MBI06_g01071_MAGBIO Magnolia biondii HOM05D006331 ORTHO05D008043 2.3e-55 220.3 257 48.2
SEGI_30894 Sequoiadendron giganteum HOM05D006331 ORTHO05D008043 9.6e-49 198.4 174 56.9
unitig_899.g14454 Utricularia gibba HOM05D006331 ORTHO05D008043 2.8e-48 196.8 261 45.6
MCO15G677 Micromonas commoda HOM05D006331 ORTHO05D008043 1.2e-43 181.4 223 44.8
PRCOL_00002259 Prasinoderma coloniale HOM05D006331 ORTHO05D008043 1.2e-43 181.4 221 46.6
Nn5g28377 Nelumbo nucifera HOM05D006331 ORTHO05D008043 6.0e-43 179.1 113 76.1
Cre16.g671000 Chlamydomonas reinhardtii HOM05D006331 ORTHO05D008043 4.3e-41 172.9 225 43.6
Lj4A830T32 Lonicera japonica HOM05D006331 ORTHO05D008043 3.5e-35 153.3 132 65.2
Hma1.2p1_2302F.1_g319320 Hydrangea macrophylla HOM05D006331 ORTHO05D008043 6.7e-34 149.1 104 71.2
Peaxi162Scf00699g00515 Petunia axillaris HOM05D006331 ORTHO05D008043 1.5e-30 137.9 187 43.9
Zm00001eb373110 Zea mays HOM05D006331 ORTHO05D008043 4.5e-30 136.3 105 62.9
Lj4C830T4 Lonicera japonica HOM05D006331 ORTHO05D008043 2.5e-25 120.6 70 77.1
DCAR_006357 Daucus carota HOM05D006331 ORTHO05D008043 3.5e-19 100.1 66 68.2
SalBow8G4137 Salvia bowleyana HOM05D006331 ORTHO05D008043 3.3e-17 93.6 64 68.8
CDE05G2036 Ceratophyllum demersum HOM05D000484 ORTHO05D000346 7.6e-14 82.4 67 62.7
ECA232G1816 Erigeron canadensis HOM05D001446 ORTHO05D001360 4.2e-12 76.6 57 70.2
Ciclev10014668m.g Citrus clementina HOM05D000873 ORTHO05D001654 8.8e-10 68.9 257 24.9
ECA236G1579 Erigeron canadensis HOM05D007528 ORTHO05D008503 2.5e-09 67.4 37 81.1
Lj1C735T10 Lonicera japonica HOM05D000873 ORTHO05D001654 1.1e-07 62.0 236 26.3
BcaC03g18520 Brassica carinata HOM05D000873 ORTHO05D001654 4.1e-07 60.1 203 25.6
A02p03820 Brassica napus HOM05D000873 ORTHO05D001654 4.1e-07 60.1 203 25.6
C02p08630 Brassica napus HOM05D000873 ORTHO05D001654 4.1e-07 60.1 203 25.6
BolC2t06779H Brassica oleracea HOM05D000873 ORTHO05D001654 4.1e-07 60.1 203 25.6
BraA02t05348Z Brassica rapa HOM05D000873 ORTHO05D001654 4.1e-07 60.1 203 25.6
Sopen10g004430 Solanum pennellii HOM05D000873 ORTHO05D001654 4.1e-07 60.1 201 23.4
Thhalv10001939m.g Eutrema salsugineum HOM05D000873 ORTHO05D001654 1.2e-06 58.5 198 25.8
Lj8A117G57 Lonicera japonica HOM05D000873 ORTHO05D001654 1.5e-06 58.2 207 27.1
Zm00001eb172970 Zea mays HOM05D000873 ORTHO05D001654 1.5e-06 58.2 215 25.6
Carub.0003s3537 Capsella rubella HOM05D000873 ORTHO05D001654 2.0e-06 57.8 203 25.6
HanXRQChr06g0171011 Helianthus annuus HOM05D000873 ORTHO05D001654 2.6e-06 57.4 208 25.0
Lsat_1_v5_gn_1_126860 Lactuca sativa HOM05D000873 ORTHO05D001654 2.6e-06 57.4 197 25.4
AT2G20800 Arabidopsis thaliana HOM05D000873 ORTHO05D001654 3.4e-06 57.0 206 26.2
ECA248G3315 Erigeron canadensis HOM05D000873 ORTHO05D001654 4.5e-06 56.6 199 24.6
Manes.13G151400 Manihot esculenta HOM05D000873 ORTHO05D001654 4.5e-06 56.6 257 24.9
Os05g0331200 Oryza sativa ssp. japonica HOM05D000873 ORTHO05D001654 4.5e-06 56.6 196 25.0
Peaxi162Scf00608g00210 Petunia axillaris HOM05D000873 ORTHO05D001654 4.5e-06 56.6 205 23.4
AL3G53910 Arabidopsis lyrata HOM05D000873 ORTHO05D001654 5.9e-06 56.2 206 25.7
arahy.Tifrunner.gnm1.ann1.NVI3D8 Arachis hypogaea HOM05D000873 ORTHO05D001654 5.9e-06 56.2 251 23.1


User provided reference genes

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